Wall clock time and date at job start Tue Mar 31 2020 16:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47468 * 2 1 4 4 N 1.29911 * 124.85193 * 90.00101 * 3 2 1 5 5 C 1.36085 * 108.80331 * 179.97438 * 4 3 2 6 6 C 1.39529 * 133.72521 * 180.32725 * 5 4 3 7 7 C 1.38355 * 119.66180 * 180.20326 * 6 5 4 8 8 N 1.39865 * 119.86963 * 179.73135 * 7 6 5 9 9 C 1.34779 * 119.99996 * 326.32676 * 8 7 6 10 10 O 1.21380 * 119.99829 * 354.72456 * 9 8 7 11 11 C 1.49344 * 120.00014 * 174.72181 * 9 8 7 12 12 O 1.21368 * 119.99876 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00014 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99691 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.47185 * 35.00343 * 14 13 11 16 16 C 1.52995 * 109.46998 * 274.99782 * 14 13 11 17 17 C 1.50704 * 109.46856 * 155.00216 * 14 13 11 18 18 H 1.08001 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37870 * 119.99828 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00247 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99787 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47282 * 270.00285 * 21 19 17 23 23 H 1.48499 * 109.47116 * 30.00260 * 21 19 17 24 24 H 1.48500 * 109.46826 * 149.99934 * 21 19 17 25 25 C 1.39355 * 120.26021 * 359.45470 * 7 6 5 26 26 C 1.37793 * 120.40192 * 0.24915 * 25 7 6 27 27 C 1.38722 * 119.97685 * 0.03059 * 26 25 7 28 28 O 1.34219 * 124.85201 * 269.95820 * 3 2 1 29 29 H 1.09004 * 109.47302 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47303 * 300.00141 * 1 2 3 32 32 H 1.09002 * 109.47303 * 239.99859 * 2 1 3 33 33 H 1.08995 * 109.47244 * 120.00109 * 2 1 3 34 34 H 1.07997 * 120.16763 * 359.92470 * 6 5 4 35 35 H 0.97002 * 119.99945 * 146.32574 * 8 7 6 36 36 H 0.96993 * 119.99586 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.47277 * 300.00059 * 16 14 13 38 38 H 1.08997 * 109.47425 * 60.00510 * 16 14 13 39 39 H 1.09002 * 109.47088 * 180.02562 * 16 14 13 40 40 H 0.97000 * 119.99535 * 180.02562 * 20 19 17 41 41 H 1.08003 * 119.80245 * 180.28005 * 25 7 6 42 42 H 1.07995 * 120.01411 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2799 2.1206 1.0661 5 6 2.7164 3.3534 0.6899 6 6 3.1240 4.4880 1.3923 7 6 3.5178 5.6183 0.6982 8 7 3.9218 6.7599 1.3979 9 6 3.3483 7.0647 2.5789 10 8 2.4165 6.4040 2.9894 11 6 3.8593 8.2152 3.3824 12 8 4.7907 8.8760 2.9716 13 7 3.2860 8.5196 4.5636 14 6 3.7870 9.6486 5.3514 15 1 4.1137 10.4432 4.6806 16 6 4.9669 9.1880 6.2095 17 6 2.6881 10.1650 6.2441 18 1 1.7139 9.6991 6.2260 19 6 2.9264 11.2322 7.0838 20 7 4.1125 11.7999 7.1055 21 14 1.5640 11.8728 8.1899 22 1 0.7997 12.9260 7.4745 23 1 0.6522 10.7570 8.5489 24 1 2.1572 12.4444 9.4254 25 6 3.5189 5.6217 -0.6954 26 6 3.1235 4.5029 -1.3958 27 6 2.7206 3.3644 -0.7133 28 8 2.2888 2.1436 -1.1014 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.1279 4.4855 2.4722 35 1 4.6149 7.3323 1.0333 36 1 2.5419 7.9912 4.8919 37 1 4.6401 8.3934 6.8803 38 1 5.7617 8.8145 5.5639 39 1 5.3393 10.0279 6.7960 40 1 4.2802 12.5505 7.6966 41 1 3.8320 6.5066 -1.2297 42 1 3.1272 4.5124 -2.4757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122908855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:31 Heat of formation + Delta-G solvation = -32.413644 kcal Electronic energy + Delta-G solvation = -26893.338693 eV Core-core repulsion = 22840.102355 eV Total energy + Delta-G solvation = -4053.236338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.46616 -40.76194 -38.81321 -37.63169 -35.37622 -35.30106 -34.62414 -33.55165 -32.44044 -30.37767 -29.34061 -29.00356 -25.58628 -25.33301 -24.70504 -22.82199 -22.65591 -21.50868 -20.91638 -19.70593 -19.01956 -18.35525 -17.44985 -17.03053 -16.71574 -16.22348 -15.74763 -15.55207 -15.14943 -15.07537 -14.69597 -14.33152 -14.27674 -14.14285 -13.53552 -13.39175 -13.20201 -13.15008 -12.72437 -12.51100 -12.23369 -12.10498 -11.83642 -11.64788 -11.59814 -11.31591 -11.14264 -11.03923 -10.84991 -10.73518 -10.42456 -10.36734 -10.29514 -9.20943 -9.14097 -8.70956 -8.64738 -8.35014 -8.17240 -6.19551 -4.29215 0.42754 0.81951 1.77182 2.15642 2.20006 2.53620 3.22964 3.29658 3.32533 3.34813 3.45217 3.66564 4.01094 4.27230 4.31536 4.47684 4.62834 4.66879 4.73354 4.82695 4.99979 5.03316 5.08517 5.13684 5.28586 5.33359 5.46830 5.67358 5.76455 5.85647 5.89890 5.97491 6.03518 6.48472 6.69049 6.81320 6.96824 7.00146 7.17073 7.35385 7.38878 7.59251 7.73001 7.83509 8.02354 8.38664 8.56634 8.81448 9.37926 10.86455 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002191 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.241996 B =12774.200445 C =13608.379180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C 0.248 3.752 4 N -0.474 5.474 5 C 0.044 3.956 6 C -0.067 4.067 7 C 0.151 3.849 8 N -0.650 5.650 9 C 0.507 3.493 10 O -0.500 6.500 11 C 0.496 3.504 12 O -0.534 6.534 13 N -0.666 5.666 14 C 0.261 3.739 15 H 0.055 0.945 16 C -0.149 4.149 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.284 1.284 25 C -0.110 4.110 26 C -0.072 4.072 27 C -0.009 4.009 28 O -0.214 6.214 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.426 0.574 36 H 0.403 0.597 37 H 0.030 0.970 38 H 0.017 0.983 39 H 0.095 0.905 40 H 0.266 0.734 41 H 0.148 0.852 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -19.936 -17.664 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 C 0.037 3.963 4 N -0.204 5.204 5 C -0.068 4.068 6 C -0.088 4.088 7 C 0.055 3.945 8 N -0.298 5.298 9 C 0.290 3.710 10 O -0.373 6.373 11 C 0.274 3.726 12 O -0.413 6.413 13 N -0.315 5.315 14 C 0.161 3.839 15 H 0.073 0.927 16 C -0.207 4.207 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.197 1.197 24 H -0.210 1.210 25 C -0.130 4.130 26 C -0.092 4.092 27 C -0.060 4.060 28 O -0.106 6.106 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.167 0.833 35 H 0.265 0.735 36 H 0.237 0.763 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.166 0.834 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.454 -19.885 -16.831 26.167 hybrid contribution -0.609 0.681 -0.097 0.919 sum -3.063 -19.204 -16.928 25.782 Atomic orbital electron populations 1.21799 0.92619 1.03264 1.03304 1.20225 0.97237 0.83885 1.05635 1.26519 0.95124 0.96391 0.78311 1.70641 1.17829 1.03038 1.28874 1.19541 1.03136 0.93246 0.90909 1.20194 0.99139 0.88063 1.01396 1.17372 1.00153 0.86330 0.90663 1.43219 1.40570 1.24963 1.21000 1.21059 0.82477 0.85868 0.81584 1.90773 1.26149 1.51393 1.68969 1.19593 0.84730 0.84726 0.83545 1.90737 1.28409 1.51539 1.70618 1.46524 1.33974 1.32828 1.18182 1.19001 0.93166 0.82349 0.89418 0.92725 1.22102 0.97321 1.01718 0.99604 1.21186 0.97215 1.16232 1.22877 0.91722 1.24879 0.95987 0.96005 0.96740 1.69891 1.20906 1.22918 1.38297 0.86385 0.81486 0.79130 0.79773 1.20478 1.19715 1.20999 1.20790 1.01916 0.98560 0.91768 1.19577 1.00959 0.88479 1.00140 1.20290 1.04686 0.86511 0.94464 1.84468 1.68152 1.21870 1.36142 0.91999 0.90575 0.91450 0.88456 0.87135 0.83268 0.73501 0.76257 0.95053 0.96427 0.88669 0.92429 0.83412 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.03 -0.19 6.56 -27.89 -0.18 -0.37 16 3 C 0.25 2.69 7.49 -13.09 -0.10 2.59 16 4 N -0.47 -6.61 11.34 -8.71 -0.10 -6.71 16 5 C 0.04 0.62 7.23 -84.71 -0.61 0.01 16 6 C -0.07 -0.97 8.69 -39.06 -0.34 -1.31 16 7 C 0.15 1.91 6.27 -83.73 -0.52 1.39 16 8 N -0.65 -8.61 5.32 -10.30 -0.05 -8.67 16 9 C 0.51 8.46 7.61 -11.63 -0.09 8.37 16 10 O -0.50 -9.15 14.17 5.47 0.08 -9.08 16 11 C 0.50 9.71 7.85 -11.63 -0.09 9.62 16 12 O -0.53 -11.44 16.15 5.48 0.09 -11.35 16 13 N -0.67 -14.11 5.06 -55.40 -0.28 -14.39 16 14 C 0.26 6.50 2.56 -69.08 -0.18 6.32 16 15 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 16 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 17 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.25 11.32 55.43 0.63 -23.62 16 21 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.11 -1.06 9.94 -39.33 -0.39 -1.45 16 26 C -0.07 -0.69 10.05 -39.57 -0.40 -1.09 16 27 C -0.01 -0.11 7.43 -38.62 -0.29 -0.40 16 28 O -0.21 -2.47 10.77 3.45 0.04 -2.43 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.15 2.41 6.42 -52.49 -0.34 2.07 16 35 H 0.43 4.79 8.30 -40.82 -0.34 4.45 16 36 H 0.40 7.99 8.01 -40.82 -0.33 7.66 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -32.04 365.39 -7.05 -39.09 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.06 Total: 8.87 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -2.87 Total: 7.31 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.19 Total: -53.38 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.20 Total: -22.86 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.04 -7.05 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122908855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.676 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds