Wall clock time and date at job start Tue Mar 31 2020 16:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31124 * 126.55109 * 2 1 4 4 C 1.34501 * 105.61533 * 179.91830 * 3 2 1 5 5 C 1.50692 * 126.29059 * 180.12835 * 4 3 2 6 6 O 1.42903 * 109.47339 * 270.23745 * 5 4 3 7 7 C 1.35652 * 117.00078 * 180.02562 * 6 5 4 8 8 C 1.38704 * 120.15359 * 359.97438 * 7 6 5 9 9 C 1.38049 * 120.08574 * 179.97438 * 8 7 6 10 10 C 1.38553 * 120.39093 * 0.05068 * 9 8 7 11 11 C 1.37786 * 120.30075 * 359.97389 * 10 9 8 12 12 C 1.39710 * 119.90369 * 359.72567 * 11 10 9 13 13 C 1.47540 * 120.18877 * 180.29815 * 12 11 10 14 14 O 1.21584 * 119.99887 * 130.88428 * 13 12 11 15 15 N 1.34774 * 120.00080 * 310.88150 * 13 12 11 16 16 C 1.46507 * 119.99692 * 4.41683 * 15 13 12 17 17 C 1.46491 * 120.00178 * 184.41762 * 15 13 12 18 18 C 1.50703 * 109.47439 * 89.99993 * 17 15 13 19 19 H 1.07998 * 119.99420 * 0.02562 * 18 17 15 20 20 C 1.37867 * 120.00494 * 179.97438 * 18 17 15 21 21 N 1.31522 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00372 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46801 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47139 * 120.00126 * 22 20 18 25 25 H 1.48491 * 109.47518 * 240.00420 * 22 20 18 26 26 N 1.29954 * 107.42130 * 0.35025 * 4 3 2 27 27 O 1.21301 * 110.24661 * 359.77763 * 26 4 3 28 28 H 1.08993 * 109.47618 * 179.71252 * 1 2 3 29 29 H 1.09000 * 109.47110 * 299.71236 * 1 2 3 30 30 H 1.09004 * 109.46994 * 59.70853 * 1 2 3 31 31 H 1.09003 * 109.47463 * 30.23703 * 5 4 3 32 32 H 1.08996 * 109.47235 * 150.24126 * 5 4 3 33 33 H 1.08006 * 119.95594 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.80471 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.84818 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.04334 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.46820 * 93.02398 * 16 15 13 38 38 H 1.09000 * 109.46902 * 213.01897 * 16 15 13 39 39 H 1.08997 * 109.47141 * 333.01975 * 16 15 13 40 40 H 1.09009 * 109.47333 * 209.99902 * 17 15 13 41 41 H 1.09002 * 109.47332 * 329.99779 * 17 15 13 42 42 H 0.97000 * 120.00433 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5728 0.0018 5 6 4.8111 1.3885 0.0053 6 8 5.2113 1.6527 -1.3408 7 6 6.3423 2.3811 -1.5154 8 6 7.0555 2.8349 -0.4158 9 6 8.2066 3.5756 -0.5951 10 6 8.6576 3.8722 -1.8711 11 6 7.9613 3.4299 -2.9748 12 6 6.7983 2.6741 -2.8078 13 6 6.0515 2.1917 -3.9852 14 8 5.7166 1.0251 -4.0567 15 7 5.7404 3.0443 -4.9816 16 6 6.2264 4.4258 -4.9420 17 6 4.9164 2.5896 -6.1042 18 6 3.4619 2.8258 -5.7879 19 1 3.1798 3.2706 -4.8450 20 6 2.4917 2.4752 -6.7024 21 7 2.8353 1.9340 -7.8508 22 14 0.6889 2.7673 -6.3100 23 1 0.5689 3.3829 -4.9639 24 1 0.1028 3.6793 -7.3250 25 1 -0.0381 1.4727 -6.3292 26 7 3.4645 -0.7243 -0.0047 27 8 2.3028 -1.0736 -0.0059 28 1 -0.3634 -1.0276 -0.0052 29 1 -0.3633 0.5094 0.8925 30 1 -0.3633 0.5184 -0.8874 31 1 4.6351 2.3311 0.5237 32 1 5.5986 0.8344 0.5162 33 1 6.7098 2.6084 0.5821 34 1 8.7586 3.9263 0.2644 35 1 9.5590 4.4526 -2.0012 36 1 8.3169 3.6631 -3.9675 37 1 7.1685 4.4952 -5.4858 38 1 5.4905 5.0833 -5.4048 39 1 6.3819 4.7267 -3.9060 40 1 5.1876 3.1447 -7.0023 41 1 5.0839 1.5255 -6.2704 42 1 2.1526 1.6870 -8.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073492094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:21 Heat of formation + Delta-G solvation = 39.706765 kcal Electronic energy + Delta-G solvation = -28212.854945 eV Core-core repulsion = 24162.745983 eV Total energy + Delta-G solvation = -4050.108962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.70369 -40.47016 -38.60308 -37.32566 -35.94875 -34.71765 -33.76949 -32.65304 -31.23062 -30.25606 -29.13264 -28.24245 -27.57563 -25.87041 -23.96655 -23.80704 -22.67005 -21.98172 -21.36281 -19.27110 -18.40087 -17.77204 -17.62657 -16.60886 -16.47422 -16.23485 -15.93966 -15.20692 -14.97744 -14.93933 -14.49266 -14.33106 -14.05491 -13.84502 -13.62867 -13.29753 -12.84829 -12.76517 -12.63124 -12.28652 -12.22605 -12.08139 -11.85666 -11.68614 -11.60812 -11.29430 -11.16827 -11.09128 -11.04527 -10.82724 -10.56272 -10.12028 -10.03507 -9.57183 -9.04663 -8.81263 -8.39848 -8.21862 -7.56743 -6.00130 -4.04075 1.02904 1.10392 1.38287 1.88522 2.71578 3.11452 3.31050 3.36415 3.38838 3.44620 3.64599 3.77729 3.88463 4.14137 4.47739 4.59817 4.73136 4.79874 4.86761 4.98051 5.02962 5.09224 5.21147 5.27803 5.30684 5.34996 5.39824 5.52403 5.67404 5.72807 5.84760 5.86305 5.96608 6.17194 6.25419 6.28604 6.40937 6.67576 7.09310 7.32377 7.50187 7.60633 7.97268 8.04983 8.28626 8.46270 8.95636 9.15593 9.60553 11.08077 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.006695 B = 0.005977 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4181.326212 B = 4683.500494 C = 8204.976800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.181 3.819 3 N -0.468 5.468 4 C 0.170 3.830 5 C 0.154 3.846 6 O -0.283 6.283 7 C 0.174 3.826 8 C -0.218 4.218 9 C -0.067 4.067 10 C -0.164 4.164 11 C -0.053 4.053 12 C -0.143 4.143 13 C 0.553 3.447 14 O -0.526 6.526 15 N -0.597 5.597 16 C 0.080 3.920 17 C 0.245 3.755 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 N -0.357 5.357 27 O 0.087 5.913 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 2.896 18.976 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 N -0.202 5.202 4 C -0.103 4.103 5 C 0.077 3.923 6 O -0.194 6.194 7 C 0.126 3.874 8 C -0.237 4.237 9 C -0.086 4.086 10 C -0.182 4.182 11 C -0.071 4.071 12 C -0.147 4.147 13 C 0.339 3.661 14 O -0.403 6.403 15 N -0.328 5.328 16 C -0.064 4.064 17 C 0.126 3.874 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 N -0.063 5.063 27 O 0.023 5.977 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.831 2.059 18.570 19.298 hybrid contribution -1.119 0.256 0.238 1.172 sum 3.712 2.315 18.808 19.310 Atomic orbital electron populations 1.20429 0.79942 1.05733 1.05896 1.28852 0.99010 0.80418 0.95695 1.71848 0.99941 1.28925 1.19491 1.25038 0.94440 0.88090 1.02714 1.20573 0.89370 0.98146 0.84166 1.86294 1.39251 1.67540 1.26333 1.18868 0.85363 0.90150 0.92985 1.21149 0.99157 1.05884 0.97462 1.20987 0.94631 0.95509 0.97443 1.20966 1.01361 1.03736 0.92153 1.21272 0.92474 0.93511 0.99854 1.19607 0.98889 1.04142 0.92099 1.17878 0.79940 0.86100 0.82225 1.90771 1.53823 1.17066 1.78610 1.48050 1.51100 1.10183 1.23517 1.21809 0.98979 0.84353 1.01298 1.19306 0.88798 0.96886 0.82368 1.21487 0.91143 1.40808 1.02689 0.92439 1.24926 0.99191 0.95075 0.94950 1.69948 1.33536 1.42314 1.07693 0.86468 0.84938 0.77903 0.78352 1.19737 1.20892 1.20886 1.74641 0.97560 1.15440 1.18677 1.85306 1.11316 1.35864 1.65167 0.88344 0.87789 0.87500 0.88584 0.89017 0.85156 0.85550 0.85415 0.84536 0.93651 0.90951 0.91956 0.94824 0.93710 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.18 2.35 8.51 -13.06 -0.11 2.24 16 3 N -0.47 -7.53 11.55 -9.87 -0.11 -7.64 16 4 C 0.17 2.82 7.85 -156.36 -1.23 1.59 16 5 C 0.15 2.24 5.36 36.00 0.19 2.43 16 6 O -0.28 -5.50 9.17 -27.56 -0.25 -5.76 16 7 C 0.17 2.98 6.68 -38.70 -0.26 2.72 16 8 C -0.22 -2.71 9.03 -39.48 -0.36 -3.07 16 9 C -0.07 -0.71 10.03 -39.53 -0.40 -1.10 16 10 C -0.16 -1.80 10.02 -39.63 -0.40 -2.20 16 11 C -0.05 -0.73 7.61 -39.20 -0.30 -1.03 16 12 C -0.14 -2.65 4.90 -104.84 -0.51 -3.16 16 13 C 0.55 13.10 6.94 -12.47 -0.09 13.02 16 14 O -0.53 -14.95 16.10 -3.61 -0.06 -15.01 16 15 N -0.60 -13.82 2.86 -184.19 -0.53 -14.35 16 16 C 0.08 1.38 9.09 59.85 0.54 1.92 16 17 C 0.25 6.80 5.21 -5.20 -0.03 6.77 16 18 C -0.52 -15.60 9.39 -34.44 -0.32 -15.92 16 19 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 22 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 N -0.36 -6.01 12.16 30.90 0.38 -5.63 16 27 O 0.09 1.27 11.31 18.12 0.20 1.47 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.12 7.66 -51.93 -0.40 0.72 16 32 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.71 6.57 -52.49 -0.34 1.37 16 37 H 0.05 0.65 7.56 -51.93 -0.39 0.26 16 38 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 39 H 0.06 0.95 5.68 -51.93 -0.29 0.66 16 40 H 0.03 0.92 8.07 -51.92 -0.42 0.50 16 41 H 0.04 1.39 7.36 -51.93 -0.38 1.01 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -40.00 365.51 -7.16 -47.17 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.04 Total: -2.42 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.98 Total: 5.82 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.47 Total: -54.30 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.11 Total: -19.29 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -40.00 -7.16 -47.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073492094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.873 kcal (2) G-P(sol) polarization free energy of solvation -40.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds