Wall clock time and date at job start Tue Mar 31 2020 16:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.65470 * 2 1 4 4 C 1.38383 * 119.92676 * 92.64334 * 3 2 1 5 5 C 1.38333 * 120.29208 * 179.76463 * 4 3 2 6 6 C 1.37981 * 120.14459 * 0.50484 * 5 4 3 7 7 C 1.39560 * 119.85153 * 359.74801 * 6 5 4 8 8 C 1.47843 * 120.14338 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00256 * 359.97438 * 8 7 6 10 10 O 1.21558 * 120.00288 * 179.97438 * 8 7 6 11 11 C 1.37938 * 119.92891 * 272.91095 * 3 2 1 12 12 N 1.47315 * 110.59632 * 237.08834 * 2 1 3 13 13 C 1.34529 * 106.61887 * 241.47577 * 12 2 1 14 14 O 1.21532 * 123.77107 * 180.02562 * 13 12 2 15 15 N 1.33791 * 112.45727 * 359.97438 * 13 12 2 16 16 C 1.46503 * 124.17812 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.46940 * 270.04003 * 16 15 13 18 18 C 1.50703 * 109.47234 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99769 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00424 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47321 * 60.00428 * 22 20 18 24 24 H 1.48498 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47126 * 300.00201 * 22 20 18 26 26 C 1.34774 * 111.64532 * 0.02562 * 15 13 12 27 27 O 1.21228 * 127.15742 * 179.74021 * 26 15 13 28 28 H 1.09005 * 109.46909 * 297.78902 * 1 2 3 29 29 H 1.09005 * 109.47335 * 57.78664 * 1 2 3 30 30 H 1.08998 * 109.47460 * 177.78559 * 1 2 3 31 31 H 1.07997 * 119.85168 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93213 * 180.25770 * 5 4 3 33 33 H 1.08006 * 120.07567 * 179.72660 * 6 5 4 34 34 H 0.97000 * 119.99819 * 0.02562 * 9 8 7 35 35 H 0.97001 * 120.00200 * 179.97438 * 9 8 7 36 36 H 1.08004 * 120.06881 * 0.02562 * 11 3 2 37 37 H 0.96994 * 126.69054 * 61.43675 * 12 2 1 38 38 H 1.08999 * 109.46937 * 30.04257 * 16 15 13 39 39 H 1.09004 * 109.47081 * 150.04254 * 16 15 13 40 40 H 1.08999 * 109.47513 * 299.99902 * 17 16 15 41 41 H 1.09001 * 109.47758 * 60.00271 * 17 16 15 42 42 H 0.97006 * 119.99947 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.3569 2.0366 1.1980 5 6 2.8498 3.3291 1.2066 6 6 3.0403 4.0059 0.0194 7 6 2.7396 3.3818 -1.1921 8 6 2.9419 4.1007 -2.4679 9 7 3.4172 5.3619 -2.4628 10 8 2.6795 3.5545 -3.5217 11 6 2.2475 2.0755 -1.1939 12 7 2.0482 -0.7493 -1.1577 13 6 2.7598 -1.7781 -0.6628 14 8 3.3289 -2.6002 -1.3538 15 7 2.7719 -1.7946 0.6749 16 6 3.4681 -2.8019 1.4793 17 6 2.5238 -3.9728 1.7590 18 6 3.2401 -5.0093 2.5860 19 1 4.2661 -4.8487 2.8827 20 6 2.5854 -6.1620 2.9646 21 7 1.3358 -6.3573 2.6037 22 14 3.4730 -7.4464 3.9902 23 1 3.9058 -6.8412 5.2754 24 1 2.5566 -8.5829 4.2616 25 1 4.6625 -7.9365 3.2485 26 6 2.0636 -0.7708 1.1911 27 8 1.8861 -0.5211 2.3641 28 1 -0.3633 0.4791 0.9092 29 1 -0.3634 0.5478 -0.8695 30 1 -0.3634 -1.0269 -0.0397 31 1 2.2050 1.5129 2.1303 32 1 3.0822 3.8110 2.1448 33 1 3.4211 5.0166 0.0276 34 1 3.6269 5.7978 -1.6220 35 1 3.5502 5.8335 -3.3000 36 1 2.0122 1.5871 -2.1280 37 1 1.9040 -0.5416 -2.0941 38 1 4.3414 -3.1614 0.9351 39 1 3.7854 -2.3577 2.4228 40 1 1.6505 -3.6133 2.3033 41 1 2.2065 -4.4171 0.8157 42 1 0.8753 -7.1686 2.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128755889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:17 Heat of formation + Delta-G solvation = -84.380163 kcal Electronic energy + Delta-G solvation = -28164.288714 eV Core-core repulsion = 24108.798938 eV Total energy + Delta-G solvation = -4055.489775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.78862 -41.15539 -39.94635 -39.30567 -37.53848 -36.91103 -35.19761 -34.80387 -32.92786 -32.18666 -31.69649 -30.49440 -27.56724 -25.91842 -25.32148 -24.24138 -23.86092 -22.44841 -21.72123 -20.93909 -19.43337 -19.05719 -18.65242 -18.03632 -17.67404 -17.37907 -17.11208 -16.65403 -16.56584 -16.43023 -15.96886 -15.84441 -15.54293 -15.20025 -15.09084 -14.93234 -14.68863 -14.61319 -14.27257 -13.69013 -13.56260 -13.46981 -13.24444 -12.91768 -12.84754 -12.77848 -12.29855 -12.13695 -12.11112 -11.96625 -11.47942 -11.34933 -11.11619 -10.83160 -10.73841 -10.61598 -10.56684 -10.04067 -9.98339 -8.25598 -6.38797 -0.26395 0.16165 0.46427 1.12245 1.40640 1.44723 1.52353 1.73194 1.88008 2.05737 2.39446 2.47728 2.71019 2.78532 3.08682 3.15713 3.66421 3.80269 3.86101 3.95112 4.07112 4.20897 4.36060 4.38970 4.41140 4.46325 4.53366 4.64256 4.68870 4.73366 4.87628 5.01368 5.16350 5.30023 5.33887 5.35296 5.40952 5.67690 5.70593 5.74619 5.87384 6.01070 6.06179 6.26458 6.40439 6.74719 7.00183 7.27293 7.30994 8.87091 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.002740 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.922756 B =10216.454905 C =10573.128296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.174 3.826 3 C -0.105 4.105 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.061 4.061 7 C -0.151 4.151 8 C 0.562 3.438 9 N -0.827 5.827 10 O -0.587 6.587 11 C -0.046 4.046 12 N -0.702 5.702 13 C 0.700 3.300 14 O -0.576 6.576 15 N -0.576 5.576 16 C 0.133 3.867 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.072 0.928 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.974 3.026 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.266 1.266 26 C 0.528 3.472 27 O -0.479 6.479 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.418 0.582 35 H 0.414 0.586 36 H 0.132 0.868 37 H 0.450 0.550 38 H 0.085 0.915 39 H 0.096 0.904 40 H -0.006 1.006 41 H -0.012 1.012 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 29.558 -5.205 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.084 3.916 3 C -0.107 4.107 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.154 4.154 8 C 0.349 3.651 9 N -0.392 5.392 10 O -0.468 6.468 11 C -0.065 4.065 12 N -0.367 5.367 13 C 0.401 3.599 14 O -0.452 6.452 15 N -0.320 5.320 16 C 0.013 3.987 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.090 0.910 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.190 1.190 26 C 0.315 3.685 27 O -0.350 6.350 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.182 0.818 33 H 0.190 0.810 34 H 0.251 0.749 35 H 0.246 0.754 36 H 0.150 0.850 37 H 0.297 0.703 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.012 0.988 41 H 0.006 0.994 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.428 28.606 -5.421 29.150 hybrid contribution 0.142 -0.939 -0.018 0.950 sum 1.570 27.667 -5.440 28.240 Atomic orbital electron populations 1.22086 0.87361 1.04214 1.06315 1.20202 0.98343 0.89906 0.83188 1.19189 1.04014 0.92691 0.94789 1.21761 0.95162 0.96375 0.97785 1.21448 0.98437 0.93409 0.99980 1.21768 0.95050 1.00914 0.90204 1.19881 1.06327 0.95401 0.93817 1.18370 0.76079 0.82483 0.88201 1.43554 1.67024 1.14248 1.14338 1.90822 1.53262 1.68557 1.34197 1.20899 0.94867 0.93469 0.97280 1.45565 1.54104 1.27536 1.09539 1.16036 0.79762 0.82345 0.81787 1.90972 1.49928 1.42621 1.61650 1.46664 1.49067 1.28313 1.08001 1.21800 0.95414 0.87222 0.94243 1.19174 0.94480 0.92478 0.95183 1.21430 0.99543 1.03800 1.33597 0.91009 1.26044 0.95664 1.00714 0.97343 1.70111 1.12242 1.27827 1.47004 0.85371 0.78235 0.77590 0.79090 1.18601 1.20817 1.19044 1.21075 0.76856 0.80273 0.90262 1.90708 1.57101 1.69753 1.17418 0.88675 0.87304 0.91786 0.84792 0.81758 0.81015 0.74906 0.75389 0.85050 0.70288 0.89617 0.88621 0.98777 0.99381 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.97 71.98 0.65 -2.24 16 2 C 0.17 4.36 1.16 2.24 0.00 4.36 16 3 C -0.11 -2.19 4.89 -19.90 -0.10 -2.29 16 4 C -0.09 -1.74 9.17 22.33 0.20 -1.53 16 5 C -0.12 -1.34 10.03 22.23 0.22 -1.12 16 6 C -0.06 -0.55 9.54 22.53 0.21 -0.34 16 7 C -0.15 -2.33 5.87 -20.09 -0.12 -2.45 16 8 C 0.56 9.34 8.05 86.79 0.70 10.04 16 9 N -0.83 -5.35 8.82 -175.60 -1.55 -6.90 16 10 O -0.59 -15.33 17.18 -3.90 -0.07 -15.39 16 11 C -0.05 -0.88 8.89 22.52 0.20 -0.68 16 12 N -0.70 -18.96 5.36 -443.26 -2.38 -21.34 16 13 C 0.70 26.46 8.62 179.44 1.55 28.01 16 14 O -0.58 -26.20 17.48 -3.82 -0.07 -26.27 16 15 N -0.58 -22.56 2.60 -773.13 -2.01 -24.57 16 16 C 0.13 5.95 5.64 86.38 0.49 6.44 16 17 C 0.02 1.38 5.30 29.85 0.16 1.53 16 18 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 19 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 20 C 0.00 0.04 5.46 84.65 0.46 0.50 16 21 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 22 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 C 0.53 17.90 6.46 87.94 0.57 18.47 16 27 O -0.48 -17.59 15.62 -2.87 -0.04 -17.63 16 28 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.13 2.97 5.61 -2.91 -0.02 2.96 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.17 -0.03 6.41 -2.91 -0.02 -0.05 16 34 H 0.42 -0.30 6.86 -92.71 -0.64 -0.93 16 35 H 0.41 1.90 8.93 -92.71 -0.83 1.07 16 36 H 0.13 2.60 6.70 -2.91 -0.02 2.58 16 37 H 0.45 9.63 8.18 -92.71 -0.76 8.87 16 38 H 0.09 3.80 7.86 -2.39 -0.02 3.78 16 39 H 0.10 3.99 8.01 -2.39 -0.02 3.98 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -84.63 361.75 0.52 -84.12 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -1.11 Total: 11.71 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 5.43 Total: 27.29 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.65 Total: -110.65 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -0.18 Total: -59.29 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -84.63 0.52 -84.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128755889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.262 kcal (2) G-P(sol) polarization free energy of solvation -84.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds