Wall clock time and date at job start Tue Mar 31 2020 16:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 N 1.46496 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00582 * 275.33407 * 4 3 2 6 6 H 1.07999 * 119.99501 * 37.64675 * 5 4 3 7 7 C 1.38805 * 120.00088 * 217.65635 * 5 4 3 8 8 N 1.31619 * 120.00311 * 21.21927 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 201.21470 * 7 5 4 10 10 H 1.48495 * 109.47082 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46869 * 120.00240 * 9 7 5 12 12 H 1.48507 * 109.47132 * 239.99865 * 9 7 5 13 13 C 1.46504 * 119.99911 * 95.33455 * 4 3 2 14 14 C 1.50707 * 109.47094 * 270.00133 * 13 4 3 15 15 N 1.30970 * 126.43089 * 89.94700 * 14 13 4 16 16 C 1.35241 * 105.57722 * 180.02562 * 15 14 13 17 17 C 1.48343 * 126.41933 * 180.26537 * 16 15 14 18 18 C 1.39370 * 120.05877 * 359.70922 * 17 16 15 19 19 C 1.37942 * 120.02827 * 179.97438 * 18 17 16 20 20 C 1.38713 * 120.18680 * 359.97438 * 19 18 17 21 21 C 1.39414 * 120.01749 * 0.02562 * 20 19 18 22 22 C 1.38291 * 119.95037 * 359.73460 * 21 20 19 23 23 O 1.36534 * 108.61913 * 180.02562 * 21 20 19 24 24 C 1.43982 * 105.46663 * 342.68984 * 23 21 20 25 25 O 1.36472 * 131.38382 * 180.02562 * 20 19 18 26 26 N 1.30807 * 107.15871 * 359.97438 * 16 15 14 27 27 O 1.21284 * 110.09595 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47473 * 60.00079 * 1 2 3 29 29 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47725 * 299.99736 * 1 2 3 31 31 H 1.08992 * 109.47135 * 240.00048 * 2 1 3 32 32 H 1.09001 * 109.46733 * 119.99860 * 2 1 3 33 33 H 1.09006 * 109.47087 * 60.00157 * 3 2 1 34 34 H 1.09001 * 109.46940 * 300.00248 * 3 2 1 35 35 H 0.96996 * 120.00190 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47328 * 149.99911 * 13 4 3 37 37 H 1.09001 * 109.46781 * 29.99511 * 13 4 3 38 38 H 1.08004 * 119.98583 * 359.95622 * 18 17 16 39 39 H 1.07998 * 119.90561 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.03670 * 180.28164 * 22 21 20 41 41 H 1.08997 * 110.56666 * 268.61028 * 24 23 21 42 42 H 1.09003 * 110.56550 * 145.74791 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.3325 1.1816 6 1 3.8176 0.6859 1.9627 7 6 5.3603 2.0521 1.3748 8 7 5.6018 3.1234 0.6494 9 14 6.5937 1.5000 2.6646 10 1 6.0900 0.2771 3.3398 11 1 7.8944 1.2054 2.0115 12 1 6.7770 2.5792 3.6682 13 6 4.2379 1.5603 -1.2624 14 6 4.4893 0.1859 -1.8273 15 7 3.7063 -0.4748 -2.6431 16 6 4.3339 -1.6497 -2.8769 17 6 3.8498 -2.7487 -3.7479 18 6 2.6331 -2.6254 -4.4163 19 6 2.1838 -3.6475 -5.2264 20 6 2.9402 -4.8001 -5.3793 21 6 4.1580 -4.9286 -4.7130 22 6 4.6139 -3.9039 -3.9039 23 8 4.7010 -6.1413 -5.0270 24 6 3.6157 -6.9204 -5.5641 25 8 2.7218 -5.9324 -6.1091 26 7 5.4507 -1.6329 -2.1962 27 8 5.5533 -0.5876 -1.5898 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 6.4203 3.6261 0.7842 36 1 5.1903 2.0598 -1.0846 37 1 3.6490 2.1424 -1.9713 38 1 2.0415 -1.7293 -4.2997 39 1 1.2405 -3.5500 -5.7431 40 1 5.5592 -4.0000 -3.3907 41 1 3.1235 -7.4872 -4.7739 42 1 3.9744 -7.5869 -6.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102655599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:33 Heat of formation + Delta-G solvation = 51.371414 kcal Electronic energy + Delta-G solvation = -28002.735459 eV Core-core repulsion = 23953.132314 eV Total energy + Delta-G solvation = -4049.603145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.76628 -42.36870 -38.23531 -36.56833 -36.52689 -34.94398 -33.19238 -32.40827 -30.95468 -30.49849 -29.88468 -26.97566 -26.21381 -25.70664 -24.29409 -23.45511 -22.58984 -22.16541 -20.83123 -20.25559 -18.26909 -18.07789 -17.53656 -17.49156 -16.93695 -16.53317 -16.10794 -15.12343 -14.80468 -14.68191 -14.42370 -14.12058 -14.07537 -13.90519 -13.68984 -13.33421 -13.22939 -13.21556 -12.78791 -12.67706 -11.96889 -11.80644 -11.68423 -11.53685 -11.36801 -11.13901 -10.87969 -10.79644 -10.78696 -10.60777 -10.43704 -10.32873 -10.13170 -9.92030 -9.41669 -8.96089 -8.70379 -8.13014 -6.93022 -6.07942 -3.65645 0.61323 1.02638 1.94665 2.45140 2.81603 3.14165 3.28236 3.38228 3.41248 3.61138 3.68478 3.95357 4.23488 4.32951 4.37875 4.51382 4.61822 4.89693 5.03728 5.07337 5.13659 5.27394 5.32867 5.49324 5.65492 5.71580 5.84778 5.85972 5.96782 6.00158 6.15862 6.18935 6.23912 6.33260 6.41397 6.43099 6.56534 6.58736 6.63685 6.86797 6.88991 7.07883 7.12008 7.64738 8.23523 8.82393 8.87841 9.49900 10.05056 10.94692 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003126 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.082102 B = 8954.015807 C = 9926.397742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.148 3.852 4 N -0.560 5.560 5 C -0.273 4.273 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.286 1.286 13 C 0.216 3.784 14 C 0.208 3.792 15 N -0.499 5.499 16 C 0.191 3.809 17 C 0.009 3.991 18 C -0.065 4.065 19 C -0.102 4.102 20 C 0.040 3.960 21 C 0.028 3.972 22 C -0.070 4.070 23 O -0.307 6.307 24 C 0.213 3.787 25 O -0.308 6.308 26 N -0.394 5.394 27 O 0.080 5.920 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -12.319 -10.892 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C 0.022 3.978 4 N -0.279 5.279 5 C -0.403 4.403 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.084 3.916 14 C -0.015 4.015 15 N -0.234 5.234 16 C -0.079 4.079 17 C 0.007 3.993 18 C -0.085 4.085 19 C -0.120 4.120 20 C -0.005 4.005 21 C -0.016 4.016 22 C -0.091 4.091 23 O -0.224 6.224 24 C 0.101 3.899 25 O -0.224 6.224 26 N -0.104 5.104 27 O 0.023 5.977 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.102 0.898 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.962 -12.996 -11.239 18.187 hybrid contribution 0.758 -0.675 0.705 1.236 sum -5.205 -13.671 -10.534 18.026 Atomic orbital electron populations 1.21681 0.97030 1.00405 1.01052 1.22114 0.94197 1.00691 1.01784 1.21043 0.83680 0.93418 0.99628 1.43812 1.00169 1.82656 1.01241 1.19105 1.06368 1.21466 0.93327 0.91559 1.25228 1.00428 0.94124 0.98121 1.69931 1.25835 1.14237 1.41948 0.86276 0.81367 0.78554 0.80952 1.19851 1.20806 1.21294 1.20090 1.02649 0.81735 0.87087 1.31871 0.80674 0.99848 0.89063 1.71970 1.29395 1.03607 1.18454 1.23518 0.90342 0.94280 0.99713 1.16919 0.95033 0.90199 0.97149 1.21029 0.94667 0.98612 0.94222 1.19994 1.00164 0.90640 1.01230 1.19954 0.95320 0.90695 0.94558 1.19453 0.92823 0.89027 1.00347 1.19954 1.01390 0.90464 0.97272 1.87386 1.33309 1.22707 1.78959 1.25629 0.78524 0.89117 0.96615 1.87340 1.60834 1.19843 1.54429 1.74796 1.20286 1.04459 1.10820 1.85313 1.41138 1.19621 1.51670 0.93225 0.93903 0.93253 0.92164 0.92837 0.92848 0.93901 0.92843 0.85554 0.90081 0.82937 0.83998 0.83935 0.89819 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.67 6.23 -26.73 -0.17 -2.83 16 3 C 0.15 2.89 5.72 -4.04 -0.02 2.86 16 4 N -0.56 -12.70 2.42 -174.61 -0.42 -13.12 16 5 C -0.27 -6.88 9.45 -15.06 -0.14 -7.02 16 6 H 0.07 1.71 7.91 -52.49 -0.42 1.29 16 7 C 0.02 0.58 4.96 -17.43 -0.09 0.50 16 8 N -0.88 -22.79 11.46 55.49 0.64 -22.16 16 9 Si 0.90 20.42 29.60 -169.99 -5.03 15.39 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.22 4.58 5.95 -5.19 -0.03 4.55 16 14 C 0.21 4.29 7.93 -12.99 -0.10 4.19 16 15 N -0.50 -9.64 10.32 -9.87 -0.10 -9.74 16 16 C 0.19 3.58 7.80 -156.09 -1.22 2.37 16 17 C 0.01 0.14 5.88 -104.89 -0.62 -0.48 16 18 C -0.07 -0.85 9.69 -39.27 -0.38 -1.23 16 19 C -0.10 -1.16 10.04 -39.51 -0.40 -1.56 16 20 C 0.04 0.50 7.15 -38.97 -0.28 0.22 16 21 C 0.03 0.37 7.14 -39.12 -0.28 0.09 16 22 C -0.07 -1.03 9.70 -39.14 -0.38 -1.41 16 23 O -0.31 -3.77 11.41 -45.80 -0.52 -4.29 16 24 C 0.21 1.81 8.89 101.05 0.90 2.71 16 25 O -0.31 -3.46 11.40 -45.60 -0.52 -3.98 16 26 N -0.39 -8.02 11.85 30.98 0.37 -7.65 16 27 O 0.08 1.74 11.29 18.03 0.20 1.95 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.16 7.03 -51.93 -0.37 0.79 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.04 0.78 7.83 -51.93 -0.41 0.37 16 35 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.13 2.96 5.51 -51.93 -0.29 2.67 16 37 H 0.08 1.57 7.86 -51.93 -0.41 1.16 16 38 H 0.15 1.89 7.87 -52.48 -0.41 1.48 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.14 2.12 7.86 -52.49 -0.41 1.70 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -28.15 362.71 -7.98 -36.13 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.22 Total: 0.77 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.83 Total: 1.24 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.48 Total: -52.67 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.84 Total: -6.32 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.15 -7.98 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102655599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.505 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds