Wall clock time and date at job start Tue Mar 31 2020 16:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31124 * 126.55109 * 2 1 4 4 C 1.34501 * 105.61533 * 179.91830 * 3 2 1 5 5 C 1.50692 * 126.29059 * 180.12835 * 4 3 2 6 6 O 1.42903 * 109.47339 * 270.23745 * 5 4 3 7 7 C 1.35652 * 117.00078 * 180.02562 * 6 5 4 8 8 C 1.38704 * 120.15359 * 359.97438 * 7 6 5 9 9 C 1.38049 * 120.08574 * 179.97438 * 8 7 6 10 10 C 1.38553 * 120.39093 * 0.05068 * 9 8 7 11 11 C 1.37786 * 120.30075 * 359.97389 * 10 9 8 12 12 C 1.39710 * 119.90369 * 359.72567 * 11 10 9 13 13 C 1.47540 * 120.18877 * 180.29815 * 12 11 10 14 14 O 1.21584 * 119.99887 * 130.88428 * 13 12 11 15 15 N 1.34774 * 120.00080 * 310.88150 * 13 12 11 16 16 C 1.46507 * 119.99692 * 4.41683 * 15 13 12 17 17 C 1.46491 * 120.00178 * 184.41762 * 15 13 12 18 18 C 1.50703 * 109.47439 * 89.99993 * 17 15 13 19 19 H 1.07998 * 119.99420 * 0.02562 * 18 17 15 20 20 C 1.37867 * 120.00494 * 179.97438 * 18 17 15 21 21 N 1.31522 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00372 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46801 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47139 * 120.00126 * 22 20 18 25 25 H 1.48491 * 109.47518 * 240.00420 * 22 20 18 26 26 N 1.29954 * 107.42130 * 0.35025 * 4 3 2 27 27 O 1.21301 * 110.24661 * 359.77763 * 26 4 3 28 28 H 1.08993 * 109.47618 * 179.71252 * 1 2 3 29 29 H 1.09000 * 109.47110 * 299.71236 * 1 2 3 30 30 H 1.09004 * 109.46994 * 59.70853 * 1 2 3 31 31 H 1.09003 * 109.47463 * 30.23703 * 5 4 3 32 32 H 1.08996 * 109.47235 * 150.24126 * 5 4 3 33 33 H 1.08006 * 119.95594 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.80471 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.84818 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.04334 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.46820 * 93.02398 * 16 15 13 38 38 H 1.09000 * 109.46902 * 213.01897 * 16 15 13 39 39 H 1.08997 * 109.47141 * 333.01975 * 16 15 13 40 40 H 1.09009 * 109.47333 * 209.99902 * 17 15 13 41 41 H 1.09002 * 109.47332 * 329.99779 * 17 15 13 42 42 H 0.97000 * 120.00433 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5728 0.0018 5 6 4.8111 1.3885 0.0053 6 8 5.2113 1.6527 -1.3408 7 6 6.3423 2.3811 -1.5154 8 6 7.0555 2.8349 -0.4158 9 6 8.2066 3.5756 -0.5951 10 6 8.6576 3.8722 -1.8711 11 6 7.9613 3.4299 -2.9748 12 6 6.7983 2.6741 -2.8078 13 6 6.0515 2.1917 -3.9852 14 8 5.7166 1.0251 -4.0567 15 7 5.7404 3.0443 -4.9816 16 6 6.2264 4.4258 -4.9420 17 6 4.9164 2.5896 -6.1042 18 6 3.4619 2.8258 -5.7879 19 1 3.1798 3.2706 -4.8450 20 6 2.4917 2.4752 -6.7024 21 7 2.8353 1.9340 -7.8508 22 14 0.6889 2.7673 -6.3100 23 1 0.5689 3.3829 -4.9639 24 1 0.1028 3.6793 -7.3250 25 1 -0.0381 1.4727 -6.3292 26 7 3.4645 -0.7243 -0.0047 27 8 2.3028 -1.0736 -0.0059 28 1 -0.3634 -1.0276 -0.0052 29 1 -0.3633 0.5094 0.8925 30 1 -0.3633 0.5184 -0.8874 31 1 4.6351 2.3311 0.5237 32 1 5.5986 0.8344 0.5162 33 1 6.7098 2.6084 0.5821 34 1 8.7586 3.9263 0.2644 35 1 9.5590 4.4526 -2.0012 36 1 8.3169 3.6631 -3.9675 37 1 7.1685 4.4952 -5.4858 38 1 5.4905 5.0833 -5.4048 39 1 6.3819 4.7267 -3.9060 40 1 5.1876 3.1447 -7.0023 41 1 5.0839 1.5255 -6.2704 42 1 2.1526 1.6870 -8.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073492094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:21 Heat of formation + Delta-G solvation = 9.333523 kcal Electronic energy + Delta-G solvation = -28214.172028 eV Core-core repulsion = 24162.745983 eV Total energy + Delta-G solvation = -4051.426045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.85298 -41.72223 -40.20722 -38.51263 -37.09156 -36.63828 -34.82903 -34.79067 -32.50285 -31.28335 -30.04303 -29.74532 -29.14323 -27.51163 -25.68172 -25.02973 -23.90516 -23.37342 -22.41828 -20.77702 -19.59860 -18.97404 -18.80152 -18.74394 -18.08752 -17.54366 -17.21320 -16.87339 -16.33747 -16.22464 -15.86273 -15.63933 -15.44885 -15.06199 -14.51009 -14.29124 -14.27876 -14.16867 -13.89200 -13.68157 -13.66137 -13.50912 -13.16584 -13.07070 -12.90974 -12.83330 -12.69447 -12.61568 -12.38851 -12.29560 -12.13232 -12.11657 -11.76272 -11.13230 -10.75972 -10.70911 -9.97269 -9.52912 -9.28429 -8.28600 -6.44056 -0.06784 0.02046 0.37589 0.76365 1.28911 1.31767 1.44759 1.75247 1.80436 2.06611 2.27880 2.39155 2.61198 2.76562 2.81340 2.99720 3.56641 3.65205 3.80206 3.87094 4.04840 4.09024 4.25028 4.35342 4.38112 4.42392 4.49498 4.54393 4.57654 4.61929 4.80388 4.82231 4.88827 4.96279 5.04571 5.13233 5.19709 5.34496 5.46026 5.49068 5.75961 5.77618 5.99457 6.23744 6.61946 6.68716 6.94096 7.20372 7.38997 8.78981 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.006695 B = 0.005977 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4181.326212 B = 4683.500494 C = 8204.976800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.189 3.811 3 N -0.503 5.503 4 C 0.152 3.848 5 C 0.150 3.850 6 O -0.334 6.334 7 C 0.146 3.854 8 C -0.211 4.211 9 C -0.047 4.047 10 C -0.148 4.148 11 C -0.054 4.054 12 C -0.184 4.184 13 C 0.544 3.456 14 O -0.596 6.596 15 N -0.604 5.604 16 C 0.077 3.923 17 C 0.260 3.740 18 C -0.544 4.544 19 H 0.043 0.957 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.260 1.260 25 H -0.276 1.276 26 N -0.386 5.386 27 O 0.084 5.916 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.031 0.969 41 H -0.005 1.005 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 5.339 21.650 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 N -0.238 5.238 4 C -0.121 4.121 5 C 0.075 3.925 6 O -0.246 6.246 7 C 0.099 3.901 8 C -0.229 4.229 9 C -0.065 4.065 10 C -0.166 4.166 11 C -0.072 4.072 12 C -0.188 4.188 13 C 0.334 3.666 14 O -0.477 6.477 15 N -0.335 5.335 16 C -0.065 4.065 17 C 0.139 3.861 18 C -0.583 4.583 19 H 0.062 0.938 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.202 1.202 26 N -0.094 5.094 27 O 0.021 5.979 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.179 0.821 34 H 0.193 0.807 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.013 0.987 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.461 4.561 21.248 22.408 hybrid contribution -1.251 -0.492 -0.556 1.455 sum 4.210 4.069 20.693 21.505 Atomic orbital electron populations 1.20839 0.75917 1.08107 1.07045 1.29986 1.00712 0.79328 0.92994 1.71851 1.00265 1.30276 1.21363 1.25571 0.95544 0.88359 1.02581 1.20918 0.89291 0.99475 0.82844 1.86211 1.40771 1.68600 1.29032 1.19240 0.85757 0.91183 0.93882 1.21524 0.99116 1.05024 0.97233 1.21618 0.93192 0.92768 0.98944 1.21460 1.01693 1.02288 0.91149 1.21446 0.91105 0.92840 1.01805 1.19384 1.01027 1.08157 0.90229 1.18833 0.79288 0.85193 0.83294 1.90700 1.56937 1.20013 1.80087 1.48082 1.50453 1.12570 1.22388 1.22091 1.00038 0.80838 1.03484 1.18777 0.89144 0.93972 0.84180 1.21647 0.92577 1.41666 1.02400 0.93833 1.25886 1.04317 0.94311 0.94603 1.70058 1.35460 1.42518 1.08553 0.85372 0.78584 0.78352 0.78589 1.19592 1.18497 1.20181 1.74601 0.98781 1.15969 1.20028 1.85254 1.11007 1.36309 1.65298 0.85427 0.84923 0.87555 0.85997 0.86719 0.82150 0.80705 0.81127 0.83610 0.90178 0.91573 0.89468 0.95128 0.98703 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.51 71.24 0.75 -0.05 16 2 C 0.19 4.95 8.51 88.38 0.75 5.70 16 3 N -0.50 -16.59 11.55 -303.20 -3.50 -20.09 16 4 C 0.15 5.24 7.85 138.46 1.09 6.33 16 5 C 0.15 4.43 5.36 71.23 0.38 4.81 16 6 O -0.33 -13.59 9.17 -81.16 -0.74 -14.34 16 7 C 0.15 5.01 6.68 22.84 0.15 5.16 16 8 C -0.21 -4.58 9.03 22.34 0.20 -4.38 16 9 C -0.05 -0.73 10.03 22.30 0.22 -0.51 16 10 C -0.15 -2.50 10.02 22.24 0.22 -2.28 16 11 C -0.05 -1.39 7.61 22.52 0.17 -1.21 16 12 C -0.18 -6.91 4.90 -20.01 -0.10 -7.01 16 13 C 0.54 27.57 6.94 86.70 0.60 28.17 16 14 O -0.60 -37.05 16.10 4.53 0.07 -36.98 16 15 N -0.60 -29.57 2.86 -854.92 -2.44 -32.01 16 16 C 0.08 2.67 9.09 127.77 1.16 3.83 16 17 C 0.26 15.46 5.21 85.64 0.45 15.90 16 18 C -0.54 -34.21 9.39 25.60 0.24 -33.97 16 19 H 0.04 2.79 7.81 -2.91 -0.02 2.76 16 20 C 0.01 0.48 5.46 84.65 0.46 0.94 16 21 N -0.93 -58.57 13.29 21.44 0.28 -58.28 16 22 Si 0.97 47.15 29.54 68.60 2.03 49.17 16 23 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 N -0.39 -13.60 12.16 -60.31 -0.73 -14.33 16 27 O 0.08 2.52 11.31 74.89 0.85 3.37 16 28 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.12 2.75 7.66 -2.39 -0.02 2.74 16 32 H 0.12 2.66 7.66 -2.39 -0.02 2.64 16 33 H 0.16 2.41 6.30 -2.91 -0.02 2.39 16 34 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.15 3.35 6.57 -2.91 -0.02 3.33 16 37 H 0.08 2.19 7.56 -2.39 -0.02 2.17 16 38 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 39 H 0.09 2.58 5.68 -2.39 -0.01 2.56 16 40 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 41 H -0.01 -0.35 7.36 -2.39 -0.02 -0.37 16 42 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -98.19 365.51 3.62 -94.57 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 6.76 Total: 21.44 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.39 Total: -124.72 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: 0.17 Total: -47.94 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -98.19 3.62 -94.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073492094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.900 kcal (2) G-P(sol) polarization free energy of solvation -98.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds