Wall clock time and date at job start Tue Mar 31 2020 16:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35452 * 126.77800 * 2 1 4 4 C 1.41378 * 103.98317 * 180.09298 * 3 2 1 5 5 C 1.50704 * 126.79734 * 179.88520 * 4 3 2 6 6 N 1.46500 * 109.47086 * 94.71331 * 5 4 3 7 7 C 1.46502 * 119.99903 * 269.99926 * 6 5 4 8 8 C 1.34775 * 120.00235 * 89.99546 * 6 5 4 9 9 O 1.21593 * 119.99558 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00133 * 179.97438 * 8 6 5 11 11 C 1.40022 * 119.99972 * 175.43193 * 10 8 6 12 12 C 1.38916 * 120.00202 * 215.14231 * 11 10 8 13 13 C 1.38009 * 119.99844 * 180.02562 * 12 11 10 14 14 C 1.38902 * 120.00511 * 0.02562 * 13 12 11 15 15 O 1.35784 * 120.00081 * 179.97438 * 14 13 12 16 16 C 1.34811 * 116.99947 * 5.37934 * 15 14 13 17 17 H 1.07998 * 120.00136 * 354.96051 * 16 15 14 18 18 C 1.38626 * 119.99913 * 174.95539 * 16 15 14 19 19 N 1.31581 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46995 * 90.00441 * 20 18 16 22 22 H 1.48502 * 109.47415 * 210.00262 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00565 * 20 18 16 24 24 C 1.38903 * 119.99865 * 0.23952 * 14 13 12 25 25 C 1.38008 * 120.00313 * 359.48730 * 24 14 13 26 26 N 1.30171 * 106.39735 * 359.62637 * 4 3 2 27 27 O 1.20920 * 111.60794 * 0.23674 * 26 4 3 28 28 H 1.09000 * 109.47463 * 180.30802 * 1 2 3 29 29 H 1.09000 * 109.47408 * 300.30682 * 1 2 3 30 30 H 1.09004 * 109.47092 * 60.30261 * 1 2 3 31 31 H 1.07999 * 128.00611 * 359.95737 * 3 2 1 32 32 H 1.08997 * 109.47100 * 334.71062 * 5 4 3 33 33 H 1.08997 * 109.46810 * 214.71024 * 5 4 3 34 34 H 1.08997 * 109.46766 * 269.99930 * 7 6 5 35 35 H 1.08996 * 109.46879 * 29.99775 * 7 6 5 36 36 H 1.09003 * 109.47153 * 149.99792 * 7 6 5 37 37 H 0.96994 * 120.00055 * 355.43674 * 10 8 6 38 38 H 1.07994 * 120.00027 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.99776 * 179.97438 * 13 12 11 40 40 H 0.96994 * 119.99886 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00025 * 179.71871 * 24 14 13 42 42 H 1.07998 * 120.00390 * 180.23688 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9210 1.3000 -0.0056 6 7 5.4025 1.4505 1.3698 7 6 5.0034 2.6163 2.1622 8 6 6.2125 0.5164 1.9063 9 8 6.5439 -0.4511 1.2485 10 7 6.6558 0.6551 3.1715 11 6 7.4182 -0.3604 3.7615 12 6 7.2818 -0.6332 5.1167 13 6 8.0337 -1.6338 5.6983 14 6 8.9272 -2.3677 4.9287 15 8 9.6673 -3.3518 5.5010 16 6 9.4078 -3.6406 6.7920 17 1 8.6981 -3.0446 7.3466 18 6 10.0517 -4.7027 7.4076 19 7 10.9166 -5.4287 6.7321 20 14 9.6926 -5.1026 9.1966 21 1 8.5648 -6.0659 9.2718 22 1 10.8986 -5.7027 9.8215 23 1 9.3286 -3.8571 9.9188 24 6 9.0677 -2.0913 3.5747 25 6 8.3118 -1.0945 2.9918 26 7 3.4763 -0.7564 0.0048 27 8 2.3094 -1.0737 0.0063 28 1 -0.3634 -1.0276 0.0055 29 1 -0.3634 0.5186 0.8872 30 1 -0.3633 0.5091 -0.8927 31 1 2.0345 2.1270 -0.0006 32 1 4.7632 2.2848 -0.4451 33 1 5.6607 0.7548 -0.5918 34 1 5.7251 3.4198 2.0151 35 1 4.0165 2.9516 1.8434 36 1 4.9718 2.3449 3.2174 37 1 6.4466 1.4583 3.6733 38 1 6.5880 -0.0618 5.7154 39 1 7.9279 -1.8456 6.7520 40 1 11.3674 -6.1716 7.1630 41 1 9.7658 -2.6589 2.9772 42 1 8.4182 -0.8822 1.9383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043558084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:34 Heat of formation + Delta-G solvation = 26.887269 kcal Electronic energy + Delta-G solvation = -27156.692534 eV Core-core repulsion = 23106.027676 eV Total energy + Delta-G solvation = -4050.664858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.91904 -41.77180 -40.54919 -38.50565 -36.99300 -35.67592 -34.80303 -34.21532 -33.96170 -31.89135 -29.97224 -28.88050 -28.60092 -27.46869 -26.77989 -24.15130 -23.92662 -23.15203 -21.69452 -20.74142 -19.88190 -19.41670 -18.92219 -18.65190 -18.09732 -17.98536 -16.96398 -16.53512 -16.36554 -16.10868 -15.66569 -15.48417 -15.34236 -14.94945 -14.65583 -14.54454 -14.45433 -14.10852 -13.93848 -13.71860 -13.59980 -13.50560 -13.34846 -13.20152 -13.09443 -12.96149 -12.69056 -12.47657 -12.11187 -11.93175 -11.45694 -11.37593 -11.16490 -10.94311 -10.55124 -10.22899 -9.89189 -9.86330 -8.60211 -8.45315 -6.13119 0.50338 0.54534 0.57955 1.06661 1.36046 1.45738 1.54334 1.75952 2.02719 2.19193 2.33063 2.82578 2.91666 3.14918 3.27370 3.51473 3.52864 4.01927 4.11744 4.13613 4.20402 4.21618 4.35467 4.47774 4.51381 4.60031 4.61525 4.70611 4.73836 4.76183 4.87024 4.93121 5.04404 5.04886 5.17926 5.27455 5.30483 5.35981 5.46226 5.55697 5.67325 5.82551 6.02608 6.16951 6.84282 6.98448 7.40811 7.46484 7.79474 8.78120 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002315 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.069897 B =12092.331586 C =12652.654483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.219 4.219 4 C -0.017 4.017 5 C 0.211 3.789 6 N -0.621 5.621 7 C 0.068 3.932 8 C 0.691 3.309 9 O -0.611 6.611 10 N -0.661 5.661 11 C 0.079 3.921 12 C -0.081 4.081 13 C -0.218 4.218 14 C 0.107 3.893 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.107 0.893 18 C -0.027 4.027 19 N -0.923 5.923 20 Si 1.022 2.978 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.248 1.248 24 C -0.190 4.190 25 C -0.073 4.073 26 N -0.395 5.395 27 O 0.076 5.924 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.211 0.789 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.420 0.580 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.272 0.728 41 H 0.110 0.890 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.746 23.841 -10.168 35.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.241 4.241 4 C -0.176 4.176 5 C 0.087 3.913 6 N -0.358 5.358 7 C -0.073 4.073 8 C 0.393 3.607 9 O -0.490 6.490 10 N -0.313 5.313 11 C -0.015 4.015 12 C -0.101 4.101 13 C -0.238 4.238 14 C 0.057 3.943 15 O -0.138 6.138 16 C -0.489 4.489 17 H 0.124 0.876 18 C -0.224 4.224 19 N -0.562 5.562 20 Si 0.841 3.159 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.171 1.171 24 C -0.210 4.210 25 C -0.094 4.094 26 N -0.101 5.101 27 O 0.010 5.990 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.228 0.772 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.260 0.740 38 H 0.176 0.824 39 H 0.152 0.848 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.380 21.879 -10.723 33.083 hybrid contribution 0.075 0.061 0.711 0.718 sum -22.304 21.940 -10.011 32.849 Atomic orbital electron populations 1.20560 0.81008 1.05443 1.05898 1.25487 0.98188 0.85670 1.01310 1.22778 0.89219 1.02466 1.09620 1.24484 0.99479 0.89899 1.03787 1.19720 0.88425 1.01014 0.82186 1.47030 1.49644 1.23990 1.15127 1.22153 1.03209 0.86475 0.95496 1.16214 0.79652 0.82897 0.81913 1.90943 1.63267 1.33091 1.61719 1.42226 1.54687 1.21016 1.13322 1.17170 0.96568 0.95403 0.92349 1.20794 0.99116 0.97069 0.93136 1.21109 1.01556 1.00130 1.00978 1.19834 0.91809 0.89754 0.92948 1.83964 1.53894 1.48046 1.27923 1.21885 1.26955 1.15543 0.84507 0.87581 1.26672 0.95445 0.94574 1.05712 1.70216 1.27218 1.19267 1.39475 0.84543 0.78219 0.79484 0.73662 1.19041 1.19722 1.17097 1.20253 1.05403 1.03108 0.92273 1.20841 0.93566 0.95174 0.99770 1.74073 0.97485 1.18840 1.19676 1.84852 1.11480 1.35119 1.67559 0.89932 0.87316 0.86884 0.77185 0.83018 0.90981 0.89834 0.87886 0.90899 0.73982 0.82412 0.84764 0.91903 0.87184 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 71.23 0.74 0.37 16 2 C -0.04 -0.66 7.49 25.04 0.19 -0.47 16 3 C -0.22 -2.87 11.06 22.40 0.25 -2.62 16 4 C -0.02 -0.37 6.91 43.58 0.30 -0.06 16 5 C 0.21 3.86 5.99 85.63 0.51 4.37 16 6 N -0.62 -12.11 2.86 -869.31 -2.48 -14.59 16 7 C 0.07 0.54 10.16 127.77 1.30 1.84 16 8 C 0.69 21.02 8.12 179.06 1.45 22.47 16 9 O -0.61 -25.25 13.36 -4.01 -0.05 -25.31 16 10 N -0.66 -18.10 5.18 -317.04 -1.64 -19.74 16 11 C 0.08 2.90 6.30 38.16 0.24 3.14 16 12 C -0.08 -2.86 9.96 22.38 0.22 -2.63 16 13 C -0.22 -9.68 9.16 22.37 0.20 -9.47 16 14 C 0.11 5.68 6.65 22.59 0.15 5.83 16 15 O -0.23 -14.53 9.76 -22.93 -0.22 -14.75 16 16 C -0.41 -24.52 9.48 67.91 0.64 -23.88 16 17 H 0.11 5.66 5.20 -2.91 -0.02 5.64 16 18 C -0.03 -1.57 5.49 84.82 0.47 -1.10 16 19 N -0.92 -58.39 13.67 21.61 0.30 -58.09 16 20 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.19 -9.36 9.98 22.37 0.22 -9.13 16 25 C -0.07 -3.15 8.69 22.38 0.19 -2.96 16 26 N -0.40 -12.19 12.07 -49.56 -0.60 -12.79 16 27 O 0.08 1.98 11.20 71.59 0.80 2.78 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.15 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.07 1.79 7.42 -2.39 -0.02 1.78 16 34 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 0.30 8.07 -2.39 -0.02 0.28 16 36 H 0.07 0.54 6.44 -2.39 -0.02 0.53 16 37 H 0.42 7.56 6.62 -92.71 -0.61 6.95 16 38 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.13 5.80 5.63 -2.91 -0.02 5.79 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.11 5.44 8.06 -2.91 -0.02 5.42 16 42 H 0.13 5.61 6.22 -2.91 -0.02 5.59 16 Total: -1.00 -92.60 363.58 5.68 -86.92 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.47 Total: 24.35 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 7.09 Total: -14.32 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.43 Total: -105.21 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: 0.52 Total: -37.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -92.60 5.68 -86.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.804 kcal (2) G-P(sol) polarization free energy of solvation -92.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds