Wall clock time and date at job start Tue Mar 31 2020 16:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94906 * 2 1 4 4 C 1.35784 * 109.64625 * 179.97438 * 3 2 1 5 5 C 1.39735 * 133.60201 * 180.02562 * 4 3 2 6 6 C 1.36605 * 119.88505 * 180.02562 * 5 4 3 7 7 C 1.38766 * 120.67061 * 359.97438 * 6 5 4 8 8 C 1.37853 * 120.45492 * 359.97438 * 7 6 5 9 9 C 1.38836 * 119.68764 * 0.02562 * 8 7 6 10 10 N 1.36038 * 124.95277 * 179.97438 * 2 1 3 11 11 C 1.46494 * 126.34751 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.47438 * 270.04874 * 11 10 2 13 13 O 1.20822 * 119.99666 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99926 * 179.97438 * 12 11 10 15 15 C 1.45197 * 116.99646 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 12 17 17 O 1.21277 * 120.00141 * 0.02562 * 16 15 14 18 18 N 1.34787 * 120.00022 * 180.02562 * 16 15 14 19 19 C 1.46492 * 119.99922 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47223 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99630 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00469 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99527 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00519 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47470 * 119.99844 * 24 22 20 27 27 H 1.48505 * 109.47081 * 240.00063 * 24 22 20 28 28 H 1.08999 * 109.46974 * 270.01832 * 1 2 3 29 29 H 1.09006 * 109.47039 * 30.02397 * 1 2 3 30 30 H 1.09000 * 109.46923 * 150.02066 * 1 2 3 31 31 H 1.08000 * 120.05641 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.66329 * 179.72373 * 6 5 4 33 33 H 1.08007 * 119.77548 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.15999 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.46903 * 30.04846 * 11 10 2 36 36 H 1.09005 * 109.47114 * 150.04775 * 11 10 2 37 37 H 1.08995 * 109.47818 * 299.99916 * 15 14 12 38 38 H 1.08998 * 109.47193 * 60.00509 * 15 14 12 39 39 H 0.96992 * 119.99672 * 359.97438 * 18 16 15 40 40 H 1.09000 * 109.47095 * 300.00028 * 19 18 16 41 41 H 1.09000 * 109.47523 * 59.99748 * 19 18 16 42 42 H 0.97002 * 120.00004 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9531 0.7671 0.0012 7 6 5.9931 -0.6200 0.0010 8 6 4.8254 -1.3527 0.0013 9 6 3.6019 -0.6964 0.0014 10 7 2.2863 -1.1150 0.0005 11 6 1.8167 -2.5026 0.0016 12 6 1.6550 -2.9771 1.4228 13 8 1.9067 -2.2327 2.3406 14 8 1.2313 -4.2267 1.6691 15 6 1.0992 -4.6155 3.0618 16 6 0.6154 -6.0406 3.1418 17 8 0.4033 -6.6669 2.1252 18 7 0.4185 -6.6190 4.3432 19 6 -0.0513 -8.0044 4.4209 20 6 -0.1897 -8.4075 5.8663 21 1 0.0489 -7.7023 6.6488 22 6 -0.6198 -9.6769 6.1899 23 7 -0.9098 -10.5357 5.2370 24 14 -0.7907 -10.1768 7.9816 25 1 -0.4049 -9.0375 8.8523 26 1 -2.1995 -10.5564 8.2575 27 1 0.0973 -11.3343 8.2593 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.7390 2.5096 0.0010 32 1 6.8758 1.3284 -0.0028 33 1 6.9456 -1.1291 0.0005 34 1 4.8621 -2.4320 0.0016 35 1 0.8574 -2.5619 -0.5126 36 1 2.5434 -3.1326 -0.5113 37 1 2.0672 -4.5319 3.5558 38 1 0.3815 -3.9604 3.5554 39 1 0.5885 -6.1181 5.1562 40 1 -1.0191 -8.0881 3.9265 41 1 0.6666 -8.6597 3.9276 42 1 -1.2121 -11.4289 5.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047479241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:23 Heat of formation + Delta-G solvation = -44.061569 kcal Electronic energy + Delta-G solvation = -26733.976623 eV Core-core repulsion = 22680.235193 eV Total energy + Delta-G solvation = -4053.741430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59725 -40.75648 -38.87431 -37.75098 -36.66383 -34.65176 -34.35319 -32.49314 -31.80962 -30.95191 -29.69705 -28.25554 -27.81495 -26.59354 -23.00150 -22.51801 -22.41202 -21.80381 -20.26386 -20.04140 -18.36958 -17.93074 -17.74428 -17.14909 -16.92440 -16.53200 -15.74933 -15.65047 -15.34511 -15.03490 -15.02939 -14.47939 -14.30694 -14.23825 -13.73393 -13.45399 -13.37901 -13.18241 -13.03213 -12.67952 -12.62356 -12.21128 -12.07969 -11.88183 -11.86635 -11.76248 -11.19002 -11.04593 -11.01985 -10.90724 -10.62991 -10.40610 -10.23917 -9.49322 -9.31664 -8.85727 -8.61241 -8.37064 -8.08853 -6.25901 -4.33540 0.65257 1.18123 1.72505 1.74559 2.32641 2.58262 3.04017 3.18153 3.25626 3.28427 3.61738 3.75942 3.80506 4.04164 4.09118 4.26121 4.43042 4.46703 4.68248 4.72939 4.84766 4.95822 5.06044 5.08112 5.09801 5.10982 5.15443 5.20412 5.28117 5.42396 5.47044 5.82070 6.01437 6.12812 6.23337 6.24395 6.58312 6.70148 7.12882 7.18790 7.32287 7.37318 7.53916 7.58170 7.84761 8.39495 8.62345 8.85819 9.33141 10.84197 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.001945 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.732799 B =14389.498210 C =14826.112783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.297 3.703 3 N -0.491 5.491 4 C 0.051 3.949 5 C -0.066 4.066 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.108 4.108 9 C 0.054 3.946 10 N -0.481 5.481 11 C 0.122 3.878 12 C 0.440 3.560 13 O -0.490 6.490 14 O -0.324 6.324 15 C 0.050 3.950 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.705 5.705 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.393 0.607 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 21.634 -12.245 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 N -0.210 5.210 4 C -0.066 4.066 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.122 4.122 8 C -0.129 4.129 9 C -0.053 4.053 10 N -0.173 5.173 11 C -0.003 4.003 12 C 0.280 3.720 13 O -0.376 6.376 14 O -0.238 6.238 15 C -0.028 4.028 16 C 0.283 3.717 17 O -0.411 6.411 18 N -0.355 5.355 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.303 21.875 -12.700 26.622 hybrid contribution 0.260 -1.070 1.662 1.993 sum 8.563 20.805 -11.038 25.060 Atomic orbital electron populations 1.20467 0.84140 1.04833 1.04667 1.23668 0.95780 0.80270 0.97096 1.70432 1.00954 1.26855 1.22799 1.19013 0.92071 0.90169 1.05328 1.20015 0.89129 0.99782 0.99635 1.20655 0.97475 0.94367 1.02267 1.20889 0.97231 0.94012 1.00065 1.19993 0.89148 0.99558 1.04213 1.18823 0.84886 0.95319 1.06288 1.44781 1.05165 1.05661 1.61663 1.21105 1.05758 0.81341 0.92083 1.23885 0.74615 0.80727 0.92764 1.90756 1.45355 1.55455 1.46074 1.86531 1.77077 1.30125 1.30086 1.22941 1.03815 0.96307 0.79705 1.19828 0.79826 0.86887 0.85199 1.90713 1.51384 1.64432 1.34610 1.46383 1.65863 1.17265 1.05986 1.19199 0.95398 0.74756 0.97565 1.21234 1.47262 0.98746 0.91182 0.91700 1.24958 0.94734 0.96109 0.98212 1.69980 1.43786 1.06123 1.32233 0.86326 0.77919 0.78649 0.83825 1.19598 1.20725 1.20729 0.89020 0.88177 0.90040 0.85345 0.85299 0.85166 0.86054 0.84159 0.84545 0.88366 0.88317 0.77366 0.95183 0.95198 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.17 36.00 0.37 -0.19 16 2 C 0.30 3.22 7.85 -154.82 -1.22 2.01 16 3 N -0.49 -6.46 11.27 -8.23 -0.09 -6.55 16 4 C 0.05 0.66 7.23 -84.70 -0.61 0.04 16 5 C -0.07 -0.68 10.05 -39.61 -0.40 -1.08 16 6 C -0.13 -1.07 9.96 -39.98 -0.40 -1.47 16 7 C -0.10 -0.87 10.03 -39.53 -0.40 -1.26 16 8 C -0.11 -1.08 10.05 -39.50 -0.40 -1.47 16 9 C 0.05 0.64 6.88 -83.98 -0.58 0.06 16 10 N -0.48 -5.07 2.29 -112.43 -0.26 -5.32 16 11 C 0.12 0.97 6.52 -5.20 -0.03 0.94 16 12 C 0.44 5.15 8.03 36.01 0.29 5.44 16 13 O -0.49 -7.15 16.18 -18.75 -0.30 -7.45 16 14 O -0.32 -4.42 9.75 -45.90 -0.45 -4.86 16 15 C 0.05 0.69 5.94 36.01 0.21 0.91 16 16 C 0.50 9.41 7.91 -10.98 -0.09 9.32 16 17 O -0.53 -12.31 16.50 -14.10 -0.23 -12.54 16 18 N -0.70 -13.94 5.55 -61.48 -0.34 -14.28 16 19 C 0.25 6.36 5.43 -5.20 -0.03 6.33 16 20 C -0.55 -14.30 9.28 -34.44 -0.32 -14.62 16 21 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.88 -25.33 13.29 55.43 0.74 -24.59 16 24 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.35 7.01 -51.93 -0.36 -0.01 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.14 0.67 7.00 -51.93 -0.36 0.31 16 36 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 39 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -36.59 373.93 -9.27 -45.86 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.25 Total: 2.21 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -3.69 Total: 6.58 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.04 Total: -50.75 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.98 Total: -24.86 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.59 -9.27 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047479241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.800 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds