Wall clock time and date at job start Tue Mar 31 2020 17:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48506 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47389 * 299.99977 * 3 2 1 6 6 H 1.48504 * 109.47160 * 60.00111 * 3 2 1 7 7 C 1.38810 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00003 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99988 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51119 * 60.10185 * 11 10 9 13 13 C 1.53708 * 109.48917 * 180.36506 * 11 10 9 14 14 N 1.47146 * 108.16578 * 172.40151 * 13 11 10 15 15 C 1.34776 * 120.98699 * 129.43343 * 14 13 11 16 16 O 1.21630 * 119.99687 * 2.99609 * 15 14 13 17 17 C 1.47167 * 120.00273 * 182.99941 * 15 14 13 18 18 C 1.35758 * 125.13029 * 172.88568 * 17 15 14 19 19 C 1.46416 * 106.13941 * 179.97438 * 18 17 15 20 20 N 1.32941 * 133.88464 * 179.97438 * 19 18 17 21 21 C 1.31439 * 121.38225 * 179.97438 * 20 19 18 22 22 C 1.38862 * 121.18464 * 0.02562 * 21 20 19 23 23 C 1.38214 * 119.71238 * 359.97438 * 22 21 20 24 24 C 1.39302 * 118.33021 * 0.25506 * 23 22 21 25 25 O 1.34586 * 133.42033 * 180.40334 * 24 23 22 26 26 C 1.47153 * 118.03643 * 309.15752 * 14 13 11 27 27 C 1.53297 * 108.38527 * 50.78334 * 26 14 13 28 28 O 1.42962 * 109.22283 * 307.70502 * 27 26 14 29 29 H 0.97001 * 119.99802 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99556 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47014 * 60.00257 * 10 9 7 32 32 H 1.09002 * 109.47472 * 300.00178 * 10 9 7 33 33 H 1.09001 * 109.83669 * 52.71515 * 13 11 10 34 34 H 1.09007 * 109.74333 * 292.02638 * 13 11 10 35 35 H 1.07999 * 126.92557 * 359.97438 * 18 17 15 36 36 H 1.08002 * 119.41006 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.14645 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.83718 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.68775 * 170.50932 * 26 14 13 40 40 H 1.09005 * 109.68193 * 291.02864 * 26 14 13 41 41 H 1.08999 * 109.50963 * 67.62559 * 27 26 14 42 42 H 1.09000 * 109.51554 * 187.77717 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4375 -4.7638 -0.8893 13 6 1.8317 -6.1511 0.0104 14 7 0.8598 -7.2402 0.1957 15 6 0.8482 -8.3074 -0.6273 16 8 1.6835 -8.4069 -1.5058 17 6 -0.1752 -9.3522 -0.4632 18 6 -0.3698 -10.3950 -1.3104 19 6 -1.4817 -11.1688 -0.7547 20 7 -2.1142 -12.2752 -1.1329 21 6 -3.1084 -12.7697 -0.4294 22 6 -3.5385 -12.1544 0.7388 23 6 -2.9141 -11.0013 1.1756 24 6 -1.8656 -10.4886 0.4152 25 8 -1.0598 -9.4194 0.5525 26 6 -0.0953 -7.1327 1.3100 27 6 -0.7661 -5.7560 1.2408 28 8 0.2416 -4.7445 1.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6845 -3.7146 0.8905 32 1 2.6846 -3.7146 -0.8894 33 1 2.5509 -6.1575 0.8295 34 1 2.3533 -6.2819 -0.9378 35 1 0.1839 -10.6103 -2.2123 36 1 -3.6001 -13.6703 -0.7665 37 1 -4.3568 -12.5755 1.3040 38 1 -3.2340 -10.5076 2.0813 39 1 -0.8505 -7.9138 1.2230 40 1 0.4330 -7.2369 2.2578 41 1 -1.3989 -5.7036 0.3549 42 1 -1.3735 -5.6017 2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724815894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:37 Heat of formation + Delta-G solvation = -21.281509 kcal Electronic energy + Delta-G solvation = -27639.090031 eV Core-core repulsion = 23586.336418 eV Total energy + Delta-G solvation = -4052.753613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.95528 -41.49531 -39.98237 -39.58544 -36.73627 -35.94761 -34.34695 -33.96715 -32.69765 -32.07210 -31.18207 -29.45277 -27.73724 -25.83207 -24.89695 -24.60065 -23.90532 -22.86580 -22.28124 -21.24313 -19.60084 -19.20893 -18.76618 -17.90212 -17.85666 -17.43747 -17.35304 -16.84470 -16.59680 -16.49735 -16.11104 -15.82088 -15.40973 -15.07502 -14.83166 -14.71538 -14.53902 -14.40950 -14.34698 -14.09762 -13.95316 -13.63880 -13.33393 -12.88453 -12.81024 -12.64463 -12.30401 -12.03339 -11.96117 -11.83873 -11.70419 -11.44015 -11.22325 -10.97051 -10.54177 -10.20723 -9.97651 -9.68948 -9.00533 -7.93940 -5.23324 -0.74213 0.04203 0.56217 0.97686 1.48134 1.49570 1.53970 1.59864 1.76721 2.56448 2.65379 2.67974 2.71881 3.26615 3.33747 3.40270 3.49219 3.67339 3.79760 3.87745 3.90516 3.99055 4.04881 4.12771 4.23120 4.33670 4.41477 4.42998 4.48991 4.58053 4.67455 4.73640 4.83981 4.91401 4.93214 5.01933 5.07291 5.12381 5.25064 5.49503 5.68503 5.93683 6.17444 6.27744 6.57581 6.76861 7.33924 8.07907 8.32270 9.30062 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.002249 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.255487 B =12448.694574 C =12980.572787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.160 3.840 11 C 0.085 3.915 12 H 0.051 0.949 13 C 0.095 3.905 14 N -0.599 5.599 15 C 0.599 3.401 16 O -0.541 6.541 17 C -0.016 4.016 18 C -0.104 4.104 19 C 0.033 3.967 20 N -0.475 5.475 21 C 0.100 3.900 22 C -0.122 4.122 23 C -0.061 4.061 24 C -0.005 4.005 25 O -0.168 6.168 26 C 0.062 3.938 27 C 0.043 3.957 28 O -0.383 6.383 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.200 0.800 37 H 0.198 0.802 38 H 0.179 0.821 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.790 -29.351 5.266 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.026 3.974 12 H 0.069 0.931 13 C -0.027 4.027 14 N -0.331 5.331 15 C 0.387 3.613 16 O -0.421 6.421 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.095 4.095 20 N -0.186 5.186 21 C -0.066 4.066 22 C -0.141 4.141 23 C -0.088 4.088 24 C -0.054 4.054 25 O -0.070 6.070 26 C -0.059 4.059 27 C -0.034 4.034 28 O -0.302 6.302 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.195 0.805 36 H 0.217 0.783 37 H 0.215 0.785 38 H 0.197 0.803 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.816 -29.321 4.394 30.661 hybrid contribution -0.185 1.327 0.183 1.352 sum -8.001 -27.993 4.577 29.472 Atomic orbital electron populations 1.69847 1.06723 1.25975 1.59541 1.25625 0.96459 1.01275 1.03716 0.85019 0.78262 0.79517 0.76614 1.18846 1.22050 1.22023 1.19710 0.91636 0.85160 1.41096 0.90252 1.42412 1.05736 1.00844 1.89349 1.20785 0.92966 0.83728 0.99224 1.22605 0.92423 0.94074 0.88281 0.93084 1.22394 0.91112 0.84004 1.05225 1.48129 1.35126 1.19685 1.30138 1.16926 0.82523 0.80392 0.81444 1.90874 1.38717 1.77528 1.34946 1.21644 0.95001 0.99206 0.90894 1.22663 0.96627 0.92368 1.00890 1.20662 0.98530 0.95323 0.94964 1.67045 1.08512 1.09786 1.33211 1.23628 0.91331 1.00052 0.91568 1.22663 1.00658 0.93743 0.97028 1.21104 0.91225 0.96201 1.00235 1.21246 0.96427 0.89065 0.98703 1.84121 1.39123 1.40926 1.42799 1.23217 0.93348 0.99785 0.89507 1.23174 0.90145 0.86128 1.03986 1.88120 1.47063 1.52589 1.42437 0.94039 0.79297 0.94836 0.93539 0.88325 0.87832 0.80502 0.78312 0.78475 0.80315 0.85223 0.88264 0.93240 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -39.04 5.49 -343.46 -1.89 -40.93 16 10 C 0.16 6.50 5.96 86.38 0.51 7.01 16 11 C 0.09 2.88 2.88 30.83 0.09 2.97 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C 0.10 2.62 5.94 86.49 0.51 3.14 16 14 N -0.60 -15.24 3.01 -820.72 -2.47 -17.72 16 15 C 0.60 16.39 7.69 86.59 0.67 17.06 16 16 O -0.54 -17.77 16.32 -4.13 -0.07 -17.83 16 17 C -0.02 -0.39 6.82 24.04 0.16 -0.22 16 18 C -0.10 -2.43 10.82 23.83 0.26 -2.18 16 19 C 0.03 0.72 7.52 41.70 0.31 1.04 16 20 N -0.48 -9.36 10.41 -185.14 -1.93 -11.29 16 21 C 0.10 1.03 11.17 84.90 0.95 1.97 16 22 C -0.12 -0.67 10.09 22.41 0.23 -0.44 16 23 C -0.06 -0.58 10.19 22.52 0.23 -0.35 16 24 C 0.00 -0.09 7.42 23.12 0.17 0.08 16 25 O -0.17 -3.30 6.95 -10.81 -0.08 -3.37 16 26 C 0.06 1.26 6.47 86.35 0.56 1.82 16 27 C 0.04 1.04 6.99 72.08 0.50 1.54 16 28 O -0.38 -13.19 10.13 -148.98 -1.51 -14.70 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.38 21.35 7.54 -92.71 -0.70 20.65 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.92 7.10 -2.38 -0.02 2.90 16 35 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.20 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.20 -0.70 8.06 -2.91 -0.02 -0.72 16 38 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.13 2.28 3.89 -52.08 -0.20 2.08 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -78.69 355.59 1.01 -77.68 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.18 Total: 23.58 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.46 Total: 16.18 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -6.01 Total: -130.42 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.65 Total: -35.91 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.69 1.01 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724815894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.395 kcal (2) G-P(sol) polarization free energy of solvation -78.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds