Wall clock time and date at job start Tue Mar 31 2020 16:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 C 1.53003 * 109.47099 * 240.00509 * 2 1 3 5 5 C 1.50697 * 109.47267 * 120.00024 * 2 1 3 6 6 C 1.38402 * 119.84411 * 354.48226 * 5 2 1 7 7 C 1.37912 * 120.15098 * 180.02562 * 6 5 2 8 8 C 1.39684 * 119.84376 * 0.27452 * 7 6 5 9 9 C 1.47698 * 120.15098 * 179.72615 * 8 7 6 10 10 O 1.21480 * 120.00274 * 48.94929 * 9 8 7 11 11 N 1.34777 * 120.00168 * 228.95564 * 9 8 7 12 12 C 1.33328 * 120.00349 * 173.27060 * 11 9 8 13 13 H 1.08003 * 119.99928 * 350.37358 * 12 11 9 14 14 C 1.46784 * 119.99958 * 170.37735 * 12 11 9 15 15 N 1.29311 * 120.00290 * 1.81040 * 14 12 11 16 16 Si 1.86805 * 119.99885 * 181.81522 * 14 12 11 17 17 H 1.48500 * 109.46959 * 89.99681 * 16 14 12 18 18 H 1.48494 * 109.47149 * 209.99748 * 16 14 12 19 19 H 1.48501 * 109.46816 * 329.99895 * 16 14 12 20 20 C 1.46504 * 119.99750 * 353.26363 * 11 9 8 21 21 C 1.47204 * 109.47266 * 263.51392 * 20 11 9 22 22 N 7.09008 * 145.04760 * 115.98102 * 2 1 3 23 23 C 1.39642 * 119.69917 * 359.44505 * 8 7 6 24 24 C 1.37962 * 119.84143 * 0.53622 * 23 8 7 25 25 N 1.48007 * 119.92293 * 179.74398 * 24 23 8 26 26 O 1.31705 * 120.00476 * 4.34268 * 25 24 23 27 27 O 1.31704 * 120.00261 * 184.34679 * 25 24 23 28 28 H 1.08994 * 109.47088 * 299.99585 * 1 2 3 29 29 H 1.09006 * 109.47107 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47326 * 154.29539 * 3 2 1 32 32 H 1.08998 * 109.47399 * 274.29998 * 3 2 1 33 33 H 1.09004 * 109.46690 * 34.29852 * 3 2 1 34 34 H 1.08999 * 109.47075 * 332.10782 * 4 2 1 35 35 H 1.08997 * 109.47654 * 92.10895 * 4 2 1 36 36 H 1.09003 * 109.46848 * 212.11010 * 4 2 1 37 37 H 1.08001 * 119.92645 * 359.97158 * 6 5 2 38 38 H 1.07997 * 120.07277 * 179.97438 * 7 6 5 39 39 H 0.96998 * 120.00033 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.46769 * 23.50863 * 20 11 9 41 41 H 1.08999 * 109.46858 * 143.51110 * 20 11 9 42 42 H 1.08000 * 120.08570 * 180.29638 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1354 -1.1343 2.1955 7 6 1.5882 -1.7845 3.3242 8 6 2.9562 -2.0099 3.4949 9 6 3.4491 -2.7002 4.7040 10 8 2.9346 -3.7410 5.0616 11 7 4.4698 -2.1755 5.4107 12 6 4.8271 -2.7231 6.5726 13 1 4.2080 -3.4843 7.0239 14 6 6.0619 -2.2913 7.2385 15 7 6.7850 -1.3552 6.7159 16 14 6.5889 -3.0942 8.8407 17 1 7.4516 -4.2665 8.5466 18 1 7.3474 -2.1145 9.6593 19 1 5.3867 -3.5398 9.5899 20 6 5.1867 -1.0035 4.9020 21 6 6.4028 -1.4401 4.1967 22 7 7.3412 -1.7794 3.6514 23 6 3.8550 -1.5847 2.5144 24 6 3.3881 -0.9358 1.3900 25 7 4.3397 -0.4794 0.3524 26 8 5.6203 -0.7675 0.4606 27 8 3.9060 0.2150 -0.6793 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.0341 1.4765 0.4457 32 1 2.0885 1.8108 -1.0247 33 1 1.3606 2.0680 0.5791 34 1 1.3048 -1.4601 -1.5679 35 1 2.1968 0.0032 -2.0485 36 1 2.9818 -1.2204 -1.0216 37 1 0.0785 -0.9547 2.0647 38 1 0.8872 -2.1144 4.0766 39 1 7.6008 -1.0696 7.1562 40 1 4.5441 -0.4554 4.2129 41 1 5.4621 -0.3564 5.7348 42 1 4.9135 -1.7600 2.6377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126604669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:23 Heat of formation + Delta-G solvation = 107.098610 kcal Electronic energy + Delta-G solvation = -29322.230797 eV Core-core repulsion = 25275.044164 eV Total energy + Delta-G solvation = -4047.186633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.10334 -39.35297 -37.94040 -36.62343 -36.01252 -34.49363 -34.06619 -32.47906 -31.81768 -30.68563 -27.79309 -27.48668 -27.43850 -26.41808 -25.49587 -23.45067 -22.12111 -20.33989 -19.64058 -18.36023 -18.07745 -17.95220 -16.61550 -16.43676 -16.30596 -16.01642 -15.45912 -15.07541 -14.65023 -14.59181 -14.33997 -14.07049 -13.79067 -13.30322 -13.22218 -12.73357 -12.64826 -12.39128 -12.27794 -12.20568 -11.89321 -11.79708 -11.78131 -11.45489 -11.39397 -11.18018 -11.12082 -11.05113 -10.75349 -10.72390 -10.60941 -10.48606 -10.34399 -9.69598 -9.58042 -9.47109 -9.09993 -8.76502 -8.64828 -6.86840 -4.06745 -0.50170 0.79366 1.22907 1.29905 2.83324 3.02820 3.06258 3.11724 3.50985 3.58327 3.84618 3.86038 4.09383 4.30185 4.42638 4.56908 4.64200 4.81866 4.87653 4.95034 4.97930 5.10685 5.14173 5.28171 5.44064 5.49750 5.54713 5.58857 5.63832 5.74345 5.78650 5.85326 5.88672 5.91316 6.04370 6.07252 6.19528 6.23129 6.25760 6.46795 6.54814 6.92189 7.00204 7.52104 8.04058 8.58736 8.68746 8.87955 9.54822 10.06773 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.003958 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.792752 B = 7072.554162 C = 8028.609784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.127 4.127 5 C -0.009 4.009 6 C -0.128 4.128 7 C -0.022 4.022 8 C -0.089 4.089 9 C 0.447 3.553 10 O -0.575 6.575 11 N -0.395 5.395 12 C -0.339 4.339 13 H 0.121 0.879 14 C 0.043 3.957 15 N -0.846 5.846 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.261 1.261 20 C 0.196 3.804 21 C 0.237 3.763 22 N -0.455 5.455 23 C -0.043 4.043 24 C -0.001 4.001 25 N -0.029 5.029 26 O -0.200 6.200 27 O -0.133 6.133 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.287 0.713 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 7.260 -7.681 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.183 4.183 4 C -0.185 4.185 5 C -0.011 4.011 6 C -0.146 4.146 7 C -0.042 4.042 8 C -0.094 4.094 9 C 0.238 3.762 10 O -0.461 6.461 11 N -0.109 5.109 12 C -0.468 4.468 13 H 0.139 0.861 14 C -0.169 4.169 15 N -0.481 5.481 16 Si 0.768 3.232 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.185 1.185 20 C 0.069 3.931 21 C -0.081 4.081 22 N -0.135 5.135 23 C -0.064 4.064 24 C -0.088 4.088 25 N 0.443 4.557 26 O -0.380 6.380 27 O -0.331 6.331 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.174 0.826 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.183 6.134 -7.721 14.910 hybrid contribution 0.632 -0.012 0.639 0.899 sum -10.550 6.123 -7.082 14.105 Atomic orbital electron populations 1.22056 0.93315 1.02255 1.02478 1.19706 0.96031 0.96025 0.91480 1.22054 1.00710 0.92657 1.02841 1.22318 1.00008 1.00097 0.96041 1.20030 0.89611 0.94645 0.96786 1.21194 1.00380 1.00052 0.93007 1.21715 0.94714 0.91346 0.96407 1.20302 0.93463 0.99193 0.96406 1.17311 0.86579 0.87381 0.84930 1.90633 1.61577 1.23196 1.70648 1.42518 1.26073 1.24001 1.18291 1.20789 1.06367 1.22745 0.96866 0.86110 1.26957 0.94447 0.95241 1.00228 1.68760 1.14273 1.25595 1.39429 0.85636 0.79230 0.79042 0.79314 1.19759 1.20331 1.18497 1.19469 0.84709 0.89997 0.98891 1.29129 0.94770 0.93556 0.90626 1.81041 1.11503 1.07591 1.13365 1.21548 1.02626 0.92172 0.90018 1.19949 0.87887 1.10034 0.90904 1.50308 1.03536 1.00050 1.01829 1.96354 0.93346 1.63287 1.85035 1.96186 1.81378 1.34522 1.20990 0.91930 0.91596 0.92048 0.92231 0.91154 0.93299 0.93889 0.90819 0.92184 0.82940 0.83240 0.90020 0.90578 0.82578 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 6.82 37.16 0.25 -0.84 16 2 C -0.03 -0.34 0.75 -155.66 -0.12 -0.46 16 3 C -0.13 -1.32 7.50 37.16 0.28 -1.04 16 4 C -0.13 -1.44 7.41 37.16 0.28 -1.16 16 5 C -0.01 -0.11 4.75 -104.52 -0.50 -0.61 16 6 C -0.13 -1.42 8.97 -39.64 -0.36 -1.77 16 7 C -0.02 -0.31 9.73 -39.16 -0.38 -0.69 16 8 C -0.09 -1.56 4.97 -104.97 -0.52 -2.08 16 9 C 0.45 9.84 7.16 -12.40 -0.09 9.75 16 10 O -0.57 -14.49 16.61 5.38 0.09 -14.40 16 11 N -0.39 -8.92 2.51 -117.49 -0.30 -9.22 16 12 C -0.34 -8.24 9.66 -13.45 -0.13 -8.37 16 13 H 0.12 3.08 7.28 -52.48 -0.38 2.69 16 14 C 0.04 0.97 5.52 -15.16 -0.08 0.89 16 15 N -0.85 -19.20 8.21 56.00 0.46 -18.74 16 16 Si 0.94 18.41 29.65 -169.99 -5.04 13.37 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 C 0.20 3.96 4.76 -6.82 -0.03 3.92 16 21 C 0.24 5.34 11.17 -20.72 -0.23 5.11 16 22 N -0.46 -11.04 18.55 42.20 0.78 -10.26 16 23 C -0.04 -0.76 7.01 -39.16 -0.27 -1.03 16 24 C 0.00 -0.02 6.02 -80.01 -0.48 -0.50 16 25 N -0.03 -0.50 3.98 33.93 0.14 -0.36 16 26 O -0.20 -4.06 19.15 -31.57 -0.60 -4.66 16 27 O -0.13 -2.03 10.47 -31.57 -0.33 -2.37 16 28 H 0.06 0.41 7.22 -51.93 -0.37 0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16 31 H 0.06 0.76 5.50 -51.93 -0.29 0.48 16 32 H 0.07 0.67 7.39 -51.93 -0.38 0.29 16 33 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 34 H 0.04 0.43 7.79 -51.93 -0.40 0.02 16 35 H 0.07 0.76 6.98 -51.93 -0.36 0.40 16 36 H 0.06 0.84 4.71 -52.90 -0.25 0.59 16 37 H 0.15 1.17 5.88 -52.49 -0.31 0.86 16 38 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.29 6.23 8.26 -40.82 -0.34 5.89 16 40 H 0.08 1.32 5.27 -51.93 -0.27 1.04 16 41 H 0.16 3.18 5.92 -51.93 -0.31 2.87 16 42 H 0.15 3.07 4.45 -52.49 -0.23 2.84 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -29.11 341.10 -6.40 -35.51 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.35 Total: 4.86 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.39 Total: 1.13 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.08 Total: -38.58 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.85 Total: -21.42 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.04 Total: 13.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.11 -6.40 -35.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126604669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.609 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds