Wall clock time and date at job start Tue Mar 31 2020 16:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 C 1.53003 * 109.47099 * 240.00509 * 2 1 3 5 5 C 1.50697 * 109.47267 * 120.00024 * 2 1 3 6 6 C 1.38402 * 119.84411 * 354.48226 * 5 2 1 7 7 C 1.37912 * 120.15098 * 180.02562 * 6 5 2 8 8 C 1.39684 * 119.84376 * 0.27452 * 7 6 5 9 9 C 1.47698 * 120.15098 * 179.72615 * 8 7 6 10 10 O 1.21480 * 120.00274 * 48.94929 * 9 8 7 11 11 N 1.34777 * 120.00168 * 228.95564 * 9 8 7 12 12 C 1.33328 * 120.00349 * 173.27060 * 11 9 8 13 13 H 1.08003 * 119.99928 * 350.37358 * 12 11 9 14 14 C 1.46784 * 119.99958 * 170.37735 * 12 11 9 15 15 N 1.29311 * 120.00290 * 1.81040 * 14 12 11 16 16 Si 1.86805 * 119.99885 * 181.81522 * 14 12 11 17 17 H 1.48500 * 109.46959 * 89.99681 * 16 14 12 18 18 H 1.48494 * 109.47149 * 209.99748 * 16 14 12 19 19 H 1.48501 * 109.46816 * 329.99895 * 16 14 12 20 20 C 1.46504 * 119.99750 * 353.26363 * 11 9 8 21 21 C 1.47204 * 109.47266 * 263.51392 * 20 11 9 22 22 N 7.09008 * 145.04760 * 115.98102 * 2 1 3 23 23 C 1.39642 * 119.69917 * 359.44505 * 8 7 6 24 24 C 1.37962 * 119.84143 * 0.53622 * 23 8 7 25 25 N 1.48007 * 119.92293 * 179.74398 * 24 23 8 26 26 O 1.31705 * 120.00476 * 4.34268 * 25 24 23 27 27 O 1.31704 * 120.00261 * 184.34679 * 25 24 23 28 28 H 1.08994 * 109.47088 * 299.99585 * 1 2 3 29 29 H 1.09006 * 109.47107 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47326 * 154.29539 * 3 2 1 32 32 H 1.08998 * 109.47399 * 274.29998 * 3 2 1 33 33 H 1.09004 * 109.46690 * 34.29852 * 3 2 1 34 34 H 1.08999 * 109.47075 * 332.10782 * 4 2 1 35 35 H 1.08997 * 109.47654 * 92.10895 * 4 2 1 36 36 H 1.09003 * 109.46848 * 212.11010 * 4 2 1 37 37 H 1.08001 * 119.92645 * 359.97158 * 6 5 2 38 38 H 1.07997 * 120.07277 * 179.97438 * 7 6 5 39 39 H 0.96998 * 120.00033 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.46769 * 23.50863 * 20 11 9 41 41 H 1.08999 * 109.46858 * 143.51110 * 20 11 9 42 42 H 1.08000 * 120.08570 * 180.29638 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1354 -1.1343 2.1955 7 6 1.5882 -1.7845 3.3242 8 6 2.9562 -2.0099 3.4949 9 6 3.4491 -2.7002 4.7040 10 8 2.9346 -3.7410 5.0616 11 7 4.4698 -2.1755 5.4107 12 6 4.8271 -2.7231 6.5726 13 1 4.2080 -3.4843 7.0239 14 6 6.0619 -2.2913 7.2385 15 7 6.7850 -1.3552 6.7159 16 14 6.5889 -3.0942 8.8407 17 1 7.4516 -4.2665 8.5466 18 1 7.3474 -2.1145 9.6593 19 1 5.3867 -3.5398 9.5899 20 6 5.1867 -1.0035 4.9020 21 6 6.4028 -1.4401 4.1967 22 7 7.3412 -1.7794 3.6514 23 6 3.8550 -1.5847 2.5144 24 6 3.3881 -0.9358 1.3900 25 7 4.3397 -0.4794 0.3524 26 8 5.6203 -0.7675 0.4606 27 8 3.9060 0.2150 -0.6793 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.0341 1.4765 0.4457 32 1 2.0885 1.8108 -1.0247 33 1 1.3606 2.0680 0.5791 34 1 1.3048 -1.4601 -1.5679 35 1 2.1968 0.0032 -2.0485 36 1 2.9818 -1.2204 -1.0216 37 1 0.0785 -0.9547 2.0647 38 1 0.8872 -2.1144 4.0766 39 1 7.6008 -1.0696 7.1562 40 1 4.5441 -0.4554 4.2129 41 1 5.4621 -0.3564 5.7348 42 1 4.9135 -1.7600 2.6377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126604669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:22 Heat of formation + Delta-G solvation = 90.930875 kcal Electronic energy + Delta-G solvation = -29322.931882 eV Core-core repulsion = 25275.044164 eV Total energy + Delta-G solvation = -4047.887718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33680 -40.93882 -39.25305 -37.88161 -37.66705 -36.33982 -35.36256 -34.21251 -33.03129 -31.94731 -29.43500 -28.30608 -28.21511 -27.73356 -27.09216 -24.82320 -23.30917 -21.84561 -20.63683 -20.15983 -19.54995 -19.20713 -18.31011 -18.01249 -17.63352 -17.17100 -16.71052 -16.62590 -16.02716 -15.83464 -15.49752 -15.32254 -15.04583 -14.77383 -14.67807 -14.10021 -14.01026 -13.75411 -13.63376 -13.38768 -13.28282 -13.17112 -13.04063 -12.84253 -12.54688 -12.49373 -12.29778 -12.25584 -12.21395 -12.11649 -11.83871 -11.68224 -11.48778 -11.34778 -10.98559 -10.79568 -10.59448 -10.43729 -10.14137 -8.61482 -5.93304 -1.78228 -0.43323 0.01840 0.03797 1.24929 1.40091 1.50534 1.61258 1.79009 2.00699 2.17916 2.24560 2.76935 2.80629 3.11978 3.18276 3.40670 3.54934 3.65795 3.76168 3.80495 4.04340 4.07154 4.17169 4.21519 4.44249 4.50230 4.64056 4.68375 4.78573 4.84545 4.88235 4.96420 4.98730 5.09796 5.12789 5.14817 5.18030 5.33100 5.37989 5.43939 5.52080 5.70286 5.73061 6.23851 6.76435 6.89645 7.12277 7.78382 8.30366 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.003958 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.792752 B = 7072.554162 C = 8028.609784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 C -0.129 4.129 4 C -0.133 4.133 5 C 0.009 3.991 6 C -0.100 4.100 7 C -0.007 4.007 8 C -0.108 4.108 9 C 0.448 3.552 10 O -0.613 6.613 11 N -0.407 5.407 12 C -0.380 4.380 13 H 0.099 0.901 14 C 0.017 3.983 15 N -0.858 5.858 16 Si 0.998 3.002 17 H -0.284 1.284 18 H -0.262 1.262 19 H -0.258 1.258 20 C 0.205 3.795 21 C 0.251 3.749 22 N -0.495 5.495 23 C -0.056 4.056 24 C -0.013 4.013 25 N -0.033 5.033 26 O -0.321 6.321 27 O -0.043 6.043 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.025 0.975 37 H 0.207 0.793 38 H 0.171 0.829 39 H 0.290 0.710 40 H 0.105 0.895 41 H 0.158 0.842 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 9.238 -9.053 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.187 4.187 4 C -0.191 4.191 5 C 0.007 3.993 6 C -0.117 4.117 7 C -0.026 4.026 8 C -0.113 4.113 9 C 0.240 3.760 10 O -0.501 6.501 11 N -0.121 5.121 12 C -0.507 4.507 13 H 0.117 0.883 14 C -0.193 4.193 15 N -0.492 5.492 16 Si 0.821 3.179 17 H -0.210 1.210 18 H -0.186 1.186 19 H -0.181 1.181 20 C 0.079 3.921 21 C -0.066 4.066 22 N -0.176 5.176 23 C -0.077 4.077 24 C -0.100 4.100 25 N 0.438 4.562 26 O -0.471 6.471 27 O -0.270 6.270 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.224 0.776 38 H 0.188 0.812 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.174 0.826 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.415 8.008 -8.952 19.542 hybrid contribution 1.635 -0.485 0.727 1.854 sum -13.781 7.523 -8.225 17.724 Atomic orbital electron populations 1.22099 0.89813 1.03629 1.04449 1.19915 0.98794 0.95358 0.89406 1.22098 0.99550 0.93014 1.03997 1.22351 0.98858 1.00908 0.96953 1.20612 0.87948 0.92767 0.97931 1.21730 1.02373 0.97086 0.90544 1.22028 0.92730 0.90139 0.97658 1.19949 0.95346 1.01206 0.94777 1.18009 0.85696 0.86865 0.85458 1.90585 1.62618 1.24904 1.72020 1.42609 1.26641 1.24705 1.18132 1.20681 1.07693 1.24114 0.98257 0.88297 1.27594 0.93813 0.95387 1.02462 1.68811 1.14347 1.25886 1.40189 0.84841 0.78677 0.77978 0.76439 1.21040 1.18634 1.18128 1.19557 0.84099 0.89326 0.99115 1.29643 0.94748 0.92544 0.89710 1.81011 1.13065 1.08813 1.14712 1.21207 1.01208 0.93797 0.91494 1.20095 0.88853 1.10789 0.90253 1.50386 1.03502 1.00292 1.02038 1.96395 0.94473 1.68995 1.87228 1.96105 1.80921 1.29873 1.20139 0.89973 0.89877 0.90959 0.95266 0.89710 0.90772 0.91586 0.89429 0.95680 0.77593 0.81180 0.89677 0.87755 0.82553 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 6.82 71.98 0.49 -0.60 16 2 C -0.03 -0.54 0.75 -52.93 -0.04 -0.58 16 3 C -0.13 -2.07 7.50 71.98 0.54 -1.53 16 4 C -0.13 -2.41 7.41 71.98 0.53 -1.88 16 5 C 0.01 0.20 4.75 -19.80 -0.09 0.11 16 6 C -0.10 -1.67 8.97 22.23 0.20 -1.47 16 7 C -0.01 -0.16 9.73 22.54 0.22 0.06 16 8 C -0.11 -3.79 4.97 -20.09 -0.10 -3.89 16 9 C 0.45 20.43 7.16 86.74 0.62 21.05 16 10 O -0.61 -32.04 16.61 -3.65 -0.06 -32.10 16 11 N -0.41 -19.30 2.51 -643.95 -1.62 -20.91 16 12 C -0.38 -19.36 9.66 86.70 0.84 -18.53 16 13 H 0.10 5.36 7.28 -2.91 -0.02 5.34 16 14 C 0.02 0.81 5.52 87.30 0.48 1.29 16 15 N -0.86 -40.21 8.21 23.26 0.19 -40.01 16 16 Si 1.00 38.58 29.65 68.60 2.03 40.62 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 20 C 0.21 8.71 4.76 84.57 0.40 9.11 16 21 C 0.25 12.07 11.17 89.43 1.00 13.07 16 22 N -0.50 -25.82 18.55 20.02 0.37 -25.45 16 23 C -0.06 -2.06 7.01 22.54 0.16 -1.90 16 24 C -0.01 -0.41 6.02 36.34 0.22 -0.19 16 25 N -0.03 -1.18 3.98 -46.56 -0.19 -1.36 16 26 O -0.32 -14.39 19.15 3.51 0.07 -14.33 16 27 O -0.04 -1.26 10.47 3.51 0.04 -1.22 16 28 H 0.08 0.37 7.22 -2.39 -0.02 0.35 16 29 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.46 7.74 -2.39 -0.02 0.44 16 31 H 0.03 0.65 5.50 -2.39 -0.01 0.63 16 32 H 0.08 1.15 7.39 -2.39 -0.02 1.13 16 33 H 0.07 0.87 7.88 -2.38 -0.02 0.85 16 34 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 35 H 0.09 1.38 6.98 -2.39 -0.02 1.36 16 36 H 0.02 0.64 4.71 -17.86 -0.08 0.55 16 37 H 0.21 1.40 5.88 -2.91 -0.02 1.39 16 38 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.29 12.88 8.26 -92.71 -0.77 12.11 16 40 H 0.10 3.78 5.27 -2.39 -0.01 3.76 16 41 H 0.16 6.63 5.92 -2.39 -0.01 6.62 16 42 H 0.12 5.28 4.45 -2.91 -0.01 5.27 16 Total: -1.00 -71.82 341.10 7.33 -64.49 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.03 Total: 16.15 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.47 Total: 14.13 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.24 Total: -87.74 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: 0.04 Total: -47.65 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.62 kcal Total: -71.82 7.33 -64.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126604669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.420 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds