Wall clock time and date at job start Tue Mar 31 2020 16:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46896 * 2 1 4 4 H 1.08999 * 109.47364 * 55.00029 * 3 2 1 5 5 C 1.50707 * 109.46960 * 175.00213 * 3 2 1 6 6 H 1.07994 * 120.00271 * 119.99919 * 5 3 2 7 7 C 1.37882 * 119.99462 * 300.00150 * 5 3 2 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99537 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47056 * 119.99475 * 9 7 5 12 12 H 1.48503 * 109.47024 * 239.99710 * 9 7 5 13 13 N 1.46500 * 109.47362 * 294.99532 * 3 2 1 14 14 C 1.34785 * 119.99625 * 85.00021 * 13 3 2 15 15 O 1.21362 * 119.99810 * 0.02562 * 14 13 3 16 16 C 1.49330 * 119.99764 * 179.97438 * 14 13 3 17 17 O 1.21376 * 120.00243 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99350 * 180.02562 * 16 14 13 19 19 C 1.39752 * 119.99686 * 185.27923 * 18 16 14 20 20 C 1.39376 * 119.84932 * 213.44015 * 19 18 16 21 21 C 1.36559 * 120.48810 * 179.72169 * 20 19 18 22 22 C 1.39643 * 119.94297 * 0.25301 * 21 20 19 23 23 N 1.36088 * 133.72147 * 179.97438 * 22 21 20 24 24 C 1.29889 * 108.82098 * 180.02562 * 23 22 21 25 25 C 1.50692 * 124.85848 * 179.97438 * 24 23 22 26 26 O 1.34278 * 110.29371 * 0.02562 * 24 23 22 27 27 C 1.35114 * 108.15040 * 359.97438 * 26 24 23 28 28 C 1.38570 * 133.95264 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47082 * 300.00261 * 1 2 3 31 31 H 1.09003 * 109.47305 * 60.00110 * 1 2 3 32 32 H 1.09003 * 109.47067 * 240.00115 * 2 1 3 33 33 H 1.08990 * 109.47168 * 119.99906 * 2 1 3 34 34 H 0.97003 * 119.99691 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00645 * 265.00238 * 13 3 2 36 36 H 0.96998 * 120.01046 * 5.27457 * 18 16 14 37 37 H 1.07998 * 119.75020 * 359.97438 * 20 19 18 38 38 H 1.07994 * 120.02412 * 180.27400 * 21 20 19 39 39 H 1.09004 * 109.47328 * 270.00185 * 25 24 23 40 40 H 1.09002 * 109.47156 * 29.99617 * 25 24 23 41 41 H 1.08997 * 109.47637 * 150.00129 * 25 24 23 42 42 H 1.08003 * 120.16617 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8812 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3990 1.6167 2.6102 12 1 6.4971 -0.5175 1.4629 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3398 2.6326 -0.4335 16 6 0.0403 3.3326 -2.6428 17 8 0.8155 3.3647 -3.5762 18 7 -1.1768 3.8998 -2.7577 19 6 -1.5888 4.4274 -3.9845 20 6 -2.4141 5.5502 -4.0148 21 6 -2.8198 6.0799 -5.2062 22 6 -2.4114 5.4924 -6.4054 23 7 -2.6397 5.7750 -7.7169 24 6 -2.0157 4.9017 -8.4485 25 6 -2.0240 4.8770 -9.9552 26 8 -1.3632 4.0233 -7.6703 27 6 -1.5849 4.3581 -6.3802 28 6 -1.1793 3.8283 -5.1657 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 -1.7670 3.9419 -1.9891 37 1 -2.7316 6.0070 -3.0891 38 1 -3.4557 6.9527 -5.2210 39 1 -2.8563 4.2657 -10.3040 40 1 -2.1352 5.8928 -10.3346 41 1 -1.0865 4.4547 -10.3168 42 1 -0.5436 2.9556 -5.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128383848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:31 Heat of formation + Delta-G solvation = -29.086519 kcal Electronic energy + Delta-G solvation = -27353.107653 eV Core-core repulsion = 23300.015589 eV Total energy + Delta-G solvation = -4053.092063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45083 -40.84148 -38.95552 -37.74196 -35.59713 -35.17535 -34.32889 -32.47813 -31.57441 -31.07000 -30.75297 -28.08084 -27.24646 -24.77693 -23.65410 -23.12912 -22.23392 -21.67854 -20.36851 -19.58267 -19.10538 -18.24084 -17.44024 -17.06108 -16.85485 -16.29579 -15.75064 -15.63125 -15.17405 -14.66579 -14.45218 -14.34528 -14.11847 -13.81944 -13.63430 -13.56553 -13.38650 -12.83006 -12.78875 -12.76523 -12.16910 -12.04062 -11.69425 -11.63960 -11.42903 -11.32495 -11.03067 -10.92316 -10.73728 -10.40427 -10.31534 -10.21471 -9.75435 -9.21903 -9.17863 -9.05943 -8.61737 -8.17560 -8.09609 -6.21863 -4.31595 0.37562 0.94948 1.64000 2.13321 2.19551 2.60545 3.20020 3.28475 3.31892 3.34430 3.51829 3.62838 3.97228 4.28821 4.29340 4.65591 4.66830 4.76223 4.93075 4.99070 4.99337 5.10571 5.15517 5.23855 5.52047 5.69538 5.80889 5.81960 6.00539 6.12028 6.26489 6.30966 6.43501 6.49836 6.87055 6.90592 7.04967 7.08613 7.21574 7.36829 7.42083 7.58220 7.70470 7.78398 8.03008 8.35796 8.54954 8.79791 9.35455 10.83549 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002356 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.771579 B =11879.254070 C =12422.711147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.527 6.527 16 C 0.507 3.493 17 O -0.501 6.501 18 N -0.648 5.648 19 C 0.179 3.821 20 C -0.135 4.135 21 C -0.040 4.040 22 C 0.003 3.997 23 N -0.478 5.478 24 C 0.239 3.761 25 C -0.063 4.063 26 O -0.212 6.212 27 C 0.033 3.967 28 C -0.101 4.101 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.428 0.572 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 8.169 -17.432 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.274 3.726 15 O -0.406 6.406 16 C 0.290 3.710 17 O -0.373 6.373 18 N -0.296 5.296 19 C 0.083 3.917 20 C -0.156 4.156 21 C -0.060 4.060 22 C -0.109 4.109 23 N -0.208 5.208 24 C 0.028 3.972 25 C -0.120 4.120 26 O -0.103 6.103 27 C -0.018 4.018 28 C -0.123 4.123 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.267 0.733 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.692 8.478 -17.377 23.129 hybrid contribution 1.420 -0.588 0.390 1.585 sum -11.272 7.890 -16.988 21.861 Atomic orbital electron populations 1.21858 0.98278 0.98485 1.01010 1.21971 0.92665 0.99349 1.02842 1.19051 0.94878 0.89419 0.79992 0.92646 1.21237 0.90252 1.39437 1.06605 0.91697 1.24874 0.98877 0.94572 0.95227 1.69888 1.35210 1.37417 1.09334 0.86352 0.84473 0.77867 0.78221 1.19620 1.20802 1.20781 1.46489 1.13249 1.52404 1.19296 1.19498 0.84626 0.81643 0.86875 1.90755 1.51075 1.59547 1.39183 1.21141 0.81296 0.78624 0.89971 1.90763 1.50399 1.55628 1.40542 1.43239 1.17584 1.57339 1.11420 1.17257 0.96639 0.93045 0.84766 1.20597 1.00960 0.95177 0.98914 1.19790 0.98801 0.99347 0.88046 1.19848 1.01751 0.97102 0.92150 1.70569 1.23401 1.25669 1.01152 1.26440 0.89765 0.84508 0.96498 1.20398 1.05001 1.05691 0.80916 1.84502 1.61096 1.49626 1.15116 1.19881 1.00625 0.97551 0.83752 1.19660 1.04029 1.02213 0.86359 0.95421 0.92890 0.94671 0.94630 0.87779 0.92456 0.76343 0.73291 0.83746 0.84062 0.88405 0.87716 0.88851 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.26 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.76 8.73 -34.43 -0.30 -14.06 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.67 -13.58 5.01 -55.40 -0.28 -13.85 16 14 C 0.50 9.27 6.45 -11.64 -0.08 9.20 16 15 O -0.53 -10.64 13.62 5.49 0.07 -10.56 16 16 C 0.51 8.14 7.61 -11.64 -0.09 8.05 16 17 O -0.50 -8.82 14.17 5.47 0.08 -8.75 16 18 N -0.65 -8.30 5.32 -10.26 -0.05 -8.35 16 19 C 0.18 2.21 6.27 -83.68 -0.52 1.69 16 20 C -0.14 -1.34 9.88 -39.76 -0.39 -1.73 16 21 C -0.04 -0.42 10.04 -39.66 -0.40 -0.82 16 22 C 0.00 0.04 7.24 -84.65 -0.61 -0.57 16 23 N -0.48 -5.97 11.34 -8.66 -0.10 -6.07 16 24 C 0.24 2.54 8.24 -13.10 -0.11 2.43 16 25 C -0.06 -0.31 10.51 36.00 0.38 0.07 16 26 O -0.21 -2.74 10.78 3.49 0.04 -2.70 16 27 C 0.03 0.45 7.43 -38.66 -0.29 0.17 16 28 C -0.10 -1.40 8.66 -39.31 -0.34 -1.74 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 31 H 0.03 0.70 5.65 -51.93 -0.29 0.41 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.40 7.73 8.01 -40.82 -0.33 7.40 16 36 H 0.43 4.64 8.29 -40.82 -0.34 4.30 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.15 2.21 6.43 -52.48 -0.34 1.87 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -30.98 357.56 -6.98 -37.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.91 Total: 9.97 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.83 Total: 4.90 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.20 Total: -51.39 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.19 Total: -22.00 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.98 -6.98 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128383848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.874 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds