Wall clock time and date at job start Tue Mar 31 2020 16:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28840 * 2 1 4 4 O 1.21304 * 110.24572 * 179.68572 * 3 2 1 5 5 C 1.33636 * 109.81311 * 0.46980 * 4 3 2 6 6 C 1.50702 * 126.54805 * 179.79839 * 5 4 3 7 7 C 1.53002 * 109.47021 * 269.68544 * 6 5 4 8 8 C 1.53002 * 109.46461 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46811 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99994 * 180.02562 * 9 8 7 12 12 C 1.39998 * 119.99662 * 175.48890 * 11 9 8 13 13 C 1.38919 * 120.00019 * 214.84846 * 12 11 9 14 14 C 1.38003 * 119.99717 * 179.77150 * 13 12 11 15 15 C 1.38903 * 120.00157 * 0.47996 * 14 13 12 16 16 O 1.35788 * 119.99961 * 179.74808 * 15 14 13 17 17 C 1.34813 * 116.99511 * 185.36844 * 16 15 14 18 18 H 1.07992 * 120.00571 * 354.96574 * 17 16 15 19 19 C 1.38643 * 119.99229 * 174.96541 * 17 16 15 20 20 N 1.31573 * 119.99876 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99492 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47259 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.46806 * 209.99949 * 21 19 17 24 24 H 1.48494 * 109.47232 * 329.99718 * 21 19 17 25 25 C 1.38908 * 120.00511 * 359.77398 * 15 14 13 26 26 C 1.38006 * 119.99593 * 359.97438 * 25 15 14 27 27 N 1.31131 * 106.89698 * 359.54035 * 5 4 3 28 28 H 1.09007 * 109.47073 * 270.02801 * 1 2 3 29 29 H 1.08998 * 109.47284 * 30.01720 * 1 2 3 30 30 H 1.08994 * 109.47832 * 150.02448 * 1 2 3 31 31 H 1.08997 * 109.47011 * 29.69266 * 6 5 4 32 32 H 1.09004 * 109.46704 * 149.68851 * 6 5 4 33 33 H 1.08997 * 109.47360 * 299.99953 * 7 6 5 34 34 H 1.08996 * 109.46826 * 60.00563 * 7 6 5 35 35 H 1.09000 * 109.47683 * 299.99934 * 8 7 6 36 36 H 1.08999 * 109.47742 * 60.00685 * 8 7 6 37 37 H 0.96995 * 120.00030 * 355.49162 * 11 9 8 38 38 H 1.08002 * 120.00284 * 359.97438 * 13 12 11 39 39 H 1.08006 * 120.00023 * 180.21130 * 14 13 12 40 40 H 0.96998 * 119.99325 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.00321 * 179.97438 * 25 15 14 42 42 H 1.08005 * 119.99358 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0062 5 6 3.5298 -0.6212 0.0007 6 6 4.7969 -1.4371 0.0011 7 6 5.2260 -1.7135 -1.4413 8 6 6.5121 -2.5423 -1.4407 9 6 6.9351 -2.8140 -2.8614 10 8 6.2733 -2.3864 -3.7836 11 7 8.0488 -3.5322 -3.1072 12 6 8.3906 -3.8651 -4.4234 13 6 8.9998 -5.0835 -4.6958 14 6 9.3324 -5.4136 -5.9938 15 6 9.0672 -4.5235 -7.0266 16 8 9.3991 -4.8462 -8.3031 17 6 9.2173 -3.8956 -9.2417 18 1 8.7486 -2.9591 -8.9781 19 6 9.6322 -4.1205 -10.5453 20 7 10.2037 -5.2613 -10.8663 21 14 9.3809 -2.8032 -11.8457 22 1 10.5688 -1.9129 -11.8844 23 1 9.2002 -3.4454 -13.1724 24 1 8.1741 -2.0041 -11.5141 25 6 8.4628 -3.3029 -6.7537 26 6 8.1254 -2.9749 -5.4563 27 7 2.3029 -1.0841 0.0004 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 5.5840 -0.8854 0.5151 32 1 4.6204 -2.3820 0.5151 33 1 4.4388 -2.2652 -1.9552 34 1 5.4025 -0.7686 -1.9552 35 1 7.2995 -1.9910 -0.9267 36 1 6.3352 -3.4872 -0.9269 37 1 8.6133 -3.8184 -2.3723 38 1 9.2101 -5.7738 -3.8922 39 1 9.8030 -6.3623 -6.2061 40 1 10.4943 -5.4184 -11.7783 41 1 8.2570 -2.6107 -7.5566 42 1 7.6559 -2.0257 -5.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046764835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:55 Heat of formation + Delta-G solvation = 24.094682 kcal Electronic energy + Delta-G solvation = -26023.263823 eV Core-core repulsion = 21972.477870 eV Total energy + Delta-G solvation = -4050.785953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.91203 -40.21265 -38.72023 -36.78291 -36.44150 -35.62456 -33.98405 -32.86222 -32.17506 -30.22398 -29.77278 -29.05775 -27.49991 -25.30736 -24.20768 -23.31906 -22.29397 -21.57517 -21.17092 -20.03590 -18.43249 -18.15863 -17.81704 -17.51650 -16.78882 -16.44322 -16.09383 -15.48916 -14.80819 -14.51596 -14.35827 -14.03423 -13.99227 -13.97062 -13.59775 -13.57392 -13.37384 -12.99063 -12.86475 -12.81468 -12.51766 -12.28655 -12.02309 -11.72356 -11.63419 -11.56070 -11.51918 -11.37332 -11.17937 -11.01566 -10.76398 -10.43324 -10.20908 -9.74292 -9.68773 -9.18430 -8.70103 -8.21652 -6.95221 -6.44714 -4.02222 0.79843 1.87013 2.06204 2.20401 2.43365 2.81034 3.14372 3.15463 3.19958 3.21190 3.34298 3.69242 3.97978 4.34342 4.43598 4.49607 4.56487 4.71301 4.90006 4.96011 4.98829 5.05213 5.08343 5.10235 5.20935 5.25375 5.30671 5.52536 5.60830 5.66164 5.71338 5.74531 5.87716 6.13189 6.17183 6.33020 6.71743 6.84588 6.99592 7.08662 7.30097 7.43570 7.66407 7.77756 7.83279 8.00500 8.34206 9.01155 9.70286 10.73159 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.001851 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.186938 B =15120.014954 C =16294.826051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.189 3.811 6 C -0.028 4.028 7 C -0.104 4.104 8 C -0.136 4.136 9 C 0.503 3.497 10 O -0.526 6.526 11 N -0.661 5.661 12 C 0.031 3.969 13 C -0.093 4.093 14 C -0.179 4.179 15 C 0.146 3.854 16 O -0.177 6.177 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.221 4.221 26 C -0.064 4.064 27 N -0.482 5.482 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.270 0.730 41 H 0.130 0.870 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 6.941 24.982 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.097 5.097 4 O 0.019 5.981 5 C -0.032 4.032 6 C -0.067 4.067 7 C -0.143 4.143 8 C -0.176 4.176 9 C 0.290 3.710 10 O -0.402 6.402 11 N -0.305 5.305 12 C -0.061 4.061 13 C -0.113 4.113 14 C -0.198 4.198 15 C 0.092 3.908 16 O -0.080 6.080 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.241 4.241 26 C -0.084 4.084 27 N -0.216 5.216 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.012 7.446 24.019 27.452 hybrid contribution 0.292 0.453 -0.273 0.604 sum -10.720 7.898 23.745 27.224 Atomic orbital electron populations 1.20148 0.82923 1.04833 1.04248 1.25933 1.00677 0.83511 1.00424 1.74648 0.89410 1.23950 1.21654 1.85292 1.22362 1.24825 1.65618 1.28799 0.97053 0.82196 0.95129 1.20328 0.87971 0.98306 1.00096 1.21339 0.97361 1.01948 0.93608 1.21595 0.98888 1.02498 0.94646 1.20624 0.80306 0.78664 0.91441 1.90736 1.53568 1.49829 1.46088 1.43222 1.25060 1.54741 1.07508 1.17260 1.09430 0.95897 0.83532 1.20358 1.00847 0.94136 0.95953 1.19995 1.08569 1.00811 0.90465 1.19420 0.92597 0.92559 0.86194 1.83975 1.73043 1.39432 1.11532 1.21338 1.40717 0.96818 0.87798 0.89016 1.25289 0.96102 0.97805 0.97335 1.70046 1.37055 1.22786 1.19847 0.85710 0.79055 0.79426 0.79269 1.19865 1.20260 1.19151 1.21116 1.07112 0.99036 0.96851 1.20850 0.97593 0.98379 0.91565 1.71912 0.99775 1.29413 1.20541 0.89336 0.89465 0.88923 0.87668 0.86949 0.89907 0.90091 0.88354 0.88296 0.76373 0.86731 0.86064 0.92033 0.85228 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.17 1.71 8.22 -156.38 -1.28 0.43 16 3 N -0.39 -4.42 12.16 30.90 0.38 -4.05 16 4 O 0.08 0.79 11.31 18.12 0.20 1.00 16 5 C 0.19 1.67 7.77 -13.06 -0.10 1.57 16 6 C -0.03 -0.14 5.84 -27.88 -0.16 -0.30 16 7 C -0.10 -0.76 4.49 -26.73 -0.12 -0.88 16 8 C -0.14 -0.85 5.70 -27.88 -0.16 -1.01 16 9 C 0.50 6.15 7.67 -10.98 -0.08 6.06 16 10 O -0.53 -8.99 13.42 5.54 0.07 -8.92 16 11 N -0.66 -8.06 5.34 -9.82 -0.05 -8.11 16 12 C 0.03 0.53 6.30 -83.63 -0.53 0.00 16 13 C -0.09 -1.57 9.96 -39.42 -0.39 -1.96 16 14 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 15 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 16 O -0.18 -5.04 9.76 -0.02 0.00 -5.04 16 17 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 18 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 21 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.22 -4.99 9.16 -39.42 -0.36 -5.35 16 26 C -0.06 -1.27 8.69 -39.42 -0.34 -1.62 16 27 N -0.48 -5.12 11.55 -9.87 -0.11 -5.23 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 3.23 8.82 -40.82 -0.36 2.87 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.96 5.63 -52.49 -0.30 2.66 16 42 H 0.12 2.45 6.23 -52.48 -0.33 2.12 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -36.46 367.48 -6.89 -43.35 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.04 Total: 3.86 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.61 Total: -13.58 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.97 Total: -41.92 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.28 Total: -12.96 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.46 -6.89 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046764835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.440 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds