Wall clock time and date at job start Tue Mar 31 2020 16:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35452 * 126.77800 * 2 1 4 4 C 1.41378 * 103.98317 * 180.09298 * 3 2 1 5 5 C 1.50704 * 126.79734 * 179.88520 * 4 3 2 6 6 N 1.46500 * 109.47086 * 94.71331 * 5 4 3 7 7 C 1.46502 * 119.99903 * 269.99926 * 6 5 4 8 8 C 1.34775 * 120.00235 * 89.99546 * 6 5 4 9 9 O 1.21593 * 119.99558 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00133 * 179.97438 * 8 6 5 11 11 C 1.40022 * 119.99972 * 175.43193 * 10 8 6 12 12 C 1.38916 * 120.00202 * 215.14231 * 11 10 8 13 13 C 1.38009 * 119.99844 * 180.02562 * 12 11 10 14 14 C 1.38902 * 120.00511 * 0.02562 * 13 12 11 15 15 O 1.35784 * 120.00081 * 179.97438 * 14 13 12 16 16 C 1.34811 * 116.99947 * 5.37934 * 15 14 13 17 17 H 1.07998 * 120.00136 * 354.96051 * 16 15 14 18 18 C 1.38626 * 119.99913 * 174.95539 * 16 15 14 19 19 N 1.31581 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46995 * 90.00441 * 20 18 16 22 22 H 1.48502 * 109.47415 * 210.00262 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00565 * 20 18 16 24 24 C 1.38903 * 119.99865 * 0.23952 * 14 13 12 25 25 C 1.38008 * 120.00313 * 359.48730 * 24 14 13 26 26 N 1.30171 * 106.39735 * 359.62637 * 4 3 2 27 27 O 1.20920 * 111.60794 * 0.23674 * 26 4 3 28 28 H 1.09000 * 109.47463 * 180.30802 * 1 2 3 29 29 H 1.09000 * 109.47408 * 300.30682 * 1 2 3 30 30 H 1.09004 * 109.47092 * 60.30261 * 1 2 3 31 31 H 1.07999 * 128.00611 * 359.95737 * 3 2 1 32 32 H 1.08997 * 109.47100 * 334.71062 * 5 4 3 33 33 H 1.08997 * 109.46810 * 214.71024 * 5 4 3 34 34 H 1.08997 * 109.46766 * 269.99930 * 7 6 5 35 35 H 1.08996 * 109.46879 * 29.99775 * 7 6 5 36 36 H 1.09003 * 109.47153 * 149.99792 * 7 6 5 37 37 H 0.96994 * 120.00055 * 355.43674 * 10 8 6 38 38 H 1.07994 * 120.00027 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.99776 * 179.97438 * 13 12 11 40 40 H 0.96994 * 119.99886 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00025 * 179.71871 * 24 14 13 42 42 H 1.07998 * 120.00390 * 180.23688 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9210 1.3000 -0.0056 6 7 5.4025 1.4505 1.3698 7 6 5.0034 2.6163 2.1622 8 6 6.2125 0.5164 1.9063 9 8 6.5439 -0.4511 1.2485 10 7 6.6558 0.6551 3.1715 11 6 7.4182 -0.3604 3.7615 12 6 7.2818 -0.6332 5.1167 13 6 8.0337 -1.6338 5.6983 14 6 8.9272 -2.3677 4.9287 15 8 9.6673 -3.3518 5.5010 16 6 9.4078 -3.6406 6.7920 17 1 8.6981 -3.0446 7.3466 18 6 10.0517 -4.7027 7.4076 19 7 10.9166 -5.4287 6.7321 20 14 9.6926 -5.1026 9.1966 21 1 8.5648 -6.0659 9.2718 22 1 10.8986 -5.7027 9.8215 23 1 9.3286 -3.8571 9.9188 24 6 9.0677 -2.0913 3.5747 25 6 8.3118 -1.0945 2.9918 26 7 3.4763 -0.7564 0.0048 27 8 2.3094 -1.0737 0.0063 28 1 -0.3634 -1.0276 0.0055 29 1 -0.3634 0.5186 0.8872 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1270 -0.0006 32 1 4.7632 2.2848 -0.4451 33 1 5.6607 0.7548 -0.5918 34 1 5.7251 3.4198 2.0151 35 1 4.0165 2.9516 1.8434 36 1 4.9718 2.3449 3.2174 37 1 6.4466 1.4583 3.6733 38 1 6.5880 -0.0618 5.7154 39 1 7.9279 -1.8456 6.7520 40 1 11.3674 -6.1716 7.1630 41 1 9.7658 -2.6589 2.9772 42 1 8.4182 -0.8822 1.9383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043558084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:35 Heat of formation + Delta-G solvation = 53.386851 kcal Electronic energy + Delta-G solvation = -27155.543426 eV Core-core repulsion = 23106.027676 eV Total energy + Delta-G solvation = -4049.515749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.10048 -40.47258 -38.79552 -36.94142 -35.78086 -34.44958 -33.86751 -33.23959 -32.10509 -30.14664 -28.76541 -28.08755 -27.73679 -26.09948 -25.16956 -23.33897 -22.21026 -21.67148 -20.51382 -19.65348 -18.43985 -17.89553 -17.75435 -17.33024 -17.18962 -16.45736 -15.96121 -15.34467 -14.75897 -14.51240 -14.47219 -14.17955 -13.89786 -13.73317 -13.65061 -13.49603 -13.30496 -13.15228 -12.94617 -12.76093 -12.69844 -12.45786 -12.25393 -11.76364 -11.49106 -11.45916 -11.18303 -10.98532 -10.70168 -10.50777 -10.41556 -9.84654 -9.58284 -9.52913 -9.18571 -8.99156 -8.64211 -8.13165 -6.85357 -6.39085 -3.97175 1.27949 1.83929 2.22474 2.31231 2.77608 2.91579 3.15091 3.16596 3.21359 3.31843 3.91022 4.00019 4.01453 4.19186 4.63872 4.71239 4.74199 4.79034 4.89855 4.97780 5.08947 5.14602 5.15776 5.28210 5.32001 5.40503 5.44383 5.53625 5.60501 5.79011 5.84996 6.08538 6.21773 6.29851 6.36579 6.66351 6.90779 6.96337 7.14665 7.28171 7.29206 7.48689 7.86875 7.98549 8.05641 8.16258 8.68312 9.06257 9.77808 10.79101 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002315 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.069897 B =12092.331586 C =12652.654483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.041 4.041 3 C -0.230 4.230 4 C -0.008 4.008 5 C 0.214 3.786 6 N -0.632 5.632 7 C 0.079 3.921 8 C 0.700 3.300 9 O -0.560 6.560 10 N -0.673 5.673 11 C 0.053 3.947 12 C -0.093 4.093 13 C -0.219 4.219 14 C 0.146 3.854 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.178 4.178 25 C -0.066 4.066 26 N -0.330 5.330 27 O 0.105 5.895 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.120 0.880 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.911 19.509 -11.208 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C -0.252 4.252 4 C -0.168 4.168 5 C 0.089 3.911 6 N -0.371 5.371 7 C -0.065 4.065 8 C 0.401 3.599 9 O -0.435 6.435 10 N -0.322 5.322 11 C -0.040 4.040 12 C -0.113 4.113 13 C -0.239 4.239 14 C 0.092 3.908 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.198 4.198 25 C -0.086 4.086 26 N -0.031 5.031 27 O 0.035 5.965 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.452 17.426 -11.735 27.962 hybrid contribution -0.885 1.112 1.326 1.944 sum -19.337 18.538 -10.410 28.739 Atomic orbital electron populations 1.20320 0.84185 1.04735 1.03881 1.24549 0.96458 0.86462 1.02964 1.22350 0.91334 1.00762 1.10716 1.24058 0.97692 0.90440 1.04621 1.19446 0.89716 0.98986 0.82921 1.46989 1.51432 1.24125 1.14556 1.21755 1.00886 0.87982 0.95875 1.15915 0.79184 0.82574 0.82184 1.90962 1.61385 1.30586 1.60522 1.42430 1.55436 1.21112 1.13219 1.17061 0.98424 0.96178 0.92312 1.20433 0.99685 0.98195 0.93008 1.20940 1.02159 0.99900 1.00923 1.19408 0.90200 0.89182 0.91980 1.83994 1.51405 1.45656 1.27083 1.21298 1.26351 1.14792 0.84259 0.89148 1.25281 0.95966 0.95136 1.00234 1.70052 1.25005 1.17938 1.36821 0.85720 0.78186 0.79026 0.80510 1.19928 1.20304 1.19266 1.20157 1.04803 1.02234 0.92558 1.20770 0.93152 0.95129 0.99557 1.74058 0.96080 1.16459 1.16478 1.84924 1.11521 1.33316 1.66771 0.89876 0.89319 0.89264 0.81359 0.88164 0.87845 0.92201 0.90842 0.91408 0.76769 0.87384 0.85146 0.92079 0.86148 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 36.00 0.38 0.07 16 2 C -0.04 -0.36 7.49 -35.30 -0.26 -0.62 16 3 C -0.23 -1.91 11.06 -39.38 -0.44 -2.34 16 4 C -0.01 -0.09 6.91 -82.10 -0.57 -0.66 16 5 C 0.21 2.19 5.99 -5.19 -0.03 2.16 16 6 N -0.63 -7.11 2.86 -188.74 -0.54 -7.65 16 7 C 0.08 0.52 10.16 59.85 0.61 1.13 16 8 C 0.70 11.17 8.12 -86.92 -0.71 10.46 16 9 O -0.56 -11.37 13.36 5.28 0.07 -11.30 16 10 N -0.67 -10.16 5.18 -14.18 -0.07 -10.23 16 11 C 0.05 1.01 6.30 -83.61 -0.53 0.48 16 12 C -0.09 -1.76 9.96 -39.41 -0.39 -2.15 16 13 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 14 C 0.15 3.70 6.65 -39.09 -0.26 3.44 16 15 O -0.18 -5.24 9.76 0.00 0.00 -5.24 16 16 C -0.39 -11.15 9.48 30.88 0.29 -10.86 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 20 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.18 -4.12 9.98 -39.42 -0.39 -4.52 16 25 C -0.07 -1.39 8.69 -39.41 -0.34 -1.73 16 26 N -0.33 -4.99 12.07 33.42 0.40 -4.59 16 27 O 0.11 1.35 11.20 17.16 0.19 1.54 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.10 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.10 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 36 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 37 H 0.40 4.46 6.62 -40.82 -0.27 4.19 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.86 5.63 -52.49 -0.30 2.57 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 42 H 0.13 2.73 6.22 -52.49 -0.33 2.40 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -37.77 363.58 -6.65 -44.42 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.82 Total: 6.27 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.10 Total: -9.44 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.55 Total: -47.61 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.26 Total: -15.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.77 -6.65 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.804 kcal (2) G-P(sol) polarization free energy of solvation -37.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds