Wall clock time and date at job start Tue Mar 31 2020 16:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47468 * 2 1 4 4 N 1.29911 * 124.85193 * 90.00101 * 3 2 1 5 5 C 1.36085 * 108.80331 * 179.97438 * 4 3 2 6 6 C 1.39529 * 133.72521 * 180.32725 * 5 4 3 7 7 C 1.38355 * 119.66180 * 180.20326 * 6 5 4 8 8 N 1.39865 * 119.86963 * 179.73135 * 7 6 5 9 9 C 1.34779 * 119.99996 * 326.32676 * 8 7 6 10 10 O 1.21380 * 119.99829 * 354.72456 * 9 8 7 11 11 C 1.49344 * 120.00014 * 174.72181 * 9 8 7 12 12 O 1.21368 * 119.99876 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00014 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99691 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.47185 * 35.00343 * 14 13 11 16 16 C 1.52995 * 109.46998 * 274.99782 * 14 13 11 17 17 C 1.50704 * 109.46856 * 155.00216 * 14 13 11 18 18 H 1.08001 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37870 * 119.99828 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00247 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99787 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47282 * 270.00285 * 21 19 17 23 23 H 1.48499 * 109.47116 * 30.00260 * 21 19 17 24 24 H 1.48500 * 109.46826 * 149.99934 * 21 19 17 25 25 C 1.39355 * 120.26021 * 359.45470 * 7 6 5 26 26 C 1.37793 * 120.40192 * 0.24915 * 25 7 6 27 27 C 1.38722 * 119.97685 * 0.03059 * 26 25 7 28 28 O 1.34219 * 124.85201 * 269.95820 * 3 2 1 29 29 H 1.09004 * 109.47302 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47303 * 300.00141 * 1 2 3 32 32 H 1.09002 * 109.47303 * 239.99859 * 2 1 3 33 33 H 1.08995 * 109.47244 * 120.00109 * 2 1 3 34 34 H 1.07997 * 120.16763 * 359.92470 * 6 5 4 35 35 H 0.97002 * 119.99945 * 146.32574 * 8 7 6 36 36 H 0.96993 * 119.99586 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.47277 * 300.00059 * 16 14 13 38 38 H 1.08997 * 109.47425 * 60.00510 * 16 14 13 39 39 H 1.09002 * 109.47088 * 180.02562 * 16 14 13 40 40 H 0.97000 * 119.99535 * 180.02562 * 20 19 17 41 41 H 1.08003 * 119.80245 * 180.28005 * 25 7 6 42 42 H 1.07995 * 120.01411 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2799 2.1206 1.0661 5 6 2.7164 3.3534 0.6899 6 6 3.1240 4.4880 1.3923 7 6 3.5178 5.6183 0.6982 8 7 3.9218 6.7599 1.3979 9 6 3.3483 7.0647 2.5789 10 8 2.4165 6.4040 2.9894 11 6 3.8593 8.2152 3.3824 12 8 4.7907 8.8760 2.9716 13 7 3.2860 8.5196 4.5636 14 6 3.7870 9.6486 5.3514 15 1 4.1137 10.4432 4.6806 16 6 4.9669 9.1880 6.2095 17 6 2.6881 10.1650 6.2441 18 1 1.7139 9.6991 6.2260 19 6 2.9264 11.2322 7.0838 20 7 4.1125 11.7999 7.1055 21 14 1.5640 11.8728 8.1899 22 1 0.7997 12.9260 7.4745 23 1 0.6522 10.7570 8.5489 24 1 2.1572 12.4444 9.4254 25 6 3.5189 5.6217 -0.6954 26 6 3.1235 4.5029 -1.3958 27 6 2.7206 3.3644 -0.7133 28 8 2.2888 2.1436 -1.1014 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.1279 4.4855 2.4722 35 1 4.6149 7.3323 1.0333 36 1 2.5419 7.9912 4.8919 37 1 4.6401 8.3934 6.8803 38 1 5.7617 8.8145 5.5639 39 1 5.3393 10.0279 6.7960 40 1 4.2802 12.5505 7.6966 41 1 3.8320 6.5066 -1.2297 42 1 3.1272 4.5124 -2.4757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122908855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:30 Heat of formation + Delta-G solvation = -56.943140 kcal Electronic energy + Delta-G solvation = -26894.402372 eV Core-core repulsion = 22840.102355 eV Total energy + Delta-G solvation = -4054.300017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.34790 -42.10345 -40.23083 -38.84863 -37.05369 -36.16600 -35.84257 -34.40924 -34.18651 -31.40685 -31.03660 -30.04698 -27.39839 -26.65242 -25.65297 -23.99334 -23.55924 -22.52207 -22.27235 -21.31086 -20.33875 -19.52259 -18.52693 -18.07947 -17.95966 -17.77229 -17.14362 -16.97490 -16.77785 -15.98891 -15.88612 -15.44880 -15.41333 -15.02950 -14.89083 -14.72791 -14.45129 -14.09731 -13.88892 -13.76214 -13.61391 -13.13824 -13.04298 -12.92945 -12.82799 -12.69667 -12.65129 -12.45307 -12.30523 -12.14701 -12.08033 -11.69136 -11.44678 -11.18243 -10.74578 -10.62479 -10.01770 -9.60840 -9.35925 -8.21599 -6.38721 -0.42816 -0.25397 0.44000 1.17579 1.30519 1.41715 1.44799 1.45819 1.56361 2.04813 2.36646 2.48591 2.55317 2.83941 3.09241 3.36927 3.44044 3.78956 3.87245 3.99489 4.13846 4.19041 4.25966 4.41705 4.53587 4.68198 4.84838 4.86956 4.93272 4.94270 4.97832 4.99700 5.00606 5.05589 5.14797 5.27861 5.31303 5.39238 5.50483 5.58169 5.73215 5.91206 6.01911 6.47110 6.50563 6.62257 6.71874 7.02212 7.33223 8.84481 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002191 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.241996 B =12774.200445 C =13608.379180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C 0.258 3.742 4 N -0.519 5.519 5 C 0.015 3.985 6 C -0.094 4.094 7 C 0.141 3.859 8 N -0.629 5.629 9 C 0.517 3.483 10 O -0.519 6.519 11 C 0.498 3.502 12 O -0.553 6.553 13 N -0.671 5.671 14 C 0.268 3.732 15 H 0.019 0.981 16 C -0.137 4.137 17 C -0.553 4.553 18 H 0.069 0.931 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.265 1.265 24 H -0.281 1.281 25 C -0.096 4.096 26 C -0.057 4.057 27 C -0.019 4.019 28 O -0.213 6.213 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.437 0.563 36 H 0.409 0.591 37 H 0.038 0.962 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.268 0.732 41 H 0.188 0.812 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -21.133 -19.916 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C 0.046 3.954 4 N -0.249 5.249 5 C -0.096 4.096 6 C -0.115 4.115 7 C 0.046 3.954 8 N -0.278 5.278 9 C 0.299 3.701 10 O -0.393 6.393 11 C 0.278 3.722 12 O -0.432 6.432 13 N -0.320 5.320 14 C 0.166 3.834 15 H 0.036 0.964 16 C -0.196 4.196 17 C -0.591 4.591 18 H 0.087 0.913 19 C -0.181 4.181 20 N -0.549 5.549 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.190 1.190 24 H -0.206 1.206 25 C -0.116 4.116 26 C -0.076 4.076 27 C -0.070 4.070 28 O -0.105 6.105 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.278 0.722 36 H 0.245 0.755 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.206 0.794 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.246 -21.108 -19.123 28.667 hybrid contribution -0.332 0.951 0.493 1.121 sum -3.578 -20.157 -18.630 27.681 Atomic orbital electron populations 1.21794 0.91976 1.04690 1.02163 1.20578 0.97557 0.81217 1.07574 1.27519 0.92941 0.97414 0.77494 1.70623 1.19954 1.03691 1.30616 1.19735 1.04105 0.93467 0.92301 1.20080 1.01505 0.89606 1.00354 1.17560 1.00752 0.85178 0.91947 1.43002 1.40046 1.25081 1.19633 1.20327 0.82541 0.84799 0.82391 1.90783 1.27158 1.51714 1.69692 1.20002 0.84030 0.85074 0.83097 1.90718 1.29142 1.52420 1.70940 1.46291 1.34540 1.32334 1.18822 1.18643 0.93258 0.82615 0.88900 0.96363 1.21935 0.97234 1.01003 0.99406 1.21475 0.97694 1.16686 1.23233 0.91291 1.25716 0.98165 0.96155 0.98042 1.70011 1.22622 1.23290 1.38967 0.85352 0.78675 0.78541 0.77838 1.20147 1.18981 1.20602 1.21187 1.00370 0.99952 0.90087 1.20099 0.98529 0.86919 1.02019 1.20702 1.04933 0.87510 0.93817 1.84486 1.68094 1.21665 1.36279 0.92194 0.87845 0.93513 0.85436 0.86187 0.86044 0.72160 0.75486 0.94279 0.95961 0.90687 0.92270 0.79437 0.80042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C -0.03 -0.32 6.56 29.84 0.20 -0.12 16 3 C 0.26 5.38 7.49 88.39 0.66 6.04 16 4 N -0.52 -14.83 11.34 -296.30 -3.36 -18.19 16 5 C 0.02 0.44 7.23 39.30 0.28 0.73 16 6 C -0.09 -2.84 8.69 22.61 0.20 -2.64 16 7 C 0.14 3.44 6.27 38.16 0.24 3.68 16 8 N -0.63 -16.23 5.32 -304.84 -1.62 -17.85 16 9 C 0.52 17.42 7.61 87.24 0.66 18.09 16 10 O -0.52 -19.50 14.17 -3.34 -0.05 -19.55 16 11 C 0.50 19.82 7.85 87.24 0.68 20.50 16 12 O -0.55 -23.96 16.15 -3.30 -0.05 -24.01 16 13 N -0.67 -29.01 5.06 -447.54 -2.27 -31.28 16 14 C 0.27 13.67 2.56 44.25 0.11 13.78 16 15 H 0.02 1.07 7.58 -2.39 -0.02 1.05 16 16 C -0.14 -6.77 9.26 71.98 0.67 -6.10 16 17 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C 0.02 1.07 5.30 84.65 0.45 1.52 16 20 N -0.91 -50.80 11.32 21.44 0.24 -50.56 16 21 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.10 -1.55 9.94 22.43 0.22 -1.33 16 26 C -0.06 -0.90 10.05 22.28 0.22 -0.68 16 27 C -0.02 -0.45 7.43 22.89 0.17 -0.28 16 28 O -0.21 -4.57 10.77 -10.58 -0.11 -4.68 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 4.25 6.42 -2.91 -0.02 4.23 16 35 H 0.44 9.20 8.30 -92.71 -0.77 8.43 16 36 H 0.41 16.59 8.01 -92.71 -0.74 15.85 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 40 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -72.22 365.39 0.10 -72.12 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.42 Total: 26.50 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 5.71 Total: 23.50 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -7.01 Total: -117.88 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.21 Total: -48.24 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.22 0.10 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122908855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.177 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds