Wall clock time and date at job start Tue Mar 31 2020 16:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.53237 * 2 1 4 4 C 1.38238 * 119.99798 * 271.10127 * 3 2 1 5 5 C 1.38239 * 119.99470 * 179.74500 * 4 3 2 6 6 C 1.38237 * 119.99874 * 0.55598 * 5 4 3 7 7 C 1.38235 * 120.00336 * 359.69731 * 6 5 4 8 8 C 1.38235 * 119.99634 * 91.38037 * 3 2 1 9 9 N 1.47309 * 110.60000 * 122.83033 * 2 1 3 10 10 C 1.34532 * 106.61997 * 118.68012 * 9 2 1 11 11 O 1.21538 * 123.77224 * 179.97438 * 10 9 2 12 12 N 1.33792 * 112.45401 * 0.02562 * 10 9 2 13 13 C 1.46504 * 124.17256 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47412 * 90.02452 * 13 12 10 15 15 O 1.21280 * 119.99901 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00338 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00288 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47115 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 C 1.34761 * 111.64795 * 0.22543 * 12 10 9 27 27 O 1.21238 * 127.16000 * 179.73782 * 26 12 10 28 28 H 1.08995 * 109.47123 * 297.87010 * 1 2 3 29 29 H 1.09002 * 109.47349 * 57.87158 * 1 2 3 30 30 H 1.09004 * 109.46713 * 177.86872 * 1 2 3 31 31 H 1.07997 * 120.00091 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99824 * 180.27701 * 5 4 3 33 33 H 1.08003 * 119.99928 * 179.72637 * 6 5 4 34 34 H 1.07995 * 120.00140 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.00320 * 359.97438 * 8 3 2 36 36 H 0.96999 * 126.69144 * 298.72205 * 9 2 1 37 37 H 1.09000 * 109.46981 * 330.02030 * 13 12 10 38 38 H 1.09002 * 109.46732 * 210.02089 * 13 12 10 39 39 H 0.97001 * 119.99493 * 0.02562 * 16 14 13 40 40 H 1.08998 * 109.46734 * 60.00204 * 17 16 14 41 41 H 1.09002 * 109.47081 * 299.99975 * 17 16 14 42 42 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4113 0.0000 4 6 2.2794 2.0666 -1.1970 5 6 2.7593 3.3630 -1.1968 6 6 3.0291 4.0000 0.0000 7 6 2.8132 3.3428 1.1969 8 6 2.3280 2.0484 1.1968 9 7 2.0483 -0.7476 1.1587 10 6 2.7628 -1.7752 0.6653 11 8 3.3328 -2.5957 1.3574 12 7 2.7766 -1.7922 -0.6725 13 6 3.4770 -2.7978 -1.4754 14 6 2.5504 -3.9534 -1.7530 15 8 1.4168 -3.9387 -1.3221 16 7 2.9814 -5.0032 -2.4800 17 6 2.0809 -6.1268 -2.7494 18 6 2.8012 -7.1611 -3.5754 19 1 3.8274 -6.9980 -3.8699 20 6 2.1505 -8.3162 -3.9543 21 7 0.9011 -8.5150 -3.5953 22 14 3.0411 -9.5947 -4.9847 23 1 4.4256 -9.1327 -5.2588 24 1 3.0865 -10.8819 -4.2456 25 1 2.3193 -9.7861 -6.2683 26 6 2.0714 -0.7671 -1.1901 27 8 1.9032 -0.5125 -2.3634 28 1 -0.3633 0.4804 0.9084 29 1 -0.3634 0.5465 -0.8703 30 1 -0.3633 -1.0270 -0.0382 31 1 2.0728 1.5674 -2.1321 32 1 2.9276 3.8766 -2.1318 33 1 3.4082 5.0113 0.0001 34 1 3.0236 3.8406 2.1319 35 1 2.1593 1.5349 2.1318 36 1 1.9023 -0.5398 2.0948 37 1 4.3500 -3.1551 -0.9293 38 1 3.7951 -2.3527 -2.4182 39 1 3.8882 -5.0150 -2.8243 40 1 1.2074 -5.7696 -3.2949 41 1 1.7634 -6.5721 -1.8065 42 1 0.4435 -9.3278 -3.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031631906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:31 Heat of formation + Delta-G solvation = -72.914048 kcal Electronic energy + Delta-G solvation = -28083.703561 eV Core-core repulsion = 24028.710994 eV Total energy + Delta-G solvation = -4054.992567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.88322 -40.70595 -40.18566 -39.64797 -37.56790 -36.48151 -36.04488 -34.43353 -32.84763 -31.84874 -30.70432 -30.40051 -28.69703 -26.04510 -24.86726 -24.19768 -23.73221 -22.57036 -21.75432 -21.23113 -19.52064 -19.13482 -18.44104 -18.02881 -17.61602 -17.20875 -17.02370 -16.74562 -16.60753 -16.40939 -16.19130 -15.64980 -15.58471 -15.28086 -15.10858 -14.76738 -14.38364 -14.32335 -14.15944 -14.04015 -13.60404 -13.54319 -13.26062 -13.22247 -12.93820 -12.76140 -12.39583 -12.24621 -12.18283 -11.96375 -11.71846 -11.49027 -11.27550 -10.84796 -10.79816 -10.59242 -9.95040 -9.86174 -9.79791 -8.31411 -6.48205 0.22743 0.42629 0.47610 0.89807 1.42664 1.43887 1.53670 1.57536 1.73722 1.96596 2.30437 2.50926 2.67530 2.83931 3.03787 3.22063 3.64839 3.72319 3.79075 4.02524 4.07449 4.13063 4.21943 4.29296 4.38121 4.51516 4.56240 4.59486 4.70397 4.94581 5.01611 5.04962 5.13212 5.18374 5.40764 5.48941 5.52382 5.60210 5.60936 5.66758 5.80134 5.83340 6.03558 6.15906 6.61207 6.72978 6.94546 7.18521 7.33870 8.81168 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.002487 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.565718 B =11256.127515 C =11509.854079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.178 3.822 3 C -0.104 4.104 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.119 4.119 8 C -0.099 4.099 9 N -0.696 5.696 10 C 0.706 3.294 11 O -0.571 6.571 12 N -0.564 5.564 13 C 0.104 3.896 14 C 0.482 3.518 15 O -0.593 6.593 16 N -0.698 5.698 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.087 0.913 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.987 3.013 23 H -0.251 1.251 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.532 3.468 27 O -0.478 6.478 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.453 0.547 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.413 0.587 40 H -0.012 1.012 41 H -0.013 1.013 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 28.281 9.175 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.087 3.913 3 C -0.105 4.105 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.117 4.117 9 N -0.361 5.361 10 C 0.407 3.593 11 O -0.447 6.447 12 N -0.309 5.309 13 C -0.021 4.021 14 C 0.267 3.733 15 O -0.475 6.475 16 N -0.348 5.348 17 C 0.145 3.855 18 C -0.593 4.593 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.175 1.175 24 H -0.205 1.205 25 H -0.204 1.204 26 C 0.320 3.680 27 O -0.349 6.349 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.301 0.699 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.249 0.751 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.528 27.791 9.123 29.768 hybrid contribution 0.042 -1.270 -0.382 1.327 sum 5.569 26.521 8.741 28.474 Atomic orbital electron populations 1.22048 0.88022 1.03597 1.06272 1.20125 0.97840 0.90390 0.82910 1.19310 1.03537 0.92179 0.95472 1.21388 0.99074 0.96184 0.97800 1.21393 0.98809 0.94059 0.99759 1.21616 0.98177 1.01059 0.92114 1.21489 0.98489 0.94224 0.99513 1.21083 0.98275 0.95505 0.96886 1.45452 1.53476 1.27604 1.09591 1.15909 0.79699 0.82280 0.81397 1.90994 1.50058 1.42406 1.61247 1.45927 1.49600 1.27254 1.08071 1.21655 0.94453 0.86434 0.99521 1.21480 0.88628 0.84844 0.78311 1.90647 1.22219 1.81025 1.53598 1.46077 1.17507 1.18993 1.52260 1.18574 0.89251 0.83493 0.94174 1.21644 1.00131 1.03362 1.34125 0.89465 1.26105 0.95631 1.00761 0.97254 1.70151 1.12500 1.27817 1.46562 0.85075 0.78986 0.77451 0.77483 1.17456 1.20496 1.20441 1.21149 0.76361 0.80114 0.90409 1.90734 1.56898 1.69721 1.17501 0.86871 0.89339 0.92588 0.85927 0.84241 0.83342 0.83025 0.84041 0.69869 0.83234 0.82859 0.75052 0.99357 0.99536 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.98 71.98 0.65 -1.96 16 2 C 0.18 3.71 1.17 2.24 0.00 3.71 16 3 C -0.10 -1.79 4.87 -19.86 -0.10 -1.88 16 4 C -0.13 -2.32 9.17 22.27 0.20 -2.12 16 5 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 6 C -0.11 -1.17 10.05 22.27 0.22 -0.94 16 7 C -0.12 -1.18 10.05 22.27 0.22 -0.96 16 8 C -0.10 -1.22 9.35 22.27 0.21 -1.01 16 9 N -0.70 -14.30 5.29 -443.24 -2.34 -16.64 16 10 C 0.71 21.21 8.62 179.44 1.55 22.76 16 11 O -0.57 -20.87 17.48 -3.83 -0.07 -20.94 16 12 N -0.56 -17.14 2.09 -777.20 -1.63 -18.76 16 13 C 0.10 3.07 6.18 85.63 0.53 3.59 16 14 C 0.48 20.22 7.90 87.66 0.69 20.91 16 15 O -0.59 -30.66 16.43 -3.03 -0.05 -30.71 16 16 N -0.70 -30.12 5.55 -466.81 -2.59 -32.71 16 17 C 0.27 15.01 5.43 85.63 0.46 15.48 16 18 C -0.55 -30.47 9.28 25.60 0.24 -30.24 16 19 H 0.09 4.29 7.60 -2.91 -0.02 4.27 16 20 C 0.00 0.11 5.46 84.66 0.46 0.57 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 22 Si 0.99 42.75 29.54 68.60 2.03 44.77 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 C 0.53 15.24 6.53 87.94 0.57 15.81 16 27 O -0.48 -15.37 15.64 -2.90 -0.05 -15.41 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 2.69 5.76 -2.91 -0.02 2.67 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 35 H 0.14 1.10 6.95 -2.91 -0.02 1.08 16 36 H 0.45 6.18 8.10 -92.71 -0.75 5.42 16 37 H 0.15 3.65 7.86 -2.39 -0.02 3.63 16 38 H 0.15 3.52 8.00 -2.39 -0.02 3.50 16 39 H 0.41 14.25 8.32 -92.71 -0.77 13.48 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -83.77 365.48 1.30 -82.48 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.44 Total: 22.34 kcal Atomic # 6 Polarization: 36.12 SS G_CDS: 6.14 Total: 42.26 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.28 Total: -124.80 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -0.16 Total: -67.06 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -83.77 1.30 -82.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031631906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.563 kcal (2) G-P(sol) polarization free energy of solvation -83.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds