Wall clock time and date at job start Tue Mar 31 2020 16:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28840 * 2 1 4 4 O 1.21304 * 110.24572 * 179.68572 * 3 2 1 5 5 C 1.33636 * 109.81311 * 0.46980 * 4 3 2 6 6 C 1.50702 * 126.54805 * 179.79839 * 5 4 3 7 7 C 1.53002 * 109.47021 * 269.68544 * 6 5 4 8 8 C 1.53002 * 109.46461 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46811 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99994 * 180.02562 * 9 8 7 12 12 C 1.39998 * 119.99662 * 175.48890 * 11 9 8 13 13 C 1.38919 * 120.00019 * 214.84846 * 12 11 9 14 14 C 1.38003 * 119.99717 * 179.77150 * 13 12 11 15 15 C 1.38903 * 120.00157 * 0.47996 * 14 13 12 16 16 O 1.35788 * 119.99961 * 179.74808 * 15 14 13 17 17 C 1.34813 * 116.99511 * 185.36844 * 16 15 14 18 18 H 1.07992 * 120.00571 * 354.96574 * 17 16 15 19 19 C 1.38643 * 119.99229 * 174.96541 * 17 16 15 20 20 N 1.31573 * 119.99876 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99492 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47259 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.46806 * 209.99949 * 21 19 17 24 24 H 1.48494 * 109.47232 * 329.99718 * 21 19 17 25 25 C 1.38908 * 120.00511 * 359.77398 * 15 14 13 26 26 C 1.38006 * 119.99593 * 359.97438 * 25 15 14 27 27 N 1.31131 * 106.89698 * 359.54035 * 5 4 3 28 28 H 1.09007 * 109.47073 * 270.02801 * 1 2 3 29 29 H 1.08998 * 109.47284 * 30.01720 * 1 2 3 30 30 H 1.08994 * 109.47832 * 150.02448 * 1 2 3 31 31 H 1.08997 * 109.47011 * 29.69266 * 6 5 4 32 32 H 1.09004 * 109.46704 * 149.68851 * 6 5 4 33 33 H 1.08997 * 109.47360 * 299.99953 * 7 6 5 34 34 H 1.08996 * 109.46826 * 60.00563 * 7 6 5 35 35 H 1.09000 * 109.47683 * 299.99934 * 8 7 6 36 36 H 1.08999 * 109.47742 * 60.00685 * 8 7 6 37 37 H 0.96995 * 120.00030 * 355.49162 * 11 9 8 38 38 H 1.08002 * 120.00284 * 359.97438 * 13 12 11 39 39 H 1.08006 * 120.00023 * 180.21130 * 14 13 12 40 40 H 0.96998 * 119.99325 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.00321 * 179.97438 * 25 15 14 42 42 H 1.08005 * 119.99358 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0062 5 6 3.5298 -0.6212 0.0007 6 6 4.7969 -1.4371 0.0011 7 6 5.2260 -1.7135 -1.4413 8 6 6.5121 -2.5423 -1.4407 9 6 6.9351 -2.8140 -2.8614 10 8 6.2733 -2.3864 -3.7836 11 7 8.0488 -3.5322 -3.1072 12 6 8.3906 -3.8651 -4.4234 13 6 8.9998 -5.0835 -4.6958 14 6 9.3324 -5.4136 -5.9938 15 6 9.0672 -4.5235 -7.0266 16 8 9.3991 -4.8462 -8.3031 17 6 9.2173 -3.8956 -9.2417 18 1 8.7486 -2.9591 -8.9781 19 6 9.6322 -4.1205 -10.5453 20 7 10.2037 -5.2613 -10.8663 21 14 9.3809 -2.8032 -11.8457 22 1 10.5688 -1.9129 -11.8844 23 1 9.2002 -3.4454 -13.1724 24 1 8.1741 -2.0041 -11.5141 25 6 8.4628 -3.3029 -6.7537 26 6 8.1254 -2.9749 -5.4563 27 7 2.3029 -1.0841 0.0004 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 5.5840 -0.8854 0.5151 32 1 4.6204 -2.3820 0.5151 33 1 4.4388 -2.2652 -1.9552 34 1 5.4025 -0.7686 -1.9552 35 1 7.2995 -1.9910 -0.9267 36 1 6.3352 -3.4872 -0.9269 37 1 8.6133 -3.8184 -2.3723 38 1 9.2101 -5.7738 -3.8922 39 1 9.8030 -6.3623 -6.2061 40 1 10.4943 -5.4184 -11.7783 41 1 8.2570 -2.6107 -7.5566 42 1 7.6559 -2.0257 -5.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046764835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:54 Heat of formation + Delta-G solvation = -3.210882 kcal Electronic energy + Delta-G solvation = -26024.447882 eV Core-core repulsion = 21972.477870 eV Total energy + Delta-G solvation = -4051.970011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.63674 -41.45404 -40.33970 -38.24460 -37.21564 -36.31394 -35.34010 -34.17939 -33.53567 -31.84825 -30.48474 -29.97826 -28.67695 -27.23976 -25.01932 -24.23241 -23.77125 -22.75152 -21.98624 -21.14292 -19.93304 -19.20443 -19.12754 -18.52297 -18.00212 -17.83791 -16.90538 -16.32507 -16.19909 -16.09988 -15.51420 -15.37665 -15.28915 -14.87989 -14.74233 -14.62681 -14.49796 -14.20477 -13.88347 -13.60449 -13.52430 -13.40154 -13.21228 -13.18441 -12.78234 -12.66778 -12.57162 -12.43165 -12.26852 -12.14535 -12.10384 -11.69102 -11.40026 -11.10623 -10.91916 -10.74314 -10.47931 -9.82531 -8.59047 -8.47660 -6.14262 0.11006 0.52785 0.57943 1.15952 1.33786 1.41686 1.50649 1.75073 1.84062 2.16893 2.26849 2.70619 2.82515 3.06578 3.15292 3.52490 3.69965 3.84153 4.05453 4.08939 4.12886 4.14902 4.37364 4.48848 4.49680 4.53777 4.58639 4.67352 4.69283 4.74345 4.81334 4.89363 4.91682 5.06272 5.08362 5.15612 5.17669 5.31873 5.37602 5.47664 5.63068 5.71301 6.01972 6.20191 6.65046 6.97060 7.13145 7.36503 7.76920 8.74988 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.001851 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.186938 B =15120.014954 C =16294.826051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.158 3.842 3 N -0.416 5.416 4 O 0.066 5.934 5 C 0.192 3.808 6 C -0.020 4.020 7 C -0.101 4.101 8 C -0.120 4.120 9 C 0.497 3.503 10 O -0.580 6.580 11 N -0.649 5.649 12 C 0.063 3.937 13 C -0.077 4.077 14 C -0.181 4.181 15 C 0.104 3.896 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.096 0.904 19 C -0.021 4.021 20 N -0.917 5.917 21 Si 1.016 2.984 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.232 4.232 26 C -0.079 4.079 27 N -0.509 5.509 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.429 0.571 38 H 0.170 0.830 39 H 0.128 0.872 40 H 0.273 0.727 41 H 0.113 0.887 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 7.129 29.078 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 N -0.128 5.128 4 O 0.010 5.990 5 C -0.028 4.028 6 C -0.058 4.058 7 C -0.140 4.140 8 C -0.159 4.159 9 C 0.287 3.713 10 O -0.459 6.459 11 N -0.297 5.297 12 C -0.031 4.031 13 C -0.097 4.097 14 C -0.201 4.201 15 C 0.053 3.947 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.113 0.887 19 C -0.218 4.218 20 N -0.555 5.555 21 Si 0.835 3.165 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.252 4.252 26 C -0.099 4.099 27 N -0.244 5.244 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.269 0.731 38 H 0.188 0.812 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.038 7.633 28.226 31.254 hybrid contribution 0.198 0.400 -1.139 1.224 sum -10.840 8.033 27.087 30.261 Atomic orbital electron populations 1.20329 0.80803 1.05485 1.05581 1.26620 1.02161 0.83262 0.99440 1.74631 0.89967 1.24912 1.23273 1.85246 1.22055 1.25642 1.66015 1.29636 0.97978 0.81892 0.93272 1.20565 0.87138 0.99362 0.98735 1.21234 0.97298 1.00749 0.94736 1.21657 0.99054 1.04712 0.90452 1.21830 0.79164 0.76732 0.93542 1.90740 1.55099 1.51616 1.48467 1.43217 1.25810 1.54633 1.05990 1.17426 1.05629 0.94703 0.85362 1.20824 0.98689 0.94531 0.95650 1.20357 1.08071 1.00461 0.91206 1.19966 0.94457 0.94329 0.85935 1.83934 1.75977 1.40437 1.13172 1.21741 1.41305 0.97276 0.88644 0.88715 1.26517 0.95605 1.00352 0.99362 1.70174 1.39501 1.25248 1.20581 0.84630 0.79467 0.76374 0.76019 1.18616 1.19288 1.18296 1.21106 1.07692 0.98566 0.97856 1.20944 0.98253 0.99326 0.91378 1.71932 1.00689 1.29907 1.21828 0.87571 0.88761 0.88260 0.83958 0.84492 0.92971 0.92219 0.83989 0.84474 0.73122 0.81248 0.85422 0.91788 0.86945 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 0.00 16 2 C 0.16 3.15 8.22 138.46 1.14 4.28 16 3 N -0.42 -9.38 12.16 -60.34 -0.73 -10.12 16 4 O 0.07 1.30 11.31 74.89 0.85 2.15 16 5 C 0.19 3.06 7.77 88.38 0.69 3.75 16 6 C -0.02 -0.11 5.84 29.85 0.17 0.06 16 7 C -0.10 -1.18 4.49 30.60 0.14 -1.05 16 8 C -0.12 -0.84 5.70 29.85 0.17 -0.67 16 9 C 0.50 10.32 7.67 87.66 0.67 11.00 16 10 O -0.58 -19.13 13.42 -3.08 -0.04 -19.17 16 11 N -0.65 -12.75 5.34 -303.37 -1.62 -14.36 16 12 C 0.06 1.96 6.30 38.16 0.24 2.20 16 13 C -0.08 -2.34 9.96 22.38 0.22 -2.12 16 14 C -0.18 -7.37 9.98 22.37 0.22 -7.15 16 15 C 0.10 5.25 6.65 22.59 0.15 5.40 16 16 O -0.23 -13.94 9.76 -22.98 -0.22 -14.16 16 17 C -0.41 -24.77 9.48 67.92 0.64 -24.13 16 18 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 19 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 20 N -0.92 -56.65 13.67 21.61 0.30 -56.36 16 21 Si 1.02 44.15 29.55 68.60 2.03 46.18 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 C -0.23 -10.96 9.16 22.38 0.20 -10.75 16 26 C -0.08 -3.13 8.69 22.38 0.19 -2.93 16 27 N -0.51 -10.25 11.55 -303.22 -3.50 -13.75 16 28 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.14 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.14 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.43 4.04 8.82 -92.71 -0.82 3.22 16 38 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.11 5.54 5.63 -2.91 -0.02 5.52 16 42 H 0.12 4.94 6.23 -2.91 -0.02 4.92 16 Total: -1.00 -89.78 367.48 3.38 -86.40 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.26 Total: 16.04 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 6.07 Total: -22.84 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.56 Total: -94.59 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: 0.58 Total: -31.18 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -89.78 3.38 -86.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046764835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.189 kcal (2) G-P(sol) polarization free energy of solvation -89.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds