Wall clock time and date at job start Tue Mar 31 2020 16:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.53237 * 2 1 4 4 C 1.38238 * 119.99798 * 271.10127 * 3 2 1 5 5 C 1.38239 * 119.99470 * 179.74500 * 4 3 2 6 6 C 1.38237 * 119.99874 * 0.55598 * 5 4 3 7 7 C 1.38235 * 120.00336 * 359.69731 * 6 5 4 8 8 C 1.38235 * 119.99634 * 91.38037 * 3 2 1 9 9 N 1.47309 * 110.60000 * 122.83033 * 2 1 3 10 10 C 1.34532 * 106.61997 * 118.68012 * 9 2 1 11 11 O 1.21538 * 123.77224 * 179.97438 * 10 9 2 12 12 N 1.33792 * 112.45401 * 0.02562 * 10 9 2 13 13 C 1.46504 * 124.17256 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47412 * 90.02452 * 13 12 10 15 15 O 1.21280 * 119.99901 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00338 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00288 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47115 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 C 1.34761 * 111.64795 * 0.22543 * 12 10 9 27 27 O 1.21238 * 127.16000 * 179.73782 * 26 12 10 28 28 H 1.08995 * 109.47123 * 297.87010 * 1 2 3 29 29 H 1.09002 * 109.47349 * 57.87158 * 1 2 3 30 30 H 1.09004 * 109.46713 * 177.86872 * 1 2 3 31 31 H 1.07997 * 120.00091 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99824 * 180.27701 * 5 4 3 33 33 H 1.08003 * 119.99928 * 179.72637 * 6 5 4 34 34 H 1.07995 * 120.00140 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.00320 * 359.97438 * 8 3 2 36 36 H 0.96999 * 126.69144 * 298.72205 * 9 2 1 37 37 H 1.09000 * 109.46981 * 330.02030 * 13 12 10 38 38 H 1.09002 * 109.46732 * 210.02089 * 13 12 10 39 39 H 0.97001 * 119.99493 * 0.02562 * 16 14 13 40 40 H 1.08998 * 109.46734 * 60.00204 * 17 16 14 41 41 H 1.09002 * 109.47081 * 299.99975 * 17 16 14 42 42 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4113 0.0000 4 6 2.2794 2.0666 -1.1970 5 6 2.7593 3.3630 -1.1968 6 6 3.0291 4.0000 0.0000 7 6 2.8132 3.3428 1.1969 8 6 2.3280 2.0484 1.1968 9 7 2.0483 -0.7476 1.1587 10 6 2.7628 -1.7752 0.6653 11 8 3.3328 -2.5957 1.3574 12 7 2.7766 -1.7922 -0.6725 13 6 3.4770 -2.7978 -1.4754 14 6 2.5504 -3.9534 -1.7530 15 8 1.4168 -3.9387 -1.3221 16 7 2.9814 -5.0032 -2.4800 17 6 2.0809 -6.1268 -2.7494 18 6 2.8012 -7.1611 -3.5754 19 1 3.8274 -6.9980 -3.8699 20 6 2.1505 -8.3162 -3.9543 21 7 0.9011 -8.5150 -3.5953 22 14 3.0411 -9.5947 -4.9847 23 1 4.4256 -9.1327 -5.2588 24 1 3.0865 -10.8819 -4.2456 25 1 2.3193 -9.7861 -6.2683 26 6 2.0714 -0.7671 -1.1901 27 8 1.9032 -0.5125 -2.3634 28 1 -0.3633 0.4804 0.9084 29 1 -0.3634 0.5465 -0.8703 30 1 -0.3633 -1.0270 -0.0382 31 1 2.0728 1.5674 -2.1321 32 1 2.9276 3.8766 -2.1318 33 1 3.4082 5.0113 0.0001 34 1 3.0236 3.8406 2.1319 35 1 2.1593 1.5349 2.1318 36 1 1.9023 -0.5398 2.0948 37 1 4.3500 -3.1551 -0.9293 38 1 3.7951 -2.3527 -2.4182 39 1 3.8882 -5.0150 -2.8243 40 1 1.2074 -5.7696 -3.2949 41 1 1.7634 -6.5721 -1.8065 42 1 0.4435 -9.3278 -3.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031631906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:32 Heat of formation + Delta-G solvation = -45.898525 kcal Electronic energy + Delta-G solvation = -28082.532080 eV Core-core repulsion = 24028.710994 eV Total energy + Delta-G solvation = -4053.821086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.80328 -39.64542 -38.77756 -38.55945 -36.47894 -35.18804 -34.20217 -32.40085 -31.99636 -31.25909 -29.68933 -29.18465 -26.85954 -25.04727 -23.35152 -23.19224 -22.71470 -21.48939 -20.61343 -19.74556 -18.36614 -17.73911 -17.32198 -16.74283 -16.34597 -15.90027 -15.79697 -15.56596 -15.29175 -14.87205 -14.79958 -14.65442 -14.34269 -14.26281 -13.99686 -13.76034 -13.44831 -12.91070 -12.81491 -12.77507 -12.53873 -12.50387 -12.00230 -11.72592 -11.56360 -11.49699 -10.99192 -10.91170 -10.87024 -10.38331 -10.30548 -10.19228 -9.75197 -9.40124 -9.29261 -9.18426 -9.03520 -8.76572 -7.95998 -6.17547 -4.24596 0.85706 1.02741 1.52940 2.00861 2.86252 2.95965 3.19323 3.23886 3.30802 3.33974 3.40917 3.67601 3.99515 4.02737 4.35686 4.49886 4.56167 4.66738 4.78987 4.87069 5.10031 5.16839 5.18041 5.18895 5.23858 5.28471 5.31410 5.49673 5.52472 5.55820 5.70116 5.78394 6.06165 6.11879 6.15570 6.56749 6.60995 6.93370 7.22503 7.27237 7.34305 7.48972 7.62896 7.94366 8.02822 8.52386 8.72735 8.98422 9.41630 10.92728 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.002487 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.565718 B =11256.127515 C =11509.854079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.168 3.832 3 C -0.093 4.093 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.097 4.097 9 N -0.719 5.719 10 C 0.712 3.288 11 O -0.535 6.535 12 N -0.555 5.555 13 C 0.096 3.904 14 C 0.487 3.513 15 O -0.546 6.546 16 N -0.705 5.705 17 C 0.250 3.750 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.542 3.458 27 O -0.458 6.458 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.438 0.562 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.393 0.607 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 26.274 8.758 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.077 3.923 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.116 4.116 9 N -0.384 5.384 10 C 0.413 3.587 11 O -0.407 6.407 12 N -0.299 5.299 13 C -0.029 4.029 14 C 0.269 3.731 15 O -0.425 6.425 16 N -0.353 5.353 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.328 3.672 27 O -0.327 6.327 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.283 0.717 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.226 0.774 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.473 25.713 8.691 27.363 hybrid contribution 0.727 -0.766 -0.279 1.092 sum 4.199 24.947 8.412 26.660 Atomic orbital electron populations 1.22012 0.89000 1.04729 1.04395 1.20114 0.97326 0.89919 0.84893 1.19442 1.02023 0.93310 0.94631 1.21437 0.97597 0.95156 0.98369 1.21184 0.99079 0.94666 0.98405 1.21264 0.99271 1.00021 0.92599 1.21122 0.99691 0.94639 0.98362 1.20833 0.98805 0.94952 0.96978 1.45549 1.55106 1.29045 1.08669 1.15715 0.79541 0.81873 0.81565 1.91024 1.48244 1.40838 1.60611 1.45752 1.49272 1.27157 1.07754 1.21615 0.95600 0.88334 0.97398 1.20485 0.88484 0.84120 0.79962 1.90675 1.19738 1.79982 1.52082 1.46379 1.17269 1.19936 1.51757 1.19153 0.89239 0.81902 0.96707 1.21248 0.99174 1.03314 1.34395 0.91710 1.24965 0.94909 0.98152 0.96041 1.69988 1.10393 1.26839 1.45030 0.86337 0.79627 0.81018 0.79791 1.19586 1.20792 1.20786 1.20491 0.76865 0.80166 0.89649 1.90753 1.56336 1.69209 1.16384 0.90141 0.89633 0.90178 0.84041 0.85529 0.85834 0.85671 0.85979 0.71728 0.85830 0.86051 0.77432 0.95392 0.95384 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.98 37.16 0.33 -1.02 16 2 C 0.17 1.81 1.17 -133.24 -0.16 1.66 16 3 C -0.09 -0.87 4.87 -104.62 -0.51 -1.38 16 4 C -0.11 -1.03 9.17 -39.58 -0.36 -1.39 16 5 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 6 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 7 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 8 C -0.10 -0.74 9.35 -39.58 -0.37 -1.11 16 9 N -0.72 -7.74 5.29 -54.02 -0.29 -8.03 16 10 C 0.71 10.77 8.62 -88.02 -0.76 10.01 16 11 O -0.53 -9.75 17.48 5.33 0.09 -9.65 16 12 N -0.55 -8.43 2.09 -122.02 -0.26 -8.69 16 13 C 0.10 1.43 6.18 -5.19 -0.03 1.40 16 14 C 0.49 9.95 7.90 -10.99 -0.09 9.86 16 15 O -0.55 -13.43 16.43 5.56 0.09 -13.33 16 16 N -0.70 -14.89 5.55 -61.48 -0.34 -15.23 16 17 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 18 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 19 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 22 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.54 7.70 6.53 -10.56 -0.07 7.63 16 27 O -0.46 -7.18 15.64 5.59 0.09 -7.09 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.14 1.51 5.76 -52.49 -0.30 1.21 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.69 6.95 -52.49 -0.36 0.32 16 36 H 0.44 3.38 8.10 -40.82 -0.33 3.05 16 37 H 0.12 1.60 7.86 -51.93 -0.41 1.19 16 38 H 0.12 1.48 8.00 -51.93 -0.42 1.07 16 39 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -36.53 365.48 -8.11 -44.64 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.08 Total: 6.23 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -3.65 Total: 15.24 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.15 Total: -57.45 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: 0.27 Total: -30.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.53 -8.11 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031631906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.258 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds