Wall clock time and date at job start Tue Mar 31 2020 16:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.65470 * 2 1 4 4 C 1.38383 * 119.92676 * 92.64334 * 3 2 1 5 5 C 1.38333 * 120.29208 * 179.76463 * 4 3 2 6 6 C 1.37981 * 120.14459 * 0.50484 * 5 4 3 7 7 C 1.39560 * 119.85153 * 359.74801 * 6 5 4 8 8 C 1.47843 * 120.14338 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00256 * 359.97438 * 8 7 6 10 10 O 1.21558 * 120.00288 * 179.97438 * 8 7 6 11 11 C 1.37938 * 119.92891 * 272.91095 * 3 2 1 12 12 N 1.47315 * 110.59632 * 237.08834 * 2 1 3 13 13 C 1.34529 * 106.61887 * 241.47577 * 12 2 1 14 14 O 1.21532 * 123.77107 * 180.02562 * 13 12 2 15 15 N 1.33791 * 112.45727 * 359.97438 * 13 12 2 16 16 C 1.46503 * 124.17812 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.46940 * 270.04003 * 16 15 13 18 18 C 1.50703 * 109.47234 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99769 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00424 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47321 * 60.00428 * 22 20 18 24 24 H 1.48498 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47126 * 300.00201 * 22 20 18 26 26 C 1.34774 * 111.64532 * 0.02562 * 15 13 12 27 27 O 1.21228 * 127.15742 * 179.74021 * 26 15 13 28 28 H 1.09005 * 109.46909 * 297.78902 * 1 2 3 29 29 H 1.09005 * 109.47335 * 57.78664 * 1 2 3 30 30 H 1.08998 * 109.47460 * 177.78559 * 1 2 3 31 31 H 1.07997 * 119.85168 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93213 * 180.25770 * 5 4 3 33 33 H 1.08006 * 120.07567 * 179.72660 * 6 5 4 34 34 H 0.97000 * 119.99819 * 0.02562 * 9 8 7 35 35 H 0.97001 * 120.00200 * 179.97438 * 9 8 7 36 36 H 1.08004 * 120.06881 * 0.02562 * 11 3 2 37 37 H 0.96994 * 126.69054 * 61.43675 * 12 2 1 38 38 H 1.08999 * 109.46937 * 30.04257 * 16 15 13 39 39 H 1.09004 * 109.47081 * 150.04254 * 16 15 13 40 40 H 1.08999 * 109.47513 * 299.99902 * 17 16 15 41 41 H 1.09001 * 109.47758 * 60.00271 * 17 16 15 42 42 H 0.97006 * 119.99947 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.3569 2.0366 1.1980 5 6 2.8498 3.3291 1.2066 6 6 3.0403 4.0059 0.0194 7 6 2.7396 3.3818 -1.1921 8 6 2.9419 4.1007 -2.4679 9 7 3.4172 5.3619 -2.4628 10 8 2.6795 3.5545 -3.5217 11 6 2.2475 2.0755 -1.1939 12 7 2.0482 -0.7493 -1.1577 13 6 2.7598 -1.7781 -0.6628 14 8 3.3289 -2.6002 -1.3538 15 7 2.7719 -1.7946 0.6749 16 6 3.4681 -2.8019 1.4793 17 6 2.5238 -3.9728 1.7590 18 6 3.2401 -5.0093 2.5860 19 1 4.2661 -4.8487 2.8827 20 6 2.5854 -6.1620 2.9646 21 7 1.3358 -6.3573 2.6037 22 14 3.4730 -7.4464 3.9902 23 1 3.9058 -6.8412 5.2754 24 1 2.5566 -8.5829 4.2616 25 1 4.6625 -7.9365 3.2485 26 6 2.0636 -0.7708 1.1911 27 8 1.8861 -0.5211 2.3641 28 1 -0.3633 0.4791 0.9092 29 1 -0.3634 0.5478 -0.8695 30 1 -0.3634 -1.0269 -0.0397 31 1 2.2050 1.5129 2.1303 32 1 3.0822 3.8110 2.1448 33 1 3.4211 5.0166 0.0276 34 1 3.6269 5.7978 -1.6220 35 1 3.5502 5.8335 -3.3000 36 1 2.0122 1.5871 -2.1280 37 1 1.9040 -0.5416 -2.0941 38 1 4.3414 -3.1614 0.9351 39 1 3.7854 -2.3577 2.4228 40 1 1.6505 -3.6133 2.3033 41 1 2.2065 -4.4171 0.8157 42 1 0.8753 -7.1686 2.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128755889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:18 Heat of formation + Delta-G solvation = -55.764038 kcal Electronic energy + Delta-G solvation = -28163.047825 eV Core-core repulsion = 24108.798938 eV Total energy + Delta-G solvation = -4054.248887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47061 -40.40775 -38.80158 -38.20482 -36.27205 -35.31915 -34.23569 -33.11073 -31.81264 -31.41473 -29.92435 -29.64426 -25.78916 -24.70281 -24.49555 -23.08413 -22.09058 -21.59418 -20.54003 -19.71875 -18.61698 -17.79968 -17.22686 -16.83225 -16.39804 -16.34437 -15.93641 -15.58437 -15.13670 -15.00134 -14.90098 -14.57396 -14.43699 -14.14284 -14.12363 -13.84139 -13.47869 -12.97840 -12.73428 -12.61575 -12.48111 -12.35787 -12.11437 -11.64389 -11.47439 -10.95137 -10.89935 -10.56562 -10.45781 -10.18354 -10.15779 -10.09643 -9.86235 -9.51864 -9.35036 -9.29535 -9.22591 -8.92302 -8.39335 -6.04360 -4.08339 0.43233 0.86830 1.79939 2.44522 2.52406 3.03348 3.18377 3.33760 3.34808 3.37634 3.40529 3.49255 3.91674 4.07227 4.34975 4.44138 4.52893 4.57106 4.68613 4.96587 5.07213 5.23188 5.32240 5.33998 5.45134 5.49668 5.54950 5.79208 5.86513 5.94687 6.02869 6.03618 6.14888 6.28587 6.30666 6.43715 6.62817 6.86362 6.88115 7.32382 7.54748 7.61609 7.69513 7.81447 7.92004 8.26599 8.41473 8.96374 9.55725 11.07293 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.002740 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.922756 B =10216.454905 C =10573.128296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.162 3.838 3 C -0.094 4.094 4 C -0.078 4.078 5 C -0.121 4.121 6 C -0.081 4.081 7 C -0.143 4.143 8 C 0.565 3.435 9 N -0.852 5.852 10 O -0.537 6.537 11 C -0.036 4.036 12 N -0.726 5.726 13 C 0.703 3.297 14 O -0.532 6.532 15 N -0.564 5.564 16 C 0.119 3.881 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.534 3.466 27 O -0.463 6.463 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.405 0.595 36 H 0.137 0.863 37 H 0.436 0.564 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 26.667 -5.980 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.071 3.929 3 C -0.096 4.096 4 C -0.097 4.097 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.146 4.146 8 C 0.352 3.648 9 N -0.416 5.416 10 O -0.415 6.415 11 C -0.055 4.055 12 N -0.391 5.391 13 C 0.404 3.596 14 O -0.405 6.405 15 N -0.309 5.309 16 C 0.000 4.000 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.320 3.680 27 O -0.333 6.333 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.230 0.770 35 H 0.237 0.763 36 H 0.155 0.845 37 H 0.280 0.720 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.408 25.602 -6.204 26.346 hybrid contribution 0.484 -0.195 0.203 0.560 sum 0.892 25.406 -6.002 26.121 Atomic orbital electron populations 1.22020 0.89224 1.04537 1.04388 1.20147 0.97205 0.89500 0.86094 1.19438 1.02149 0.94005 0.93996 1.21759 0.94093 0.94975 0.98860 1.21121 0.99895 0.94645 0.98275 1.21340 0.97393 0.99416 0.91815 1.19766 1.06188 0.95773 0.92902 1.18254 0.76241 0.81515 0.88839 1.43739 1.69182 1.15801 1.12849 1.90839 1.50770 1.67182 1.32692 1.20915 0.94162 0.92532 0.97930 1.45684 1.55855 1.29134 1.08466 1.15909 0.79613 0.81870 0.82191 1.91011 1.47826 1.40719 1.60930 1.46703 1.48432 1.28093 1.07624 1.22254 0.96625 0.87937 0.93197 1.19409 0.94519 0.90919 0.97673 1.20948 0.98775 1.03051 1.33366 0.92272 1.24992 0.94890 0.98200 0.96109 1.69963 1.10424 1.26968 1.45685 0.86562 0.79461 0.80818 0.80616 1.20100 1.21234 1.20079 1.20394 0.77647 0.80701 0.89300 1.90727 1.56797 1.69447 1.16350 0.89626 0.90281 0.90286 0.83234 0.84677 0.85437 0.76960 0.76348 0.84524 0.71951 0.89566 0.89786 0.95999 0.95719 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.97 37.16 0.33 -1.16 16 2 C 0.16 2.03 1.16 -133.25 -0.15 1.88 16 3 C -0.09 -1.03 4.89 -104.68 -0.51 -1.54 16 4 C -0.08 -0.80 9.17 -39.49 -0.36 -1.16 16 5 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 6 C -0.08 -0.54 9.54 -39.18 -0.37 -0.91 16 7 C -0.14 -1.29 5.87 -104.97 -0.62 -1.91 16 8 C 0.57 5.32 8.05 -12.33 -0.10 5.22 16 9 N -0.85 -4.19 8.82 30.53 0.27 -3.92 16 10 O -0.54 -7.22 17.18 5.31 0.09 -7.13 16 11 C -0.04 -0.37 8.89 -39.19 -0.35 -0.72 16 12 N -0.73 -9.64 5.36 -54.02 -0.29 -9.93 16 13 C 0.70 12.78 8.62 -88.02 -0.76 12.02 16 14 O -0.53 -11.57 17.48 5.34 0.09 -11.48 16 15 N -0.56 -10.61 2.60 -120.73 -0.31 -10.92 16 16 C 0.12 2.54 5.64 -4.04 -0.02 2.52 16 17 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.53 8.83 6.46 -10.55 -0.07 8.76 16 27 O -0.46 -8.30 15.62 5.60 0.09 -8.22 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.15 1.70 5.61 -52.49 -0.29 1.41 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.38 6.41 -52.48 -0.34 0.04 16 34 H 0.40 0.79 6.86 -40.82 -0.28 0.51 16 35 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 36 H 0.14 1.38 6.70 -52.48 -0.35 1.03 16 37 H 0.44 4.65 8.18 -40.82 -0.33 4.32 16 38 H 0.09 1.84 7.86 -51.93 -0.41 1.43 16 39 H 0.08 1.71 8.01 -51.93 -0.42 1.29 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -36.92 361.75 -7.70 -44.62 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.86 Total: 2.71 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -3.94 Total: 8.37 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.40 Total: -51.04 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: 0.27 Total: -26.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.92 -7.70 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128755889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.148 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds