Wall clock time and date at job start Tue Mar 31 2020 16:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31133 * 126.54721 * 2 1 4 4 C 1.34496 * 105.61184 * 180.12600 * 3 2 1 5 5 C 1.50697 * 126.28723 * 179.90540 * 4 3 2 6 6 O 1.42898 * 109.47452 * 269.70675 * 5 4 3 7 7 C 1.35711 * 117.00372 * 179.97438 * 6 5 4 8 8 C 1.38998 * 119.91150 * 180.02562 * 7 6 5 9 9 C 1.37696 * 120.08568 * 180.30414 * 8 7 6 10 10 C 1.39738 * 119.91059 * 359.45088 * 9 8 7 11 11 C 1.47608 * 120.08581 * 180.27807 * 10 9 8 12 12 O 1.21590 * 119.99957 * 180.26917 * 11 10 9 13 13 N 1.34776 * 120.00242 * 0.27086 * 11 10 9 14 14 C 1.46497 * 120.00055 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47295 * 324.99820 * 14 13 11 16 16 C 1.53007 * 109.46912 * 85.00053 * 14 13 11 17 17 C 1.50701 * 109.47045 * 204.99803 * 14 13 11 18 18 H 1.07997 * 120.00012 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99768 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99876 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99851 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.46973 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47200 * 119.99523 * 21 19 17 24 24 H 1.48498 * 109.46900 * 240.00009 * 21 19 17 25 25 C 1.39729 * 119.82329 * 0.54857 * 10 9 8 26 26 C 1.37693 * 119.91370 * 359.72412 * 25 10 9 27 27 N 1.29947 * 107.42451 * 359.63828 * 4 3 2 28 28 O 1.21298 * 110.25067 * 0.23159 * 27 4 3 29 29 H 1.09001 * 109.46865 * 180.25003 * 1 2 3 30 30 H 1.08995 * 109.46918 * 300.24936 * 1 2 3 31 31 H 1.09003 * 109.47588 * 60.25313 * 1 2 3 32 32 H 1.09003 * 109.47377 * 149.70726 * 5 4 3 33 33 H 1.08998 * 109.47034 * 29.71320 * 5 4 3 34 34 H 1.08002 * 119.95393 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.04558 * 179.70572 * 9 8 7 36 36 H 0.96998 * 119.99975 * 0.02562 * 13 11 10 37 37 H 1.09004 * 109.47042 * 59.99821 * 16 14 13 38 38 H 1.09001 * 109.46802 * 180.02562 * 16 14 13 39 39 H 1.08997 * 109.46791 * 300.00006 * 16 14 13 40 40 H 0.97002 * 119.99942 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.04126 * 179.71144 * 25 10 9 42 42 H 1.07996 * 119.96101 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 -0.0028 5 6 4.8111 1.3887 -0.0060 6 8 5.2122 1.6406 -1.3542 7 6 6.3431 2.3686 -1.5349 8 6 6.7884 2.6498 -2.8213 9 6 7.9388 3.3828 -3.0087 10 6 8.6527 3.8539 -1.9036 11 6 9.8831 4.6453 -2.1002 12 8 10.5057 5.0503 -1.1375 13 7 10.3164 4.9190 -3.3466 14 6 11.5373 5.7049 -3.5416 15 1 11.6133 6.4586 -2.7580 16 6 12.7546 4.7800 -3.4795 17 6 11.4892 6.3822 -4.8870 18 1 10.6345 6.2417 -5.5321 19 6 12.5364 7.1813 -5.2943 20 7 13.5769 7.3528 -4.5086 21 14 12.4764 8.0215 -6.9617 22 1 11.2070 7.6702 -7.6476 23 1 12.5491 9.4932 -6.7773 24 1 13.6257 7.5684 -7.7858 25 6 8.2017 3.5690 -0.6122 26 6 7.0535 2.8306 -0.4331 27 7 3.4645 -0.7241 0.0034 28 8 2.3029 -1.0735 0.0051 29 1 -0.3633 -1.0277 0.0045 30 1 -0.3633 0.5177 0.8877 31 1 -0.3634 0.5099 -0.8922 32 1 5.5982 0.8395 0.5106 33 1 4.6345 2.3360 0.5035 34 1 6.2337 2.2890 -3.6748 35 1 8.2868 3.5969 -4.0084 36 1 9.8196 4.5963 -4.1146 37 1 12.6785 4.0263 -4.2633 38 1 13.6630 5.3648 -3.6242 39 1 12.7893 4.2901 -2.5065 40 1 14.3134 7.9153 -4.7950 41 1 8.7533 3.9275 0.2445 42 1 6.7045 2.6096 0.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:34 Heat of formation + Delta-G solvation = -1.381506 kcal Electronic energy + Delta-G solvation = -26281.116419 eV Core-core repulsion = 22229.225736 eV Total energy + Delta-G solvation = -4051.890684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.80689 -41.55871 -40.52812 -38.37677 -37.02304 -36.72167 -34.75118 -34.40486 -32.27724 -32.00993 -30.36693 -29.86088 -29.20478 -27.35149 -25.09353 -24.79346 -23.88648 -22.70288 -22.45059 -21.19084 -19.81558 -19.47412 -18.96110 -18.72898 -17.80630 -17.43196 -17.07220 -16.85472 -16.36996 -15.93502 -15.81927 -15.59650 -15.12262 -15.03709 -14.57584 -14.46798 -14.20960 -14.15886 -13.94021 -13.74672 -13.61112 -13.44451 -13.03248 -12.98560 -12.88588 -12.78877 -12.74772 -12.36202 -12.28510 -12.13135 -12.10546 -11.95596 -11.10714 -11.07793 -10.87667 -10.60755 -10.16402 -9.86200 -9.34938 -8.17903 -6.35475 -0.15975 -0.02130 0.26287 0.80107 1.44882 1.45653 1.57972 1.79434 1.90326 1.96678 2.33889 2.58258 2.65351 2.82322 2.85823 3.12821 3.59231 3.75441 3.78350 3.90569 3.93736 4.13219 4.20076 4.31064 4.44187 4.47465 4.62491 4.65940 4.73239 4.88227 4.91334 4.93001 5.03392 5.08087 5.14083 5.15338 5.31701 5.43662 5.47910 5.59375 5.67867 5.89590 6.08266 6.12686 6.71596 6.91898 7.00009 7.30713 7.49396 8.88885 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001803 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.248978 B =15527.890388 C =16080.785223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.195 3.805 3 N -0.502 5.502 4 C 0.155 3.845 5 C 0.148 3.852 6 O -0.317 6.317 7 C 0.151 3.849 8 C -0.153 4.153 9 C -0.040 4.040 10 C -0.181 4.181 11 C 0.542 3.458 12 O -0.601 6.601 13 N -0.699 5.699 14 C 0.268 3.732 15 H 0.000 1.000 16 C -0.133 4.133 17 C -0.546 4.546 18 H 0.075 0.925 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.278 1.278 25 C -0.029 4.029 26 C -0.207 4.207 27 N -0.385 5.385 28 O 0.085 5.915 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.404 0.596 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.133 0.867 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.938 -17.160 7.655 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.024 4.024 3 N -0.236 5.236 4 C -0.117 4.117 5 C 0.072 3.928 6 O -0.229 6.229 7 C 0.105 3.895 8 C -0.172 4.172 9 C -0.059 4.059 10 C -0.185 4.185 11 C 0.331 3.669 12 O -0.485 6.485 13 N -0.347 5.347 14 C 0.164 3.836 15 H 0.018 0.982 16 C -0.192 4.192 17 C -0.584 4.584 18 H 0.093 0.907 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.799 3.201 22 H -0.183 1.183 23 H -0.210 1.210 24 H -0.204 1.204 25 C -0.048 4.048 26 C -0.225 4.225 27 N -0.093 5.093 28 O 0.022 5.978 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.240 0.760 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.151 0.849 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.611 -16.915 8.161 33.393 hybrid contribution 0.481 0.576 -0.690 1.019 sum -27.131 -16.338 7.471 32.540 Atomic orbital electron populations 1.20834 0.76024 1.07998 1.07153 1.29945 1.00561 0.79207 0.92721 1.71905 1.00100 1.30144 1.21493 1.25374 0.95211 0.88225 1.02934 1.20866 0.89465 0.99635 0.82876 1.85993 1.39868 1.68283 1.28754 1.19236 0.85075 0.90469 0.94675 1.20522 0.98018 1.03083 0.95545 1.21301 0.92692 0.93227 0.98662 1.19937 0.97344 1.05328 0.95846 1.18790 0.85001 0.79821 0.83265 1.90690 1.60147 1.55963 1.41662 1.46206 1.27806 1.53630 1.07076 1.18420 0.80677 0.88645 0.95808 0.98190 1.21900 1.01705 0.98702 0.96915 1.21557 1.05148 1.29828 1.01880 0.90717 1.25820 0.94629 0.96738 1.01452 1.70060 1.08435 1.38720 1.38348 0.85257 0.78577 0.77654 0.78599 1.18277 1.20998 1.20402 1.21107 0.94301 0.93220 0.96188 1.21362 0.97519 1.04194 0.99443 1.74666 0.98807 1.15797 1.19992 1.85294 1.10974 1.36311 1.65214 0.85710 0.85962 0.86378 0.87126 0.86547 0.82563 0.83079 0.75973 0.93967 0.91300 0.96995 0.92517 0.84949 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 10.51 71.24 0.75 0.78 16 2 C 0.19 2.24 8.51 88.38 0.75 2.99 16 3 N -0.50 -9.02 11.55 -303.21 -3.50 -12.52 16 4 C 0.16 3.04 7.85 138.46 1.09 4.13 16 5 C 0.15 2.47 5.36 71.24 0.38 2.85 16 6 O -0.32 -6.81 10.11 -90.32 -0.91 -7.72 16 7 C 0.15 3.37 6.70 22.63 0.15 3.52 16 8 C -0.15 -3.43 9.97 22.32 0.22 -3.21 16 9 C -0.04 -1.04 9.53 22.50 0.21 -0.82 16 10 C -0.18 -5.92 5.88 -20.08 -0.12 -6.03 16 11 C 0.54 23.39 7.73 86.72 0.67 24.06 16 12 O -0.60 -31.10 16.00 -4.00 -0.06 -31.16 16 13 N -0.70 -30.39 5.02 -449.19 -2.25 -32.64 16 14 C 0.27 14.30 2.56 44.25 0.11 14.41 16 15 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 16 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 17 C -0.55 -29.25 8.73 25.60 0.22 -29.02 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 21 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 C -0.03 -0.83 9.58 22.50 0.22 -0.61 16 26 C -0.21 -4.48 9.01 22.32 0.20 -4.28 16 27 N -0.38 -7.86 12.16 -60.34 -0.73 -8.60 16 28 O 0.08 1.32 11.31 74.89 0.85 2.16 16 29 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.11 1.48 7.65 -2.39 -0.02 1.46 16 33 H 0.12 1.53 7.65 -2.39 -0.02 1.51 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 36 H 0.40 14.63 6.56 -92.71 -0.61 14.02 16 37 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.13 3.93 7.64 -2.91 -0.02 3.90 16 42 H 0.16 2.40 6.28 -2.91 -0.02 2.38 16 Total: -1.00 -78.12 365.43 2.10 -76.02 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.47 Total: 19.39 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.98 Total: 3.66 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -6.25 Total: -106.63 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.13 Total: -36.72 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -78.12 2.10 -76.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.640 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds