Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29945 * 126.28620 * 2 1 4 4 O 1.21297 * 110.25406 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.80908 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.55389 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47054 * 269.97862 * 6 5 4 8 8 C 1.52995 * 109.46760 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46549 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00411 * 359.97438 * 9 8 7 11 11 N 1.34788 * 119.99666 * 179.97438 * 9 8 7 12 12 C 1.39921 * 119.99600 * 175.48868 * 11 9 8 13 13 C 1.38972 * 120.03212 * 214.84696 * 12 11 9 14 14 C 1.38150 * 120.06561 * 179.72193 * 13 12 11 15 15 C 1.38172 * 120.13660 * 0.55716 * 14 13 12 16 16 C 1.38904 * 120.07444 * 359.71868 * 15 14 13 17 17 O 1.35749 * 120.03649 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00159 * 5.36436 * 17 16 15 19 19 H 1.07996 * 119.99653 * 354.96838 * 18 17 16 20 20 C 1.38644 * 120.00073 * 174.96397 * 18 17 16 21 21 N 1.31562 * 120.00294 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46682 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47327 * 119.99888 * 22 20 18 25 25 H 1.48504 * 109.47374 * 240.00260 * 22 20 18 26 26 C 1.38708 * 120.03559 * 35.12279 * 12 11 9 27 27 N 1.31135 * 106.89685 * 359.76727 * 5 4 3 28 28 H 1.09003 * 109.47076 * 90.02796 * 1 2 3 29 29 H 1.09004 * 109.46938 * 210.02307 * 1 2 3 30 30 H 1.08990 * 109.46981 * 330.02339 * 1 2 3 31 31 H 1.09000 * 109.46706 * 29.97035 * 6 5 4 32 32 H 1.08995 * 109.47404 * 149.97627 * 6 5 4 33 33 H 1.09007 * 109.46405 * 299.99419 * 7 6 5 34 34 H 1.08995 * 109.47207 * 59.99644 * 7 6 5 35 35 H 1.09000 * 109.46772 * 299.99034 * 8 7 6 36 36 H 1.08995 * 109.47632 * 59.99805 * 8 7 6 37 37 H 0.97001 * 119.99738 * 355.48409 * 11 9 8 38 38 H 1.08001 * 119.96494 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.93295 * 180.25481 * 14 13 12 40 40 H 1.07999 * 119.96254 * 179.74963 * 15 14 13 41 41 H 0.96999 * 119.99869 * 180.02562 * 21 20 18 42 42 H 1.07996 * 120.07120 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7125 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4369 0.0003 7 6 5.2256 -1.7133 -1.4423 8 6 6.5116 -2.5421 -1.4423 9 6 6.9333 -2.8148 -2.8632 10 8 6.2703 -2.3887 -3.7850 11 7 8.0474 -3.5324 -3.1096 12 6 8.3879 -3.8661 -4.4251 13 6 8.9982 -5.0845 -4.6978 14 6 9.3295 -5.4171 -5.9971 15 6 9.0659 -4.5353 -7.0277 16 6 8.4613 -3.3135 -6.7609 17 8 8.2032 -2.4475 -7.7739 18 6 8.4556 -2.8779 -9.0265 19 1 8.9208 -3.8398 -9.1834 20 6 8.1177 -2.0858 -10.1130 21 7 7.5513 -0.9138 -9.9218 22 14 8.4666 -2.6824 -11.8484 23 1 9.1035 -4.0228 -11.7923 24 1 7.1930 -2.7715 -12.6067 25 1 9.3803 -1.7277 -12.5258 26 6 8.1220 -2.9787 -5.4575 27 7 2.3030 -1.0841 0.0048 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 5.5844 -0.8851 0.5138 32 1 4.6208 -2.3818 0.5143 33 1 4.4381 -2.2651 -1.9558 34 1 5.4017 -0.7685 -1.9564 35 1 7.2991 -1.9907 -0.9287 36 1 6.3350 -3.4869 -0.9284 37 1 8.6131 -3.8173 -2.3749 38 1 9.2099 -5.7737 -3.8937 39 1 9.7999 -6.3663 -6.2072 40 1 9.3297 -4.7965 -8.0418 41 1 7.3146 -0.3598 -10.6820 42 1 7.6515 -2.0295 -5.2475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049280554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = -4.474771 kcal Electronic energy + Delta-G solvation = -26318.796611 eV Core-core repulsion = 22266.771794 eV Total energy + Delta-G solvation = -4052.024818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.65213 -41.53251 -40.33221 -38.28374 -37.23682 -36.35846 -35.48967 -34.26757 -33.60009 -31.29854 -30.50943 -30.09514 -28.87082 -27.33210 -25.13630 -24.33503 -23.44766 -22.86685 -22.04843 -21.26391 -19.94796 -19.19733 -19.13419 -18.54775 -17.96360 -17.17811 -16.96029 -16.72286 -16.26097 -16.08312 -15.89118 -15.54230 -15.36544 -14.87624 -14.79147 -14.52423 -14.44308 -14.22148 -13.92237 -13.61013 -13.51331 -13.40435 -13.18015 -12.96334 -12.80415 -12.68515 -12.59486 -12.34946 -12.29064 -12.12340 -12.09510 -11.72868 -11.41965 -11.23044 -10.93911 -10.77383 -10.68845 -9.32387 -8.85265 -8.47747 -6.17400 0.09130 0.45327 0.71737 1.14156 1.33100 1.42505 1.53050 1.70354 1.81860 2.11075 2.22014 2.68609 2.83300 3.05304 3.18000 3.45572 3.71235 3.84140 4.02066 4.07332 4.16327 4.34691 4.37928 4.44407 4.48043 4.51896 4.56718 4.66566 4.70356 4.76110 4.77038 4.85266 4.88979 5.04210 5.09147 5.14072 5.14300 5.28994 5.44858 5.51007 5.65019 5.75702 6.03003 6.23945 6.56923 6.96153 7.11156 7.30744 7.79718 8.76470 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002196 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.278471 B =12750.076961 C =14512.490904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.157 3.843 3 N -0.416 5.416 4 O 0.064 5.936 5 C 0.191 3.809 6 C -0.017 4.017 7 C -0.104 4.104 8 C -0.116 4.116 9 C 0.494 3.506 10 O -0.576 6.576 11 N -0.654 5.654 12 C 0.183 3.817 13 C -0.203 4.203 14 C -0.051 4.051 15 C -0.258 4.258 16 C 0.122 3.878 17 O -0.237 6.237 18 C -0.412 4.412 19 H 0.107 0.893 20 C -0.030 4.030 21 N -0.926 5.926 22 Si 1.024 2.976 23 H -0.246 1.246 24 H -0.270 1.270 25 H -0.267 1.267 26 C -0.216 4.216 27 N -0.508 5.508 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.434 0.566 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.121 0.879 41 H 0.272 0.728 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -7.455 26.028 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 N -0.128 5.128 4 O 0.009 5.991 5 C -0.029 4.029 6 C -0.056 4.056 7 C -0.144 4.144 8 C -0.156 4.156 9 C 0.284 3.716 10 O -0.454 6.454 11 N -0.302 5.302 12 C 0.088 3.912 13 C -0.223 4.223 14 C -0.069 4.069 15 C -0.278 4.278 16 C 0.071 3.929 17 O -0.144 6.144 18 C -0.488 4.488 19 H 0.124 0.876 20 C -0.226 4.226 21 N -0.565 5.565 22 Si 0.843 3.157 23 H -0.169 1.169 24 H -0.196 1.196 25 H -0.192 1.192 26 C -0.238 4.238 27 N -0.242 5.242 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.275 0.725 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.735 -6.237 25.370 26.391 hybrid contribution 0.101 0.429 -1.213 1.291 sum -3.634 -5.808 24.156 25.109 Atomic orbital electron populations 1.20335 0.80693 1.05903 1.05212 1.26648 1.02213 0.83260 0.99390 1.74625 0.89956 1.24989 1.23274 1.85248 1.22096 1.25702 1.66037 1.29656 0.98048 0.81893 0.93295 1.20556 0.87153 0.99527 0.98332 1.21258 0.97454 1.00607 0.95038 1.21675 0.99011 1.04961 0.89904 1.22044 0.79401 0.76388 0.93784 1.90830 1.55060 1.50763 1.48740 1.43374 1.25955 1.54712 1.06148 1.17373 0.96854 0.92805 0.84164 1.20933 1.07888 0.95494 0.98002 1.21056 0.96003 0.98552 0.91313 1.21321 1.09255 0.95874 1.01320 1.19747 0.93644 0.90401 0.89078 1.83956 1.76522 1.39148 1.14795 1.21950 1.41492 1.05634 0.79752 0.87617 1.26732 0.95833 0.95417 1.04623 1.70237 1.41151 1.11788 1.33277 0.84461 0.78505 0.79093 0.73654 1.16920 1.19562 1.19200 1.20226 1.10689 1.01996 0.90850 1.71924 1.00615 1.29869 1.21810 0.88635 0.87586 0.88266 0.83874 0.84063 0.93039 0.92828 0.83761 0.83751 0.72505 0.81487 0.82347 0.86152 0.91935 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.51 71.24 0.75 -0.14 16 2 C 0.16 3.57 8.22 138.47 1.14 4.71 16 3 N -0.42 -10.67 12.16 -60.32 -0.73 -11.40 16 4 O 0.06 1.49 11.31 74.83 0.85 2.33 16 5 C 0.19 3.62 7.77 88.38 0.69 4.30 16 6 C -0.02 -0.15 5.84 29.85 0.17 0.03 16 7 C -0.10 -1.65 4.49 30.60 0.14 -1.51 16 8 C -0.12 -1.19 5.70 29.85 0.17 -1.02 16 9 C 0.49 12.61 7.67 87.66 0.67 13.29 16 10 O -0.58 -23.41 13.42 -3.03 -0.04 -23.45 16 11 N -0.65 -14.93 5.34 -303.54 -1.62 -16.55 16 12 C 0.18 6.27 6.30 38.14 0.24 6.51 16 13 C -0.20 -5.73 9.96 22.42 0.22 -5.50 16 14 C -0.05 -1.64 10.03 22.23 0.22 -1.42 16 15 C -0.26 -11.43 9.17 22.41 0.21 -11.22 16 16 C 0.12 6.55 6.64 22.56 0.15 6.70 16 17 O -0.24 -15.41 9.76 -22.75 -0.22 -15.63 16 18 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 19 H 0.11 5.84 5.20 -2.91 -0.02 5.83 16 20 C -0.03 -1.76 5.49 84.83 0.47 -1.29 16 21 N -0.93 -60.18 13.67 21.61 0.30 -59.89 16 22 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 C -0.22 -10.39 8.64 22.51 0.19 -10.19 16 27 N -0.51 -11.56 11.55 -303.19 -3.50 -15.06 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 34 H 0.05 1.15 8.10 -2.39 -0.02 1.14 16 35 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.43 4.80 8.82 -92.71 -0.82 3.99 16 38 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 41 H 0.27 16.10 8.31 -92.71 -0.77 15.32 16 42 H 0.10 5.39 6.23 -2.91 -0.02 5.37 16 Total: -1.00 -98.38 367.48 3.39 -94.99 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.26 Total: 19.39 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 6.07 Total: -21.33 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -5.56 Total: -102.90 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: 0.58 Total: -36.75 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -98.38 3.39 -94.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049280554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.520 kcal (2) G-P(sol) polarization free energy of solvation -98.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds