Wall clock time and date at job start Tue Mar 31 2020 16:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 N 1.46496 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00582 * 275.33407 * 4 3 2 6 6 H 1.07999 * 119.99501 * 37.64675 * 5 4 3 7 7 C 1.38805 * 120.00088 * 217.65635 * 5 4 3 8 8 N 1.31619 * 120.00311 * 21.21927 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 201.21470 * 7 5 4 10 10 H 1.48495 * 109.47082 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46869 * 120.00240 * 9 7 5 12 12 H 1.48507 * 109.47132 * 239.99865 * 9 7 5 13 13 C 1.46504 * 119.99911 * 95.33455 * 4 3 2 14 14 C 1.50707 * 109.47094 * 270.00133 * 13 4 3 15 15 N 1.30970 * 126.43089 * 89.94700 * 14 13 4 16 16 C 1.35241 * 105.57722 * 180.02562 * 15 14 13 17 17 C 1.48343 * 126.41933 * 180.26537 * 16 15 14 18 18 C 1.39370 * 120.05877 * 359.70922 * 17 16 15 19 19 C 1.37942 * 120.02827 * 179.97438 * 18 17 16 20 20 C 1.38713 * 120.18680 * 359.97438 * 19 18 17 21 21 C 1.39414 * 120.01749 * 0.02562 * 20 19 18 22 22 C 1.38291 * 119.95037 * 359.73460 * 21 20 19 23 23 O 1.36534 * 108.61913 * 180.02562 * 21 20 19 24 24 C 1.43982 * 105.46663 * 342.68984 * 23 21 20 25 25 O 1.36472 * 131.38382 * 180.02562 * 20 19 18 26 26 N 1.30807 * 107.15871 * 359.97438 * 16 15 14 27 27 O 1.21284 * 110.09595 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47473 * 60.00079 * 1 2 3 29 29 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47725 * 299.99736 * 1 2 3 31 31 H 1.08992 * 109.47135 * 240.00048 * 2 1 3 32 32 H 1.09001 * 109.46733 * 119.99860 * 2 1 3 33 33 H 1.09006 * 109.47087 * 60.00157 * 3 2 1 34 34 H 1.09001 * 109.46940 * 300.00248 * 3 2 1 35 35 H 0.96996 * 120.00190 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47328 * 149.99911 * 13 4 3 37 37 H 1.09001 * 109.46781 * 29.99511 * 13 4 3 38 38 H 1.08004 * 119.98583 * 359.95622 * 18 17 16 39 39 H 1.07998 * 119.90561 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.03670 * 180.28164 * 22 21 20 41 41 H 1.08997 * 110.56666 * 268.61028 * 24 23 21 42 42 H 1.09003 * 110.56550 * 145.74791 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.3325 1.1816 6 1 3.8176 0.6859 1.9627 7 6 5.3603 2.0521 1.3748 8 7 5.6018 3.1234 0.6494 9 14 6.5937 1.5000 2.6646 10 1 6.0900 0.2771 3.3398 11 1 7.8944 1.2054 2.0115 12 1 6.7770 2.5792 3.6682 13 6 4.2379 1.5603 -1.2624 14 6 4.4893 0.1859 -1.8273 15 7 3.7063 -0.4748 -2.6431 16 6 4.3339 -1.6497 -2.8769 17 6 3.8498 -2.7487 -3.7479 18 6 2.6331 -2.6254 -4.4163 19 6 2.1838 -3.6475 -5.2264 20 6 2.9402 -4.8001 -5.3793 21 6 4.1580 -4.9286 -4.7130 22 6 4.6139 -3.9039 -3.9039 23 8 4.7010 -6.1413 -5.0270 24 6 3.6157 -6.9204 -5.5641 25 8 2.7218 -5.9324 -6.1091 26 7 5.4507 -1.6329 -2.1962 27 8 5.5533 -0.5876 -1.5898 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 6.4203 3.6261 0.7842 36 1 5.1903 2.0598 -1.0846 37 1 3.6490 2.1424 -1.9713 38 1 2.0415 -1.7293 -4.2997 39 1 1.2405 -3.5500 -5.7431 40 1 5.5592 -4.0000 -3.3907 41 1 3.1235 -7.4872 -4.7739 42 1 3.9744 -7.5869 -6.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102655599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:32 Heat of formation + Delta-G solvation = 35.528401 kcal Electronic energy + Delta-G solvation = -28003.422464 eV Core-core repulsion = 23953.132314 eV Total energy + Delta-G solvation = -4050.290150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.33554 -43.26194 -39.28786 -38.25984 -37.41456 -36.44368 -34.74723 -33.99557 -32.46761 -31.67806 -31.03025 -28.62128 -27.38955 -27.00553 -25.53959 -24.76194 -23.91292 -23.51451 -22.21021 -21.83321 -19.47387 -19.13976 -19.02055 -18.57877 -18.41882 -17.75896 -17.27380 -16.88811 -16.10666 -15.93766 -15.76345 -15.60483 -15.29055 -15.03829 -14.93980 -14.89771 -14.21921 -14.12547 -14.09659 -13.89220 -13.44213 -13.35580 -13.15695 -12.98445 -12.71405 -12.59854 -12.47108 -12.41843 -12.25555 -12.05078 -11.99546 -11.87384 -11.83566 -11.36574 -10.90921 -10.59668 -10.04038 -9.16979 -8.76623 -7.98970 -5.59964 -0.53460 0.02208 0.40904 1.34554 1.45121 1.51382 1.58283 1.63307 2.08071 2.29309 2.46280 2.48549 2.67153 3.05809 3.22491 3.26144 3.59946 3.74303 3.89776 3.94950 4.05829 4.18298 4.20665 4.26902 4.39822 4.41791 4.58288 4.67316 4.69927 4.80790 4.85046 4.87778 4.96110 4.99554 5.08526 5.19091 5.20196 5.25631 5.26632 5.35850 5.43187 5.62109 5.65954 5.94124 6.36376 7.01060 7.23365 7.65286 8.17950 9.00869 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003126 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.082102 B = 8954.015807 C = 9926.397742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.147 3.853 4 N -0.574 5.574 5 C -0.281 4.281 6 H 0.054 0.946 7 C -0.012 4.012 8 N -0.899 5.899 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.282 1.282 13 C 0.223 3.777 14 C 0.204 3.796 15 N -0.491 5.491 16 C 0.203 3.797 17 C -0.021 4.021 18 C -0.056 4.056 19 C -0.091 4.091 20 C 0.048 3.952 21 C 0.020 3.980 22 C -0.079 4.079 23 O -0.323 6.323 24 C 0.203 3.797 25 O -0.312 6.312 26 N -0.412 5.412 27 O 0.052 5.948 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.261 0.739 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -13.944 -12.539 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.022 3.978 4 N -0.294 5.294 5 C -0.411 4.411 6 H 0.071 0.929 7 C -0.212 4.212 8 N -0.541 5.541 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.209 1.209 13 C 0.092 3.908 14 C -0.019 4.019 15 N -0.225 5.225 16 C -0.067 4.067 17 C -0.023 4.023 18 C -0.076 4.076 19 C -0.109 4.109 20 C 0.003 3.997 21 C -0.025 4.025 22 C -0.100 4.100 23 O -0.240 6.240 24 C 0.093 3.907 25 O -0.227 6.227 26 N -0.127 5.127 27 O 0.000 6.000 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.179 0.821 39 H 0.195 0.805 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.999 -14.614 -12.873 21.053 hybrid contribution 1.318 -0.363 1.064 1.732 sum -6.681 -14.977 -11.809 20.209 Atomic orbital electron populations 1.21611 0.93906 1.01612 1.02196 1.21962 0.96831 0.98984 0.99940 1.21150 0.82029 0.94541 1.00087 1.43953 1.01421 1.83063 1.00928 1.19138 1.06908 1.20959 0.94113 0.92872 1.25707 1.01491 0.94308 0.99688 1.69992 1.26127 1.14889 1.43076 0.85546 0.79519 0.78044 0.79360 1.20089 1.21244 1.20871 1.19897 1.01826 0.81981 0.87135 1.31659 0.80907 0.99736 0.89594 1.71958 1.28859 1.03731 1.17993 1.24084 0.89383 0.94541 0.98674 1.16991 0.96746 0.89912 0.98635 1.21142 0.93482 0.99346 0.93608 1.20282 1.00997 0.89383 1.00218 1.20163 0.94648 0.91259 0.93656 1.19471 0.93400 0.89310 1.00284 1.19840 1.01124 0.91001 0.97993 1.87371 1.34970 1.22528 1.79126 1.26228 0.77615 0.88330 0.98525 1.87340 1.61323 1.19752 1.54330 1.74793 1.21564 1.04221 1.12090 1.85282 1.41857 1.20272 1.52594 0.91701 0.92679 0.92486 0.93378 0.95250 0.93510 0.92145 0.92912 0.87766 0.88161 0.82127 0.80544 0.85156 0.87542 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.14 -4.87 6.23 30.59 0.19 -4.68 16 3 C 0.15 5.66 5.72 86.38 0.49 6.16 16 4 N -0.57 -26.38 2.42 -706.33 -1.71 -28.09 16 5 C -0.28 -14.49 9.45 84.03 0.79 -13.69 16 6 H 0.05 2.83 7.91 -2.91 -0.02 2.80 16 7 C -0.01 -0.62 4.96 84.86 0.42 -0.20 16 8 N -0.90 -47.52 11.46 21.65 0.25 -47.27 16 9 Si 0.95 42.79 29.60 68.60 2.03 44.82 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.22 9.60 5.95 85.63 0.51 10.11 16 14 C 0.20 8.58 7.93 88.36 0.70 9.28 16 15 N -0.49 -18.87 10.32 -302.42 -3.12 -21.99 16 16 C 0.20 7.67 7.80 137.25 1.07 8.74 16 17 C -0.02 -0.63 5.88 -20.04 -0.12 -0.75 16 18 C -0.06 -1.34 9.69 22.47 0.22 -1.12 16 19 C -0.09 -1.77 10.04 22.31 0.22 -1.54 16 20 C 0.05 1.07 7.15 22.67 0.16 1.24 16 21 C 0.02 0.51 7.14 22.57 0.16 0.67 16 22 C -0.08 -2.31 9.70 22.56 0.22 -2.10 16 23 O -0.32 -7.35 11.41 -76.45 -0.87 -8.22 16 24 C 0.20 2.79 8.89 113.37 1.01 3.80 16 25 O -0.31 -5.92 11.40 -75.72 -0.86 -6.78 16 26 N -0.41 -17.33 11.85 -59.06 -0.70 -18.03 16 27 O 0.05 2.35 11.29 74.60 0.84 3.19 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.81 7.03 -2.39 -0.02 1.79 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 34 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 35 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 36 H 0.10 5.04 5.51 -2.39 -0.01 5.03 16 37 H 0.10 3.85 7.86 -2.39 -0.02 3.83 16 38 H 0.16 3.58 7.87 -2.91 -0.02 3.56 16 39 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 4.03 7.86 -2.91 -0.02 4.01 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -61.78 362.71 3.68 -58.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.05 Total: 11.24 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.77 Total: 13.02 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.28 Total: -115.38 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.89 Total: -11.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -61.78 3.68 -58.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102655599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.633 kcal (2) G-P(sol) polarization free energy of solvation -61.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds