Wall clock time and date at job start Tue Mar 31 2020 16:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29945 * 126.28620 * 2 1 4 4 O 1.21297 * 110.25406 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.80908 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.55389 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47054 * 269.97862 * 6 5 4 8 8 C 1.52995 * 109.46760 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46549 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00411 * 359.97438 * 9 8 7 11 11 N 1.34788 * 119.99666 * 179.97438 * 9 8 7 12 12 C 1.39921 * 119.99600 * 175.48868 * 11 9 8 13 13 C 1.38972 * 120.03212 * 214.84696 * 12 11 9 14 14 C 1.38150 * 120.06561 * 179.72193 * 13 12 11 15 15 C 1.38172 * 120.13660 * 0.55716 * 14 13 12 16 16 C 1.38904 * 120.07444 * 359.71868 * 15 14 13 17 17 O 1.35749 * 120.03649 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00159 * 5.36436 * 17 16 15 19 19 H 1.07996 * 119.99653 * 354.96838 * 18 17 16 20 20 C 1.38644 * 120.00073 * 174.96397 * 18 17 16 21 21 N 1.31562 * 120.00294 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46682 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47327 * 119.99888 * 22 20 18 25 25 H 1.48504 * 109.47374 * 240.00260 * 22 20 18 26 26 C 1.38708 * 120.03559 * 35.12279 * 12 11 9 27 27 N 1.31135 * 106.89685 * 359.76727 * 5 4 3 28 28 H 1.09003 * 109.47076 * 90.02796 * 1 2 3 29 29 H 1.09004 * 109.46938 * 210.02307 * 1 2 3 30 30 H 1.08990 * 109.46981 * 330.02339 * 1 2 3 31 31 H 1.09000 * 109.46706 * 29.97035 * 6 5 4 32 32 H 1.08995 * 109.47404 * 149.97627 * 6 5 4 33 33 H 1.09007 * 109.46405 * 299.99419 * 7 6 5 34 34 H 1.08995 * 109.47207 * 59.99644 * 7 6 5 35 35 H 1.09000 * 109.46772 * 299.99034 * 8 7 6 36 36 H 1.08995 * 109.47632 * 59.99805 * 8 7 6 37 37 H 0.97001 * 119.99738 * 355.48409 * 11 9 8 38 38 H 1.08001 * 119.96494 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.93295 * 180.25481 * 14 13 12 40 40 H 1.07999 * 119.96254 * 179.74963 * 15 14 13 41 41 H 0.96999 * 119.99869 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.07120 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7125 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4369 0.0003 7 6 5.2256 -1.7133 -1.4423 8 6 6.5116 -2.5421 -1.4423 9 6 6.9333 -2.8148 -2.8632 10 8 6.2703 -2.3887 -3.7850 11 7 8.0474 -3.5324 -3.1096 12 6 8.3879 -3.8661 -4.4251 13 6 8.9982 -5.0845 -4.6978 14 6 9.3295 -5.4171 -5.9971 15 6 9.0659 -4.5353 -7.0277 16 6 8.4613 -3.3135 -6.7609 17 8 8.2032 -2.4475 -7.7739 18 6 8.4556 -2.8779 -9.0265 19 1 8.9208 -3.8398 -9.1834 20 6 8.1177 -2.0858 -10.1130 21 7 7.5513 -0.9138 -9.9218 22 14 8.4666 -2.6824 -11.8484 23 1 9.1035 -4.0228 -11.7923 24 1 7.1930 -2.7715 -12.6067 25 1 9.3803 -1.7277 -12.5258 26 6 8.1220 -2.9787 -5.4575 27 7 2.3030 -1.0841 0.0048 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 5.5844 -0.8851 0.5138 32 1 4.6208 -2.3818 0.5143 33 1 4.4381 -2.2651 -1.9558 34 1 5.4017 -0.7685 -1.9564 35 1 7.2991 -1.9907 -0.9287 36 1 6.3350 -3.4869 -0.9284 37 1 8.6131 -3.8173 -2.3749 38 1 9.2099 -5.7737 -3.8937 39 1 9.7999 -6.3663 -6.2072 40 1 9.3297 -4.7965 -8.0418 41 1 7.3146 -0.3598 -10.6820 42 1 7.6515 -2.0295 -5.2475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049280554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:58 Heat of formation + Delta-G solvation = 25.211250 kcal Electronic energy + Delta-G solvation = -26317.509329 eV Core-core repulsion = 22266.771794 eV Total energy + Delta-G solvation = -4050.737535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.82821 -40.22613 -38.65859 -36.73694 -36.38265 -35.57866 -34.08863 -32.79861 -32.23242 -29.94263 -29.45407 -28.92199 -27.83266 -25.30108 -24.20552 -23.35502 -22.09780 -21.44659 -21.18136 -20.10414 -18.36370 -18.20333 -17.77924 -17.35358 -16.75476 -16.12383 -15.68975 -15.30952 -15.05567 -14.74891 -14.30625 -14.22927 -13.97312 -13.89208 -13.69645 -13.51890 -13.34628 -13.01557 -12.73880 -12.61954 -12.46885 -12.22004 -11.95511 -11.73877 -11.55300 -11.49042 -11.29505 -11.20704 -11.10118 -11.02056 -10.77901 -10.42591 -10.12609 -9.81087 -9.67684 -9.16951 -8.80901 -7.70468 -7.18185 -6.40894 -4.00174 0.88256 1.95033 2.00419 2.34352 2.51474 2.83827 3.14624 3.15221 3.20362 3.22281 3.38147 3.77063 3.99626 4.39634 4.48136 4.56568 4.60495 4.77052 4.95753 5.04141 5.05776 5.09810 5.13408 5.15093 5.24362 5.34211 5.42376 5.60439 5.62612 5.68465 5.79215 5.82608 5.96861 6.10178 6.22762 6.38887 6.69871 6.87824 7.04021 7.08892 7.35530 7.48624 7.68387 7.80167 7.91564 8.03954 8.34558 9.04061 9.75296 10.77068 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002196 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.278471 B =12750.076961 C =14512.490904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.189 3.811 6 C -0.027 4.027 7 C -0.106 4.106 8 C -0.135 4.135 9 C 0.503 3.497 10 O -0.508 6.508 11 N -0.671 5.671 12 C 0.173 3.827 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.246 4.246 16 C 0.166 3.834 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.187 4.187 27 N -0.483 5.483 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.406 0.594 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.269 0.731 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -3.631 22.749 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.096 5.096 4 O 0.020 5.980 5 C -0.032 4.032 6 C -0.066 4.066 7 C -0.145 4.145 8 C -0.175 4.175 9 C 0.289 3.711 10 O -0.381 6.381 11 N -0.316 5.316 12 C 0.080 3.920 13 C -0.257 4.257 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.111 3.889 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.208 4.208 27 N -0.217 5.217 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.241 0.759 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.598 -2.353 21.977 22.801 hybrid contribution 0.638 -0.591 -0.552 1.030 sum -4.960 -2.944 21.426 22.188 Atomic orbital electron populations 1.20146 0.82941 1.04547 1.04489 1.25927 1.00669 0.83525 1.00469 1.74643 0.89410 1.23949 1.21595 1.85295 1.22344 1.24803 1.65578 1.28787 0.97039 0.82218 0.95145 1.20314 0.87998 0.98269 1.00034 1.21365 0.97306 1.02128 0.93690 1.21595 0.99035 1.02527 0.94342 1.20721 0.80403 0.78274 0.91676 1.90821 1.53009 1.48366 1.45949 1.43403 1.25586 1.55115 1.07471 1.17193 0.98579 0.93301 0.82934 1.20270 1.12144 0.96356 0.96947 1.20504 0.97478 0.97891 0.91921 1.21185 1.09000 0.96263 1.00086 1.19157 0.91743 0.88950 0.89052 1.83991 1.73387 1.36605 1.13689 1.21393 1.41192 1.04871 0.79306 0.88928 1.25311 0.96279 0.95439 0.99584 1.70067 1.38063 1.09651 1.31722 0.85640 0.78370 0.78784 0.80559 1.19082 1.20156 1.20164 1.20172 1.09115 1.01673 0.89881 1.71904 0.99768 1.29419 1.20584 0.89177 0.89035 0.89549 0.87663 0.86979 0.89834 0.89892 0.88199 0.88237 0.75938 0.87398 0.87071 0.85472 0.92071 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.08 16 2 C 0.17 1.87 8.22 -156.37 -1.28 0.59 16 3 N -0.39 -4.83 12.16 30.90 0.38 -4.46 16 4 O 0.08 0.89 11.31 18.10 0.20 1.09 16 5 C 0.19 1.86 7.77 -13.06 -0.10 1.76 16 6 C -0.03 -0.16 5.84 -27.88 -0.16 -0.32 16 7 C -0.11 -0.91 4.49 -26.73 -0.12 -1.03 16 8 C -0.13 -0.97 5.70 -27.88 -0.16 -1.13 16 9 C 0.50 6.82 7.67 -10.98 -0.08 6.73 16 10 O -0.51 -9.81 13.42 5.56 0.07 -9.73 16 11 N -0.67 -8.80 5.34 -9.88 -0.05 -8.85 16 12 C 0.17 3.14 6.30 -83.72 -0.53 2.61 16 13 C -0.24 -3.94 9.96 -39.34 -0.39 -4.33 16 14 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 15 C -0.25 -5.41 9.17 -39.36 -0.36 -5.77 16 16 C 0.17 4.18 6.64 -39.13 -0.26 3.92 16 17 O -0.17 -5.16 9.76 0.05 0.00 -5.16 16 18 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.96 13.67 55.48 0.76 -25.21 16 22 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.19 -4.28 8.64 -39.21 -0.34 -4.62 16 27 N -0.48 -5.57 11.55 -9.87 -0.11 -5.69 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.91 8.10 -51.92 -0.42 0.49 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 3.44 8.82 -40.82 -0.36 3.08 16 38 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.13 3.27 6.23 -52.49 -0.33 2.94 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -37.93 367.48 -6.89 -44.81 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.04 Total: 4.82 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.61 Total: -13.05 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.97 Total: -44.20 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.28 Total: -13.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.93 -6.89 -44.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049280554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.025 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds