Wall clock time and date at job start Tue Mar 31 2020 16:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35448 * 126.77457 * 2 1 4 4 C 1.41383 * 103.98363 * 180.09929 * 3 2 1 5 5 C 1.50703 * 126.80380 * 179.88465 * 4 3 2 6 6 N 1.46501 * 109.46873 * 94.70971 * 5 4 3 7 7 C 1.34774 * 120.00053 * 180.02562 * 6 5 4 8 8 O 1.21587 * 120.00014 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99873 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99610 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.46761 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.93031 * 90.00159 * 11 10 9 13 13 C 1.38101 * 120.06877 * 180.02562 * 12 11 10 14 14 C 1.38876 * 119.92956 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06861 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53840 * 15 14 13 17 17 H 1.08003 * 120.00029 * 354.94359 * 16 15 14 18 18 C 1.38659 * 120.00122 * 174.94542 * 16 15 14 19 19 N 1.31558 * 119.99705 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47181 * 89.99980 * 20 18 16 22 22 H 1.48498 * 109.47260 * 210.00361 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00179 * 20 18 16 24 24 C 1.38880 * 119.86555 * 0.27954 * 14 13 12 25 25 C 1.38102 * 119.92551 * 359.44514 * 24 14 13 26 26 N 1.30177 * 106.39399 * 359.62529 * 4 3 2 27 27 O 1.20922 * 111.60627 * 0.23884 * 26 4 3 28 28 H 1.08999 * 109.46872 * 180.30372 * 1 2 3 29 29 H 1.09009 * 109.46667 * 300.29775 * 1 2 3 30 30 H 1.08992 * 109.47132 * 60.29421 * 1 2 3 31 31 H 1.07999 * 128.01074 * 359.96051 * 3 2 1 32 32 H 1.08997 * 109.47053 * 334.71719 * 5 4 3 33 33 H 1.08994 * 109.47227 * 214.71111 * 5 4 3 34 34 H 0.97007 * 119.99970 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00345 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.46952 * 60.00577 * 10 9 7 37 37 H 1.08995 * 109.47404 * 299.99896 * 10 9 7 38 38 H 1.07999 * 119.96521 * 0.02562 * 12 11 10 39 39 H 1.07997 * 120.03156 * 179.97438 * 13 12 11 40 40 H 0.96997 * 119.99350 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.04097 * 179.72435 * 24 14 13 42 42 H 1.07997 * 119.96688 * 180.27743 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0058 6 7 5.4026 1.4504 1.3696 7 6 6.5559 2.1042 1.6121 8 8 7.1970 2.5688 0.6894 9 7 6.9991 2.2422 2.8774 10 6 8.2531 2.9524 3.1409 11 6 8.5208 2.9656 4.6240 12 6 9.2479 1.9416 5.2031 13 6 9.4944 1.9505 6.5619 14 6 9.0118 2.9896 7.3468 15 8 9.2529 3.0015 8.6827 16 6 10.0627 2.0385 9.1672 17 1 10.4211 1.2557 8.5150 18 6 10.4353 2.0530 10.5027 19 7 11.2258 1.1135 10.9752 20 14 9.8160 3.4071 11.6305 21 1 8.5333 2.9874 12.2499 22 1 10.8195 3.6625 12.6949 23 1 9.6028 4.6481 10.8432 24 6 8.2775 4.0138 6.7632 25 6 8.0392 4.0020 5.4029 26 7 3.4763 -0.7564 0.0046 27 8 2.3095 -1.0736 0.0061 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3633 0.5185 0.8874 30 1 -0.3633 0.5092 -0.8925 31 1 2.0345 2.1271 -0.0006 32 1 4.7632 2.2849 -0.4452 33 1 5.6607 0.7548 -0.5921 34 1 4.8913 1.0794 2.1058 35 1 6.4883 1.8706 3.6135 36 1 8.1740 3.9767 2.7765 37 1 9.0717 2.4467 2.6289 38 1 9.6232 1.1340 4.5921 39 1 10.0619 1.1503 7.0136 40 1 11.4867 1.1239 11.9094 41 1 7.8971 4.8209 7.3716 42 1 7.4721 4.8004 4.9477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069287865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:37 Heat of formation + Delta-G solvation = 8.227717 kcal Electronic energy + Delta-G solvation = -25934.402875 eV Core-core repulsion = 21882.928879 eV Total energy + Delta-G solvation = -4051.473996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.02810 -41.22774 -40.78236 -38.68890 -36.87074 -35.63927 -34.69295 -34.45055 -33.95486 -31.89304 -31.50971 -28.80692 -28.44064 -27.48270 -25.79495 -24.10858 -23.72414 -22.21047 -21.97734 -21.35708 -19.88544 -19.55814 -19.10232 -18.72820 -18.22009 -17.49712 -16.88403 -16.57182 -16.25913 -15.92377 -15.70157 -15.68089 -15.42776 -15.18160 -14.91473 -14.77071 -14.48307 -14.30759 -14.08662 -13.99709 -13.94092 -13.74997 -13.30875 -13.17521 -13.10911 -12.59219 -12.47616 -12.32004 -12.15790 -11.94188 -11.69931 -11.31391 -11.23070 -10.91978 -10.46472 -10.28982 -9.87238 -9.81192 -9.11712 -8.51517 -6.24819 0.38321 0.49355 0.53822 0.99980 1.32082 1.35854 1.51747 1.90655 2.10393 2.19620 2.26977 2.74106 2.98092 3.01066 3.13978 3.39892 3.44646 3.84218 4.00954 4.07774 4.13384 4.22452 4.27697 4.44459 4.53058 4.54130 4.61906 4.73035 4.77435 4.81420 4.91019 4.95004 4.97939 5.21352 5.26808 5.28565 5.32886 5.44389 5.52724 5.70201 5.77856 5.87375 5.90052 6.18474 6.82380 6.98835 7.22081 7.50006 7.55031 8.59712 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.001825 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.197441 B =15342.460651 C =16059.243637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.025 4.025 3 C -0.225 4.225 4 C -0.008 4.008 5 C 0.225 3.775 6 N -0.733 5.733 7 C 0.706 3.294 8 O -0.631 6.631 9 N -0.729 5.729 10 C 0.202 3.798 11 C -0.173 4.173 12 C -0.050 4.050 13 C -0.240 4.240 14 C 0.129 3.871 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.082 0.918 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.191 4.191 25 C -0.042 4.042 26 N -0.384 5.384 27 O 0.094 5.906 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.408 0.592 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.285 0.715 41 H 0.132 0.868 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.635 2.423 -21.971 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.247 4.247 4 C -0.166 4.166 5 C 0.100 3.900 6 N -0.390 5.390 7 C 0.406 3.594 8 O -0.512 6.512 9 N -0.384 5.384 10 C 0.078 3.922 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.259 4.259 14 C 0.080 3.920 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.794 3.206 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.185 1.185 24 C -0.210 4.210 25 C -0.061 4.061 26 N -0.088 5.088 27 O 0.025 5.975 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.216 0.784 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.243 0.757 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.150 0.850 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.129 1.877 -22.473 31.595 hybrid contribution -0.134 0.083 1.464 1.472 sum -22.263 1.960 -21.009 30.674 Atomic orbital electron populations 1.20608 0.80854 1.05908 1.05866 1.25327 0.98011 0.85063 1.00468 1.22748 0.89790 1.02567 1.09563 1.23603 0.97828 0.90012 1.05190 1.19204 0.88518 0.99252 0.83001 1.44900 1.24073 1.60775 1.09270 1.15952 0.80987 0.79044 0.83442 1.90908 1.59542 1.56321 1.44429 1.45217 1.26181 1.60878 1.06151 1.19773 0.84878 0.97250 0.90254 1.19539 1.05342 0.97511 0.95060 1.20921 0.95568 0.97675 0.92739 1.21265 1.08099 1.01010 0.95513 1.19751 0.94491 0.94772 0.83024 1.83517 1.61272 1.50492 1.19566 1.20705 1.26197 1.04717 0.96014 0.90077 1.25314 0.95645 1.00073 0.97891 1.69733 1.34897 1.34750 1.16807 0.85196 0.78516 0.79111 0.77785 1.18988 1.19427 1.18498 1.20529 1.05383 0.99088 0.96047 1.20964 0.96389 0.97577 0.91143 1.73930 0.98055 1.17280 1.19509 1.84825 1.11131 1.34463 1.67066 0.89069 0.87355 0.87175 0.78438 0.88072 0.91382 0.75731 0.75689 0.90339 0.91717 0.85065 0.87382 0.90545 0.84965 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 10.45 71.24 0.74 0.66 16 2 C -0.03 -0.25 7.49 25.04 0.19 -0.06 16 3 C -0.22 -2.40 11.06 22.40 0.25 -2.15 16 4 C -0.01 -0.14 6.70 43.58 0.29 0.15 16 5 C 0.23 3.97 6.26 85.63 0.54 4.51 16 6 N -0.73 -13.47 5.55 -482.30 -2.68 -16.14 16 7 C 0.71 17.01 8.57 179.06 1.53 18.54 16 8 O -0.63 -20.11 16.34 -3.99 -0.07 -20.18 16 9 N -0.73 -15.48 5.55 -482.28 -2.68 -18.16 16 10 C 0.20 4.74 5.80 85.63 0.50 5.24 16 11 C -0.17 -4.72 5.25 -19.83 -0.10 -4.83 16 12 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 13 C -0.24 -10.03 9.17 22.39 0.21 -9.82 16 14 C 0.13 5.73 6.65 22.58 0.15 5.88 16 15 O -0.24 -12.67 8.59 -22.72 -0.20 -12.87 16 16 C -0.40 -23.08 9.95 67.92 0.68 -22.40 16 17 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 18 C 0.01 0.54 5.49 84.83 0.47 1.01 16 19 N -0.92 -54.41 13.96 21.61 0.30 -54.11 16 20 Si 0.97 44.47 28.62 68.60 1.96 46.43 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 24 C -0.19 -6.69 9.99 22.39 0.22 -6.47 16 25 C -0.04 -1.15 9.69 22.25 0.22 -0.94 16 26 N -0.38 -7.87 12.07 -49.54 -0.60 -8.47 16 27 O 0.09 1.57 11.20 71.64 0.80 2.37 16 28 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 6.03 8.48 -92.70 -0.79 5.24 16 35 H 0.41 7.31 8.48 -92.71 -0.79 6.53 16 36 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.11 5.06 5.64 -2.91 -0.02 5.05 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -74.37 370.85 2.45 -71.92 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.48 Total: 21.31 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 6.09 Total: -12.10 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -5.65 Total: -96.88 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: 0.54 Total: -30.67 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.96 Total: 46.43 kcal Total: -74.37 2.45 -71.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069287865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.147 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds