Wall clock time and date at job start Tue Mar 31 2020 16:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30525 * 126.34760 * 2 1 4 4 N 1.28595 * 109.67290 * 179.97438 * 3 2 1 5 5 C 1.30515 * 109.67156 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.34510 * 179.97438 * 5 4 3 7 7 O 1.45204 * 109.47029 * 90.02619 * 6 5 4 8 8 C 1.34229 * 116.99680 * 180.02562 * 7 6 5 9 9 O 1.20820 * 120.00264 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 N 1.35489 * 107.31126 * 0.23027 * 5 4 3 27 27 C 1.46500 * 126.98177 * 179.77456 * 26 5 4 28 28 H 1.09003 * 109.46707 * 89.98060 * 1 2 3 29 29 H 1.08994 * 109.47184 * 209.97610 * 1 2 3 30 30 H 1.09000 * 109.47157 * 329.98345 * 1 2 3 31 31 H 1.09009 * 109.46929 * 330.03107 * 6 5 4 32 32 H 1.08992 * 109.47452 * 210.03079 * 6 5 4 33 33 H 1.09002 * 109.47056 * 59.99464 * 10 8 7 34 34 H 1.09001 * 109.46884 * 299.99951 * 10 8 7 35 35 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 36 36 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 37 37 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 39 39 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 40 40 H 1.09001 * 109.47527 * 89.99672 * 27 26 5 41 41 H 1.08998 * 109.47176 * 209.99878 * 27 26 5 42 42 H 1.09001 * 109.47097 * 329.99701 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6823 0.0005 5 6 3.5807 -0.6211 0.0015 6 6 4.8396 -1.4495 0.0018 7 8 5.2439 -1.7151 1.3709 8 6 6.3558 -2.4462 1.5470 9 8 6.9711 -2.8503 0.5890 10 6 6.8366 -2.7628 2.9397 11 6 8.0938 -3.5900 2.8612 12 6 8.0110 -4.9702 2.8308 13 6 9.1609 -5.7308 2.7531 14 6 10.4021 -5.1087 2.7175 15 8 11.5346 -5.8540 2.6476 16 6 12.6976 -5.1878 2.5011 17 1 12.7084 -4.1081 2.5265 18 6 13.8798 -5.8887 2.3177 19 7 13.8667 -7.2039 2.2871 20 14 15.4910 -4.9657 2.1140 21 1 15.7461 -4.1424 3.3232 22 1 16.5991 -5.9379 1.9350 23 1 15.4087 -4.0832 0.9226 24 6 10.4822 -3.7228 2.7539 25 6 9.3283 -2.9675 2.8259 26 7 2.3101 -1.0913 -0.0037 27 6 1.8897 -2.4947 -0.0094 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5141 31 1 5.6325 -0.9059 -0.5122 32 1 4.6540 -2.3928 -0.5118 33 1 6.0667 -3.3219 3.4715 34 1 7.0445 -1.8346 3.4721 35 1 7.0456 -5.4534 2.8637 36 1 9.0954 -6.8085 2.7249 37 1 14.6937 -7.6943 2.1584 38 1 11.4460 -3.2361 2.7267 39 1 9.3900 -1.8896 2.8547 40 1 1.7826 -2.8461 1.0168 41 1 0.9344 -2.5858 -0.5263 42 1 2.6395 -3.0964 -0.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111674116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:41 Heat of formation + Delta-G solvation = -27.817004 kcal Electronic energy + Delta-G solvation = -26462.612958 eV Core-core repulsion = 22409.575945 eV Total energy + Delta-G solvation = -4053.037013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.30920 -41.66206 -40.68607 -38.55291 -37.54510 -36.22125 -34.43094 -33.94700 -33.00593 -31.80032 -30.43709 -28.60248 -28.30730 -27.50755 -26.87294 -23.65852 -23.25456 -22.37444 -21.96659 -21.58629 -19.86026 -18.87902 -18.84664 -18.22582 -17.67835 -17.50533 -17.24589 -16.42437 -16.33769 -15.94991 -15.61489 -15.46188 -15.37555 -15.07923 -14.59011 -14.45326 -14.37332 -14.09242 -14.03992 -13.77228 -13.60446 -13.37200 -13.31870 -12.97183 -12.90577 -12.71604 -12.51006 -12.35527 -12.28993 -12.14981 -11.99283 -11.63819 -11.44928 -11.22592 -11.19365 -10.79533 -10.28963 -9.78073 -8.95685 -8.48103 -6.16232 0.33026 0.60549 0.64923 1.18802 1.30372 1.34264 1.44495 1.50291 1.52875 2.00568 2.17219 2.81492 3.00874 3.17886 3.41681 3.50556 3.62085 3.68182 3.74889 3.91950 4.02514 4.13112 4.18267 4.24858 4.33538 4.42410 4.57270 4.58833 4.67238 4.67348 4.68337 4.79001 4.87907 4.92377 5.03883 5.10702 5.13449 5.24114 5.30414 5.54256 5.70656 5.72852 5.78692 6.01875 6.20514 6.71366 6.96490 7.54386 7.76571 8.74679 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.001871 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.112148 B =14964.274097 C =15359.685601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.190 3.810 3 N -0.344 5.344 4 N -0.312 5.312 5 C 0.160 3.840 6 C 0.158 3.842 7 O -0.354 6.354 8 C 0.469 3.531 9 O -0.527 6.527 10 C -0.047 4.047 11 C -0.159 4.159 12 C -0.049 4.049 13 C -0.206 4.206 14 C 0.116 3.884 15 O -0.231 6.231 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.246 4.246 25 C -0.057 4.057 26 N -0.460 5.460 27 C 0.056 3.944 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.273 0.727 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.599 9.934 -2.199 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 N -0.185 5.185 4 N -0.154 5.154 5 C -0.108 4.108 6 C 0.083 3.917 7 O -0.271 6.271 8 C 0.313 3.687 9 O -0.415 6.415 10 C -0.083 4.083 11 C -0.160 4.160 12 C -0.067 4.067 13 C -0.225 4.225 14 C 0.066 3.934 15 O -0.137 6.137 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.265 4.265 25 C -0.075 4.075 26 N -0.151 5.151 27 C -0.085 4.085 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -28.827 10.790 -2.524 30.883 hybrid contribution 1.059 -1.158 -0.433 1.628 sum -27.768 9.632 -2.957 29.540 Atomic orbital electron populations 1.20531 0.79796 1.06377 1.05798 1.25812 0.98904 0.82017 1.01047 1.74218 0.96451 1.26131 1.21725 1.74159 1.13523 1.09608 1.18148 1.24101 0.87421 0.91923 1.07386 1.20895 0.90075 0.98779 0.81997 1.86547 1.43148 1.66603 1.30769 1.24379 0.76926 0.73693 0.93704 1.90747 1.56069 1.50474 1.44183 1.20242 0.95686 1.03090 0.89322 1.19155 0.93612 0.93486 1.09734 1.20914 0.97298 0.93031 0.95473 1.20465 0.90237 1.00154 1.11649 1.19995 0.88025 0.91518 0.93893 1.83937 1.13084 1.35706 1.81012 1.21773 0.82705 0.92635 1.51999 0.88228 1.26580 1.02756 0.96804 0.95838 1.70173 1.29609 1.07748 1.48169 0.84664 0.74415 0.77448 0.79797 1.18028 1.19469 1.18453 1.21229 1.00007 0.93184 1.12122 1.20970 0.91216 0.99777 0.95495 1.46251 1.05264 1.10772 1.52835 1.22649 1.04643 0.74888 1.06305 0.87598 0.87206 0.88253 0.88366 0.86974 0.83586 0.84676 0.82759 0.86630 0.91805 0.86478 0.84363 0.87973 0.85545 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.06 71.24 0.72 0.43 16 2 C 0.19 3.02 8.03 137.98 1.11 4.12 16 3 N -0.34 -8.87 12.21 -50.15 -0.61 -9.48 16 4 N -0.31 -8.81 12.21 -50.16 -0.61 -9.42 16 5 C 0.16 3.37 7.67 137.98 1.06 4.43 16 6 C 0.16 3.03 5.82 71.24 0.41 3.44 16 7 O -0.35 -7.29 10.20 -51.41 -0.52 -7.81 16 8 C 0.47 10.85 7.95 71.24 0.57 11.41 16 9 O -0.53 -16.52 15.78 21.98 0.35 -16.17 16 10 C -0.05 -0.88 5.94 29.10 0.17 -0.71 16 11 C -0.16 -4.69 4.38 -19.83 -0.09 -4.77 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 13 C -0.21 -8.69 9.99 22.39 0.22 -8.47 16 14 C 0.12 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -14.09 9.76 -22.74 -0.22 -14.31 16 16 C -0.42 -24.57 9.49 67.92 0.64 -23.93 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 19 N -0.92 -56.86 13.67 21.61 0.30 -56.56 16 20 Si 1.02 43.50 29.55 68.60 2.03 45.52 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 C -0.25 -10.93 9.17 22.39 0.21 -10.73 16 25 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 26 N -0.46 -6.43 3.15 -527.24 -1.66 -8.09 16 27 C 0.06 0.17 10.71 127.77 1.37 1.54 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.11 -0.17 7.87 -2.39 -0.02 -0.19 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 2.08 8.13 -2.38 -0.02 2.06 16 32 H 0.11 1.60 7.20 -2.39 -0.02 1.59 16 33 H 0.15 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.14 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.13 -0.37 7.82 -2.39 -0.02 -0.39 16 42 H 0.10 0.22 7.19 -2.39 -0.02 0.20 16 Total: -1.00 -89.59 370.72 7.54 -82.05 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.06 Total: 15.40 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 7.44 Total: -21.12 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.59 Total: -83.55 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.40 Total: -38.30 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -89.59 7.54 -82.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111674116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.233 kcal (2) G-P(sol) polarization free energy of solvation -89.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds