Wall clock time and date at job start Tue Mar 31 2020 16:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35448 * 126.77457 * 2 1 4 4 C 1.41383 * 103.98363 * 180.09929 * 3 2 1 5 5 C 1.50703 * 126.80380 * 179.88465 * 4 3 2 6 6 N 1.46501 * 109.46873 * 94.70971 * 5 4 3 7 7 C 1.34774 * 120.00053 * 180.02562 * 6 5 4 8 8 O 1.21587 * 120.00014 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99873 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99610 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.46761 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.93031 * 90.00159 * 11 10 9 13 13 C 1.38101 * 120.06877 * 180.02562 * 12 11 10 14 14 C 1.38876 * 119.92956 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06861 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53840 * 15 14 13 17 17 H 1.08003 * 120.00029 * 354.94359 * 16 15 14 18 18 C 1.38659 * 120.00122 * 174.94542 * 16 15 14 19 19 N 1.31558 * 119.99705 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47181 * 89.99980 * 20 18 16 22 22 H 1.48498 * 109.47260 * 210.00361 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00179 * 20 18 16 24 24 C 1.38880 * 119.86555 * 0.27954 * 14 13 12 25 25 C 1.38102 * 119.92551 * 359.44514 * 24 14 13 26 26 N 1.30177 * 106.39399 * 359.62529 * 4 3 2 27 27 O 1.20922 * 111.60627 * 0.23884 * 26 4 3 28 28 H 1.08999 * 109.46872 * 180.30372 * 1 2 3 29 29 H 1.09009 * 109.46667 * 300.29775 * 1 2 3 30 30 H 1.08992 * 109.47132 * 60.29421 * 1 2 3 31 31 H 1.07999 * 128.01074 * 359.96051 * 3 2 1 32 32 H 1.08997 * 109.47053 * 334.71719 * 5 4 3 33 33 H 1.08994 * 109.47227 * 214.71111 * 5 4 3 34 34 H 0.97007 * 119.99970 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00345 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.46952 * 60.00577 * 10 9 7 37 37 H 1.08995 * 109.47404 * 299.99896 * 10 9 7 38 38 H 1.07999 * 119.96521 * 0.02562 * 12 11 10 39 39 H 1.07997 * 120.03156 * 179.97438 * 13 12 11 40 40 H 0.96997 * 119.99350 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.04097 * 179.72435 * 24 14 13 42 42 H 1.07997 * 119.96688 * 180.27743 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0058 6 7 5.4026 1.4504 1.3696 7 6 6.5559 2.1042 1.6121 8 8 7.1970 2.5688 0.6894 9 7 6.9991 2.2422 2.8774 10 6 8.2531 2.9524 3.1409 11 6 8.5208 2.9656 4.6240 12 6 9.2479 1.9416 5.2031 13 6 9.4944 1.9505 6.5619 14 6 9.0118 2.9896 7.3468 15 8 9.2529 3.0015 8.6827 16 6 10.0627 2.0385 9.1672 17 1 10.4211 1.2557 8.5150 18 6 10.4353 2.0530 10.5027 19 7 11.2258 1.1135 10.9752 20 14 9.8160 3.4071 11.6305 21 1 8.5333 2.9874 12.2499 22 1 10.8195 3.6625 12.6949 23 1 9.6028 4.6481 10.8432 24 6 8.2775 4.0138 6.7632 25 6 8.0392 4.0020 5.4029 26 7 3.4763 -0.7564 0.0046 27 8 2.3095 -1.0736 0.0061 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3633 0.5185 0.8874 30 1 -0.3633 0.5092 -0.8925 31 1 2.0345 2.1271 -0.0006 32 1 4.7632 2.2849 -0.4452 33 1 5.6607 0.7548 -0.5921 34 1 4.8913 1.0794 2.1058 35 1 6.4883 1.8706 3.6135 36 1 8.1740 3.9767 2.7765 37 1 9.0717 2.4467 2.6289 38 1 9.6232 1.1340 4.5921 39 1 10.0619 1.1503 7.0136 40 1 11.4867 1.1239 11.9094 41 1 7.8971 4.8209 7.3716 42 1 7.4721 4.8004 4.9477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069287865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:38 Heat of formation + Delta-G solvation = 30.711595 kcal Electronic energy + Delta-G solvation = -25933.427901 eV Core-core repulsion = 21882.928879 eV Total energy + Delta-G solvation = -4050.499022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.42062 -40.08086 -39.25579 -37.15364 -36.01963 -34.42230 -34.15303 -33.28368 -32.47459 -30.41704 -30.14151 -28.33649 -27.57892 -25.84303 -24.37864 -23.50296 -22.19259 -21.06261 -20.77373 -20.59075 -18.63209 -18.08587 -17.98761 -17.64361 -17.35383 -16.50527 -15.76539 -15.14288 -14.97229 -14.87524 -14.46471 -14.37375 -14.14539 -14.06715 -13.87889 -13.80520 -13.49082 -13.41432 -13.19365 -12.84231 -12.75451 -12.66847 -12.27636 -11.99948 -11.59833 -11.48988 -10.96066 -10.89733 -10.86328 -10.76863 -10.24327 -10.22435 -9.80490 -9.49636 -9.44171 -8.96300 -8.85846 -8.38693 -7.49536 -6.50585 -4.17631 0.97218 1.55028 1.94609 2.01986 2.62040 2.87858 3.15000 3.17110 3.19578 3.33794 3.62816 3.94540 4.15863 4.18528 4.48015 4.53337 4.67577 4.72941 4.77421 4.84278 5.02056 5.05744 5.12349 5.16904 5.31769 5.36385 5.41501 5.55917 5.56154 5.73641 5.85818 6.02339 6.15053 6.24496 6.44307 6.51458 6.67009 6.77113 6.93595 7.12130 7.18535 7.49143 7.69942 7.78697 7.92676 7.94097 8.52052 8.83826 9.44359 10.56537 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.001825 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.197441 B =15342.460651 C =16059.243637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.032 4.032 3 C -0.222 4.222 4 C -0.001 4.001 5 C 0.222 3.778 6 N -0.746 5.746 7 C 0.705 3.295 8 O -0.594 6.594 9 N -0.736 5.736 10 C 0.196 3.804 11 C -0.206 4.206 12 C -0.051 4.051 13 C -0.225 4.225 14 C 0.167 3.833 15 O -0.213 6.213 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.196 4.196 25 C -0.055 4.055 26 N -0.347 5.347 27 O 0.107 5.893 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.398 0.602 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.281 0.719 41 H 0.118 0.882 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.641 0.414 -20.158 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.244 4.244 4 C -0.160 4.160 5 C 0.097 3.903 6 N -0.404 5.404 7 C 0.405 3.595 8 O -0.473 6.473 9 N -0.391 5.391 10 C 0.074 3.926 11 C -0.208 4.208 12 C -0.070 4.070 13 C -0.244 4.244 14 C 0.114 3.886 15 O -0.117 6.117 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.512 5.512 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.215 4.215 25 C -0.074 4.074 26 N -0.049 5.049 27 O 0.037 5.963 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.192 0.808 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.077 -0.112 -20.629 28.098 hybrid contribution -0.901 0.713 1.324 1.753 sum -19.977 0.601 -19.305 27.787 Atomic orbital electron populations 1.20376 0.83767 1.04890 1.04293 1.24579 0.96550 0.86010 1.02420 1.22454 0.91024 1.01281 1.09593 1.23561 0.97248 0.90163 1.04981 1.19220 0.88498 0.98816 0.83719 1.45026 1.24996 1.61869 1.08494 1.15909 0.80647 0.79129 0.83834 1.90924 1.58307 1.54688 1.43352 1.45470 1.26600 1.61036 1.05993 1.19865 0.84257 0.96322 0.92192 1.19294 1.08334 0.99082 0.94053 1.20718 0.95660 0.96462 0.94164 1.21285 1.07589 1.01567 0.93930 1.19187 0.92769 0.92985 0.83692 1.83570 1.59946 1.50524 1.17673 1.20792 1.25563 1.04507 0.95835 0.87491 1.24496 0.95267 0.97719 0.96496 1.69645 1.32739 1.32650 1.16161 0.86165 0.78655 0.82276 0.79731 1.19824 1.20703 1.18309 1.20211 1.06688 0.99938 0.94663 1.20541 0.97434 0.96920 0.92519 1.73934 0.96973 1.16274 1.17670 1.84868 1.11254 1.33322 1.66852 0.89738 0.88956 0.89011 0.80825 0.89151 0.89793 0.76876 0.76824 0.91513 0.91530 0.87058 0.84787 0.90903 0.86370 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.03 -0.19 7.49 -35.30 -0.26 -0.46 16 3 C -0.22 -1.44 11.06 -39.38 -0.44 -1.88 16 4 C 0.00 -0.01 6.70 -82.10 -0.55 -0.56 16 5 C 0.22 2.11 6.26 -5.19 -0.03 2.07 16 6 N -0.75 -7.60 5.55 -66.42 -0.37 -7.97 16 7 C 0.70 9.34 8.57 -86.92 -0.74 8.60 16 8 O -0.59 -10.05 16.34 5.29 0.09 -9.97 16 9 N -0.74 -9.02 5.55 -66.41 -0.37 -9.38 16 10 C 0.20 2.67 5.80 -5.19 -0.03 2.64 16 11 C -0.21 -3.15 5.25 -104.57 -0.55 -3.70 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.22 -4.59 9.17 -39.40 -0.36 -4.95 16 14 C 0.17 3.66 6.65 -39.11 -0.26 3.40 16 15 O -0.21 -5.42 8.59 0.05 0.00 -5.42 16 16 C -0.39 -10.71 9.95 30.89 0.31 -10.41 16 17 H 0.11 2.99 5.44 -52.48 -0.29 2.70 16 18 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 19 N -0.87 -24.71 13.96 55.48 0.77 -23.94 16 20 Si 0.91 21.10 28.62 -169.99 -4.86 16.24 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 24 C -0.20 -3.63 9.99 -39.39 -0.39 -4.02 16 25 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 26 N -0.35 -3.65 12.07 33.43 0.40 -3.24 16 27 O 0.11 0.95 11.20 17.18 0.19 1.14 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.10 8.14 -51.92 -0.42 -0.33 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 3.39 8.48 -40.82 -0.35 3.04 16 35 H 0.40 4.27 8.48 -40.82 -0.35 3.92 16 36 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 40 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -32.46 370.85 -7.41 -39.87 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.05 Total: 6.96 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.80 Total: -9.88 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.44 Total: -44.54 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.28 Total: -14.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.46 -7.41 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069287865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.583 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds