Wall clock time and date at job start Tue Mar 31 2020 16:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94906 * 2 1 4 4 C 1.35784 * 109.64625 * 179.97438 * 3 2 1 5 5 C 1.39735 * 133.60201 * 180.02562 * 4 3 2 6 6 C 1.36605 * 119.88505 * 180.02562 * 5 4 3 7 7 C 1.38766 * 120.67061 * 359.97438 * 6 5 4 8 8 C 1.37853 * 120.45492 * 359.97438 * 7 6 5 9 9 C 1.38836 * 119.68764 * 0.02562 * 8 7 6 10 10 N 1.36038 * 124.95277 * 179.97438 * 2 1 3 11 11 C 1.46494 * 126.34751 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.47438 * 270.04874 * 11 10 2 13 13 O 1.20822 * 119.99666 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99926 * 179.97438 * 12 11 10 15 15 C 1.45197 * 116.99646 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 12 17 17 O 1.21277 * 120.00141 * 0.02562 * 16 15 14 18 18 N 1.34787 * 120.00022 * 180.02562 * 16 15 14 19 19 C 1.46492 * 119.99922 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47223 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99630 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00469 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99527 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00519 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47470 * 119.99844 * 24 22 20 27 27 H 1.48505 * 109.47081 * 240.00063 * 24 22 20 28 28 H 1.08999 * 109.46974 * 270.01832 * 1 2 3 29 29 H 1.09006 * 109.47039 * 30.02397 * 1 2 3 30 30 H 1.09000 * 109.46923 * 150.02066 * 1 2 3 31 31 H 1.08000 * 120.05641 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.66329 * 179.72373 * 6 5 4 33 33 H 1.08007 * 119.77548 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.15999 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.46903 * 30.04846 * 11 10 2 36 36 H 1.09005 * 109.47114 * 150.04775 * 11 10 2 37 37 H 1.08995 * 109.47818 * 299.99916 * 15 14 12 38 38 H 1.08998 * 109.47193 * 60.00509 * 15 14 12 39 39 H 0.96992 * 119.99672 * 359.97438 * 18 16 15 40 40 H 1.09000 * 109.47095 * 300.00028 * 19 18 16 41 41 H 1.09000 * 109.47523 * 59.99748 * 19 18 16 42 42 H 0.97002 * 120.00004 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9531 0.7671 0.0012 7 6 5.9931 -0.6200 0.0010 8 6 4.8254 -1.3527 0.0013 9 6 3.6019 -0.6964 0.0014 10 7 2.2863 -1.1150 0.0005 11 6 1.8167 -2.5026 0.0016 12 6 1.6550 -2.9771 1.4228 13 8 1.9067 -2.2327 2.3406 14 8 1.2313 -4.2267 1.6691 15 6 1.0992 -4.6155 3.0618 16 6 0.6154 -6.0406 3.1418 17 8 0.4033 -6.6669 2.1252 18 7 0.4185 -6.6190 4.3432 19 6 -0.0513 -8.0044 4.4209 20 6 -0.1897 -8.4075 5.8663 21 1 0.0489 -7.7023 6.6488 22 6 -0.6198 -9.6769 6.1899 23 7 -0.9098 -10.5357 5.2370 24 14 -0.7907 -10.1768 7.9816 25 1 -0.4049 -9.0375 8.8523 26 1 -2.1995 -10.5564 8.2575 27 1 0.0973 -11.3343 8.2593 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.7390 2.5096 0.0010 32 1 6.8758 1.3284 -0.0028 33 1 6.9456 -1.1291 0.0005 34 1 4.8621 -2.4320 0.0016 35 1 0.8574 -2.5619 -0.5126 36 1 2.5434 -3.1326 -0.5113 37 1 2.0672 -4.5319 3.5558 38 1 0.3815 -3.9604 3.5554 39 1 0.5885 -6.1181 5.1562 40 1 -1.0191 -8.0881 3.9265 41 1 0.6666 -8.6597 3.9276 42 1 -1.2121 -11.4289 5.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047479241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:22 Heat of formation + Delta-G solvation = -67.498602 kcal Electronic energy + Delta-G solvation = -26734.992929 eV Core-core repulsion = 22680.235193 eV Total energy + Delta-G solvation = -4054.757736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33967 -41.78766 -40.41588 -38.46268 -37.72540 -36.20529 -35.41936 -34.43416 -32.43488 -31.69592 -30.95497 -29.39371 -28.51015 -28.09484 -24.73108 -23.44404 -23.13771 -22.71064 -21.68080 -21.00230 -19.40821 -19.17789 -18.50490 -18.29958 -17.93016 -17.67335 -17.29890 -16.91099 -16.38004 -16.30122 -16.26348 -15.73266 -15.16850 -15.09651 -14.70654 -14.69574 -14.27234 -14.11665 -14.01393 -13.83736 -13.81581 -13.58292 -13.22692 -12.93060 -12.81412 -12.77155 -12.57758 -12.44871 -12.24143 -12.07712 -12.03043 -11.48895 -11.46219 -11.02897 -10.94739 -10.84385 -9.95167 -9.33872 -9.11988 -8.31220 -6.47396 -0.07255 0.43328 0.83490 0.91476 1.43725 1.43826 1.51949 1.55300 1.57993 1.75515 2.31730 2.51231 2.88626 3.04310 3.15650 3.33507 3.45698 3.54623 3.67745 3.94832 3.98694 3.99316 4.02735 4.13086 4.32921 4.41607 4.48118 4.60961 4.64014 4.85087 4.95059 5.01359 5.09831 5.15625 5.20961 5.39882 5.41928 5.52204 5.55712 5.60550 5.81004 5.92809 5.99577 6.37961 6.61559 6.74793 6.81289 7.18526 7.32927 8.80891 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.001945 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.732799 B =14389.498210 C =14826.112783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.289 3.711 3 N -0.529 5.529 4 C 0.016 3.984 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.122 4.122 9 C 0.033 3.967 10 N -0.483 5.483 11 C 0.122 3.878 12 C 0.448 3.552 13 O -0.521 6.521 14 O -0.336 6.336 15 C 0.062 3.938 16 C 0.501 3.499 17 O -0.580 6.580 18 N -0.699 5.699 19 C 0.266 3.734 20 C -0.556 4.556 21 H 0.085 0.915 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.983 3.017 25 H -0.254 1.254 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.412 0.588 40 H -0.006 1.006 41 H -0.006 1.006 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 22.436 -11.397 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.024 3.976 3 N -0.250 5.250 4 C -0.101 4.101 5 C -0.106 4.106 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.142 4.142 9 C -0.074 4.074 10 N -0.174 5.174 11 C -0.001 4.001 12 C 0.290 3.710 13 O -0.409 6.409 14 O -0.251 6.251 15 C -0.015 4.015 16 C 0.287 3.713 17 O -0.461 6.461 18 N -0.351 5.351 19 C 0.144 3.856 20 C -0.594 4.594 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.567 5.567 24 Si 0.807 3.193 25 H -0.178 1.178 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.194 0.806 36 H 0.179 0.821 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.248 0.752 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.197 22.725 -11.840 27.225 hybrid contribution 0.046 -1.267 1.319 1.830 sum 9.243 21.457 -10.521 25.623 Atomic orbital electron populations 1.20647 0.81650 1.06657 1.05069 1.24367 0.97157 0.80083 0.95970 1.70387 1.01661 1.28420 1.24489 1.19482 0.92596 0.91341 1.06632 1.20304 0.89391 1.00377 1.00504 1.21035 0.97868 0.94757 1.00520 1.21318 0.98040 0.94177 0.98535 1.20324 0.89016 1.00522 1.04360 1.19155 0.85965 0.95310 1.06983 1.44912 1.04774 1.06364 1.61397 1.21489 1.08346 0.80405 0.89872 1.24527 0.73124 0.79436 0.93888 1.90751 1.46828 1.55955 1.47354 1.86533 1.77526 1.31399 1.29618 1.22738 1.05335 0.92621 0.80766 1.20609 0.78226 0.88658 0.83844 1.90691 1.53121 1.66161 1.36084 1.46061 1.65909 1.15516 1.07599 1.18633 0.92722 0.77258 0.96966 1.21635 1.46771 0.99327 0.91690 0.89714 1.26026 0.94165 0.96169 1.03150 1.70129 1.44929 1.06697 1.34945 0.85126 0.77760 0.78564 0.77869 1.17759 1.20507 1.20534 0.89116 0.87347 0.87292 0.84758 0.82369 0.82292 0.84593 0.80586 0.82120 0.86171 0.85815 0.75199 0.98761 0.98838 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.17 71.24 0.72 -0.27 16 2 C 0.29 6.12 7.85 137.92 1.08 7.20 16 3 N -0.53 -14.19 11.27 -179.96 -2.03 -16.22 16 4 C 0.02 0.42 7.23 39.45 0.29 0.70 16 5 C -0.09 -1.78 10.05 22.25 0.22 -1.56 16 6 C -0.12 -1.86 9.96 22.01 0.22 -1.64 16 7 C -0.10 -1.51 10.03 22.30 0.22 -1.29 16 8 C -0.12 -2.24 10.05 22.32 0.22 -2.02 16 9 C 0.03 0.76 6.88 38.86 0.27 1.03 16 10 N -0.48 -9.58 2.29 -509.63 -1.17 -10.75 16 11 C 0.12 1.67 6.52 85.63 0.56 2.23 16 12 C 0.45 9.57 8.03 71.24 0.57 10.14 16 13 O -0.52 -14.37 16.18 21.97 0.36 -14.02 16 14 O -0.34 -8.52 9.75 -45.04 -0.44 -8.96 16 15 C 0.06 1.61 5.94 71.24 0.42 2.03 16 16 C 0.50 18.67 7.91 87.66 0.69 19.36 16 17 O -0.58 -27.22 16.50 15.78 0.26 -26.96 16 18 N -0.70 -27.50 5.55 -466.79 -2.59 -30.09 16 19 C 0.27 13.91 5.43 85.63 0.46 14.38 16 20 C -0.56 -29.07 9.28 25.60 0.24 -28.83 16 21 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 24 Si 0.98 41.17 29.54 68.60 2.03 43.20 16 25 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.11 0.65 7.01 -2.39 -0.02 0.63 16 31 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.18 1.10 7.00 -2.39 -0.02 1.08 16 36 H 0.16 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 38 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 39 H 0.41 13.05 8.32 -92.71 -0.77 12.27 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -83.14 373.93 3.66 -79.49 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.29 Total: 16.18 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.66 Total: 22.18 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -5.50 Total: -111.11 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: 0.18 Total: -49.93 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -83.14 3.66 -79.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047479241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.989 kcal (2) G-P(sol) polarization free energy of solvation -83.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds