Wall clock time and date at job start Tue Mar 31 2020 16:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46896 * 2 1 4 4 H 1.08999 * 109.47364 * 55.00029 * 3 2 1 5 5 C 1.50707 * 109.46960 * 175.00213 * 3 2 1 6 6 H 1.07994 * 120.00271 * 119.99919 * 5 3 2 7 7 C 1.37882 * 119.99462 * 300.00150 * 5 3 2 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99537 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47056 * 119.99475 * 9 7 5 12 12 H 1.48503 * 109.47024 * 239.99710 * 9 7 5 13 13 N 1.46500 * 109.47362 * 294.99532 * 3 2 1 14 14 C 1.34785 * 119.99625 * 85.00021 * 13 3 2 15 15 O 1.21362 * 119.99810 * 0.02562 * 14 13 3 16 16 C 1.49330 * 119.99764 * 179.97438 * 14 13 3 17 17 O 1.21376 * 120.00243 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99350 * 180.02562 * 16 14 13 19 19 C 1.39752 * 119.99686 * 185.27923 * 18 16 14 20 20 C 1.39376 * 119.84932 * 213.44015 * 19 18 16 21 21 C 1.36559 * 120.48810 * 179.72169 * 20 19 18 22 22 C 1.39643 * 119.94297 * 0.25301 * 21 20 19 23 23 N 1.36088 * 133.72147 * 179.97438 * 22 21 20 24 24 C 1.29889 * 108.82098 * 180.02562 * 23 22 21 25 25 C 1.50692 * 124.85848 * 179.97438 * 24 23 22 26 26 O 1.34278 * 110.29371 * 0.02562 * 24 23 22 27 27 C 1.35114 * 108.15040 * 359.97438 * 26 24 23 28 28 C 1.38570 * 133.95264 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47082 * 300.00261 * 1 2 3 31 31 H 1.09003 * 109.47305 * 60.00110 * 1 2 3 32 32 H 1.09003 * 109.47067 * 240.00115 * 2 1 3 33 33 H 1.08990 * 109.47168 * 119.99906 * 2 1 3 34 34 H 0.97003 * 119.99691 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00645 * 265.00238 * 13 3 2 36 36 H 0.96998 * 120.01046 * 5.27457 * 18 16 14 37 37 H 1.07998 * 119.75020 * 359.97438 * 20 19 18 38 38 H 1.07994 * 120.02412 * 180.27400 * 21 20 19 39 39 H 1.09004 * 109.47328 * 270.00185 * 25 24 23 40 40 H 1.09002 * 109.47156 * 29.99617 * 25 24 23 41 41 H 1.08997 * 109.47637 * 150.00129 * 25 24 23 42 42 H 1.08003 * 120.16617 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8812 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3990 1.6167 2.6102 12 1 6.4971 -0.5175 1.4629 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3398 2.6326 -0.4335 16 6 0.0403 3.3326 -2.6428 17 8 0.8155 3.3647 -3.5762 18 7 -1.1768 3.8998 -2.7577 19 6 -1.5888 4.4274 -3.9845 20 6 -2.4141 5.5502 -4.0148 21 6 -2.8198 6.0799 -5.2062 22 6 -2.4114 5.4924 -6.4054 23 7 -2.6397 5.7750 -7.7169 24 6 -2.0157 4.9017 -8.4485 25 6 -2.0240 4.8770 -9.9552 26 8 -1.3632 4.0233 -7.6703 27 6 -1.5849 4.3581 -6.3802 28 6 -1.1793 3.8283 -5.1657 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 -1.7670 3.9419 -1.9891 37 1 -2.7316 6.0070 -3.0891 38 1 -3.4557 6.9527 -5.2210 39 1 -2.8563 4.2657 -10.3040 40 1 -2.1352 5.8928 -10.3346 41 1 -1.0865 4.4547 -10.3168 42 1 -0.5436 2.9556 -5.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128383848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:30 Heat of formation + Delta-G solvation = -52.503439 kcal Electronic energy + Delta-G solvation = -27354.123086 eV Core-core repulsion = 23300.015589 eV Total energy + Delta-G solvation = -4054.107497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.33936 -42.13691 -40.33872 -38.90454 -37.22260 -36.28133 -35.37134 -34.32087 -32.83858 -32.29916 -31.63643 -29.32709 -28.73789 -26.19280 -24.82553 -24.54141 -23.37404 -22.59439 -21.82680 -21.23822 -20.38052 -19.37723 -18.51300 -18.16150 -17.97225 -17.87387 -17.21266 -17.05166 -16.72363 -16.01008 -15.70190 -15.61926 -15.11697 -14.98835 -14.78436 -14.63180 -14.20228 -14.15367 -13.87969 -13.67424 -13.49812 -13.28047 -13.22474 -13.05023 -12.92298 -12.74248 -12.66709 -12.54262 -12.16477 -12.11853 -11.68351 -11.60767 -11.24440 -11.10410 -10.68706 -10.55670 -9.98526 -9.86206 -9.12486 -8.19789 -6.36373 -0.57075 0.04239 0.34486 1.09961 1.29648 1.43212 1.45207 1.50482 1.57417 2.10067 2.38291 2.51506 2.68407 2.82295 3.10338 3.39444 3.45768 3.84612 3.88888 3.93671 4.24173 4.45580 4.48340 4.54490 4.60091 4.62649 4.70651 4.74962 4.87544 4.97465 4.99295 5.01527 5.12159 5.21571 5.26891 5.34099 5.38194 5.51580 5.55786 5.66009 5.77558 5.91548 6.10664 6.46940 6.50427 6.65675 6.74014 7.07373 7.35399 8.85506 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002356 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.771579 B =11879.254070 C =12422.711147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.018 0.982 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.498 3.502 15 O -0.541 6.541 16 C 0.517 3.483 17 O -0.518 6.518 18 N -0.628 5.628 19 C 0.165 3.835 20 C -0.117 4.117 21 C -0.039 4.039 22 C -0.007 4.007 23 N -0.502 5.502 24 C 0.245 3.755 25 C -0.063 4.063 26 O -0.227 6.227 27 C 0.004 3.996 28 C -0.116 4.116 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.439 0.561 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 9.346 -18.880 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.036 0.964 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.420 6.420 16 C 0.299 3.701 17 O -0.393 6.393 18 N -0.277 5.277 19 C 0.070 3.930 20 C -0.138 4.138 21 C -0.058 4.058 22 C -0.118 4.118 23 N -0.233 5.233 24 C 0.034 3.966 25 C -0.119 4.119 26 O -0.120 6.120 27 C -0.046 4.046 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.280 0.720 37 H 0.199 0.801 38 H 0.189 0.811 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.539 9.680 -18.846 25.144 hybrid contribution 1.573 -0.906 0.736 1.958 sum -11.966 8.774 -18.111 23.413 Atomic orbital electron populations 1.21712 0.96462 0.99716 1.00495 1.21828 0.94238 0.98553 1.01692 1.18661 0.94073 0.89600 0.80283 0.96412 1.21541 0.91260 1.39435 1.06837 0.91477 1.25662 1.03071 0.94221 0.94934 1.70009 1.36879 1.37987 1.09773 0.85364 0.79371 0.77891 0.78132 1.19036 1.20706 1.20341 1.46257 1.14290 1.53070 1.18400 1.19861 0.83742 0.80936 0.87714 1.90743 1.51323 1.59815 1.40122 1.20438 0.82295 0.78992 0.88384 1.90771 1.51266 1.56677 1.40581 1.43011 1.16395 1.56082 1.12170 1.17414 0.97714 0.94151 0.83716 1.20928 0.98979 0.93568 1.00322 1.20191 0.98571 0.99884 0.87159 1.20307 1.01427 0.96865 0.93243 1.70608 1.24818 1.26748 1.01110 1.27634 0.87764 0.83022 0.98206 1.20759 1.06748 1.07281 0.77149 1.84501 1.61761 1.50534 1.15189 1.20032 1.01966 0.98614 0.84034 1.19623 1.04500 1.02235 0.87372 0.93297 0.94358 0.94080 0.94254 0.90271 0.92359 0.75669 0.72006 0.80104 0.81148 0.86236 0.86157 0.87211 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.51 71.98 0.61 -4.64 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 13.56 2.24 44.25 0.10 13.66 16 4 H 0.02 1.01 7.58 -2.39 -0.02 0.99 16 5 C -0.55 -28.72 8.73 25.60 0.22 -28.50 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.16 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.85 11.29 21.45 0.24 -49.61 16 9 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.67 -27.78 5.01 -447.53 -2.24 -30.02 16 14 C 0.50 18.71 6.45 87.23 0.56 19.27 16 15 O -0.54 -21.88 13.62 -3.28 -0.04 -21.93 16 16 C 0.52 16.46 7.61 87.23 0.66 17.12 16 17 O -0.52 -18.39 14.17 -3.33 -0.05 -18.44 16 18 N -0.63 -15.39 5.32 -304.72 -1.62 -17.01 16 19 C 0.16 3.90 6.27 38.25 0.24 4.14 16 20 C -0.12 -2.00 9.88 22.15 0.22 -1.78 16 21 C -0.04 -0.71 10.04 22.22 0.22 -0.49 16 22 C -0.01 -0.17 7.24 39.34 0.28 0.12 16 23 N -0.50 -11.98 11.34 -296.13 -3.36 -15.33 16 24 C 0.24 4.92 8.24 88.39 0.73 5.65 16 25 C -0.06 -0.48 10.51 71.23 0.75 0.27 16 26 O -0.23 -5.88 10.78 -10.42 -0.11 -5.99 16 27 C 0.00 0.12 7.43 22.87 0.17 0.29 16 28 C -0.12 -3.24 8.66 22.44 0.19 -3.05 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 31 H 0.04 1.62 5.65 -2.39 -0.01 1.61 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 4.15 5.95 -2.39 -0.01 4.14 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.41 15.91 8.01 -92.71 -0.74 15.16 16 36 H 0.44 8.76 8.29 -92.71 -0.77 7.99 16 37 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.13 4.04 6.43 -2.91 -0.02 4.02 16 Total: -1.00 -68.61 357.56 0.02 -68.59 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.41 Total: 28.20 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.58 Total: 17.98 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -6.98 Total: -111.98 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.20 Total: -46.35 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -68.61 0.02 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128383848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.091 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds