Wall clock time and date at job start Tue Mar 31 2020 16:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29887 * 124.85386 * 2 1 4 4 C 1.36096 * 108.81794 * 179.97438 * 3 2 1 5 5 C 1.39641 * 133.72517 * 180.02562 * 4 3 2 6 6 C 1.36555 * 119.94672 * 180.02562 * 5 4 3 7 7 C 1.39376 * 120.48616 * 0.02562 * 6 5 4 8 8 N 1.39748 * 119.84543 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99971 * 146.25425 * 8 7 6 10 10 O 1.21381 * 120.00327 * 354.87187 * 9 8 7 11 11 C 1.49338 * 119.99850 * 174.87893 * 9 8 7 12 12 O 1.21357 * 120.00009 * 5.65613 * 11 9 8 13 13 N 1.34770 * 119.99790 * 185.66445 * 11 9 8 14 14 C 1.46507 * 120.00107 * 356.68274 * 13 11 9 15 15 C 1.46497 * 119.99966 * 176.68735 * 13 11 9 16 16 H 1.08999 * 109.47256 * 359.97438 * 15 13 11 17 17 C 1.53008 * 109.47094 * 239.99675 * 15 13 11 18 18 C 1.50700 * 109.47545 * 119.99908 * 15 13 11 19 19 H 1.08009 * 119.99820 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00437 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00224 * 179.71790 * 20 18 15 22 22 Si 1.86797 * 119.99935 * 359.97438 * 20 18 15 23 23 H 1.48502 * 109.47079 * 269.72379 * 22 20 18 24 24 H 1.48507 * 109.47106 * 29.72177 * 22 20 18 25 25 H 1.48502 * 109.47211 * 149.72133 * 22 20 18 26 26 C 1.38621 * 120.30133 * 0.24809 * 7 6 5 27 27 C 1.38570 * 119.67737 * 359.45949 * 26 7 6 28 28 O 1.34285 * 124.84888 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47525 * 270.02592 * 1 2 3 30 30 H 1.09001 * 109.47349 * 30.02526 * 1 2 3 31 31 H 1.09008 * 109.47486 * 150.01997 * 1 2 3 32 32 H 1.07997 * 120.02755 * 359.97299 * 5 4 3 33 33 H 1.08004 * 119.75794 * 179.97438 * 6 5 4 34 34 H 0.97004 * 119.99472 * 326.24242 * 8 7 6 35 35 H 1.08995 * 109.46891 * 275.87286 * 14 13 11 36 36 H 1.08995 * 109.46754 * 35.87443 * 14 13 11 37 37 H 1.09004 * 109.46751 * 155.87375 * 14 13 11 38 38 H 1.08999 * 109.46680 * 299.99877 * 17 15 13 39 39 H 1.08997 * 109.47270 * 60.00013 * 17 15 13 40 40 H 1.08998 * 109.47016 * 180.02562 * 17 15 13 41 41 H 0.96999 * 119.99984 * 180.27059 * 21 20 18 42 42 H 1.08005 * 120.15842 * 179.70833 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2492 1.0659 0.0000 4 6 3.5572 0.6899 0.0006 5 6 4.7636 1.3932 0.0013 6 6 5.9484 0.7142 0.0012 7 6 5.9648 -0.6794 -0.0001 8 7 7.1850 -1.3607 -0.0007 9 6 7.3002 -2.5372 0.6466 10 8 6.3737 -2.9599 1.3071 11 6 8.5680 -3.3207 0.5513 12 8 9.5292 -2.8522 -0.0226 13 7 8.6445 -4.5481 1.1026 14 6 7.5092 -5.0841 1.8577 15 6 9.8631 -5.3463 0.9469 16 1 10.5912 -4.7870 0.3595 17 6 9.5271 -6.6554 0.2296 18 6 10.4406 -5.6517 2.3049 19 1 9.9493 -5.2872 3.1951 20 6 11.5961 -6.3963 2.4112 21 7 12.1032 -6.6580 3.5961 22 14 12.4455 -7.0273 0.8718 23 1 11.9137 -8.3706 0.5284 24 1 12.1906 -6.0917 -0.2530 25 1 13.9072 -7.1212 1.1160 26 6 4.7762 -1.3928 -0.0065 27 6 3.5684 -0.7137 -0.0003 28 8 2.2742 -1.1020 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 4.7596 2.4731 0.0010 33 1 6.8797 1.2612 0.0014 34 1 7.9489 -0.9867 -0.4671 35 1 7.5512 -4.7199 2.8841 36 1 6.5782 -4.7580 1.3942 37 1 7.5538 -6.1733 1.8564 38 1 8.7988 -7.2148 0.8168 39 1 9.1094 -6.4346 -0.7527 40 1 10.4336 -7.2494 0.1142 41 1 12.9183 -7.1786 3.6706 42 1 4.7916 -2.4728 -0.0123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132216998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:56 Heat of formation + Delta-G solvation = 1.877676 kcal Electronic energy + Delta-G solvation = -27631.807758 eV Core-core repulsion = 23580.058403 eV Total energy + Delta-G solvation = -4051.749355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.47333 -40.99517 -39.05723 -37.76768 -36.10089 -35.25068 -34.36081 -32.75445 -31.59882 -30.82131 -30.49914 -28.06160 -26.44926 -25.35512 -24.74970 -23.67817 -22.62709 -21.77739 -20.85795 -19.58630 -18.62580 -17.81417 -17.23504 -17.07088 -16.91801 -16.65770 -16.01620 -15.77768 -15.28187 -14.70941 -14.65224 -14.31755 -14.17034 -13.73774 -13.62281 -13.58148 -13.35947 -13.04235 -12.83312 -12.77841 -12.48643 -12.32409 -12.16394 -11.97458 -11.87840 -11.64959 -11.28414 -10.91170 -10.78803 -10.72009 -10.24276 -10.20613 -9.71875 -9.45612 -9.17376 -8.98348 -8.72121 -8.21101 -7.96159 -6.21944 -4.24317 0.34933 0.92671 1.57179 2.09100 2.16241 2.52558 3.17321 3.28968 3.30823 3.31673 3.48577 3.52766 3.78765 4.26753 4.27135 4.50785 4.64894 4.65181 4.74922 4.91937 4.96887 5.09575 5.11354 5.21834 5.47786 5.66867 5.75829 5.78973 5.83526 5.96436 6.04727 6.09244 6.14522 6.20087 6.30475 6.38788 6.52173 6.71054 6.78434 6.98526 7.07164 7.34776 7.47076 7.64573 7.92369 8.26251 8.44772 8.79628 9.36656 10.90500 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028304 B = 0.002442 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.022201 B =11462.448455 C =11909.050848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.240 3.760 3 N -0.478 5.478 4 C 0.004 3.996 5 C -0.040 4.040 6 C -0.135 4.135 7 C 0.179 3.821 8 N -0.648 5.648 9 C 0.510 3.490 10 O -0.491 6.491 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.544 5.544 14 C 0.071 3.929 15 C 0.226 3.774 16 H 0.066 0.934 17 C -0.163 4.163 18 C -0.531 4.531 19 H 0.081 0.919 20 C 0.077 3.923 21 N -0.891 5.891 22 Si 0.883 3.117 23 H -0.276 1.276 24 H -0.263 1.263 25 H -0.292 1.292 26 C -0.101 4.101 27 C 0.033 3.967 28 O -0.212 6.212 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.428 0.572 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.267 0.733 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.886 12.868 -9.477 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.028 3.972 3 N -0.208 5.208 4 C -0.108 4.108 5 C -0.060 4.060 6 C -0.156 4.156 7 C 0.083 3.917 8 N -0.296 5.296 9 C 0.294 3.706 10 O -0.365 6.365 11 C 0.278 3.722 12 O -0.413 6.413 13 N -0.274 5.274 14 C -0.071 4.071 15 C 0.125 3.875 16 H 0.084 0.916 17 C -0.221 4.221 18 C -0.569 4.569 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.713 3.287 23 H -0.203 1.203 24 H -0.188 1.188 25 H -0.220 1.220 26 C -0.122 4.122 27 C -0.018 4.018 28 O -0.103 6.103 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.034 13.204 -9.171 25.686 hybrid contribution 1.174 -1.059 -0.698 1.729 sum -18.860 12.145 -9.869 24.507 Atomic orbital electron populations 1.20401 0.80906 1.05516 1.05195 1.26443 0.96616 0.78267 0.95843 1.70575 1.00918 1.28980 1.20309 1.19851 0.92217 0.91252 1.07471 1.19795 0.88007 1.00259 0.97899 1.20606 0.99015 0.91816 1.04154 1.17239 0.84713 0.90717 0.99017 1.43252 1.12164 1.21467 1.52672 1.20911 0.89423 0.81473 0.78829 1.90701 1.41172 1.66767 1.37812 1.19500 0.87221 0.83383 0.82138 1.90730 1.37314 1.68888 1.44320 1.47886 1.17524 1.14190 1.47805 1.22212 0.88244 1.00062 0.96599 1.19524 0.81909 0.87832 0.98198 0.91582 1.22483 1.01279 0.99611 0.98699 1.21086 1.09961 1.34693 0.91192 0.90098 1.24858 0.96394 0.95331 0.96040 1.69865 1.21330 1.38835 1.22719 0.86920 0.78327 0.79599 0.83883 1.20267 1.18777 1.21965 1.19634 0.86318 1.01263 1.04994 1.19876 0.83635 0.94008 1.04320 1.84502 1.15206 1.36152 1.74490 0.88349 0.87727 0.88877 0.84050 0.83732 0.73321 0.92318 0.89312 0.90898 0.92131 0.94578 0.92739 0.92266 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.00 0.38 0.08 16 2 C 0.24 2.46 8.24 -13.10 -0.11 2.35 16 3 N -0.48 -5.83 11.34 -8.66 -0.10 -5.93 16 4 C 0.00 0.05 7.24 -84.65 -0.61 -0.56 16 5 C -0.04 -0.41 10.04 -39.67 -0.40 -0.81 16 6 C -0.13 -1.30 9.88 -39.77 -0.39 -1.69 16 7 C 0.18 2.14 6.27 -83.68 -0.52 1.61 16 8 N -0.65 -8.13 5.32 -10.26 -0.05 -8.18 16 9 C 0.51 8.05 7.50 -11.64 -0.09 7.96 16 10 O -0.49 -8.19 10.85 5.47 0.06 -8.13 16 11 C 0.50 9.49 7.73 -11.64 -0.09 9.40 16 12 O -0.53 -11.16 15.82 5.49 0.09 -11.08 16 13 N -0.54 -11.13 2.75 -175.81 -0.48 -11.62 16 14 C 0.07 1.27 8.75 59.85 0.52 1.80 16 15 C 0.23 5.28 2.22 -69.08 -0.15 5.13 16 16 H 0.07 1.67 5.96 -51.93 -0.31 1.36 16 17 C -0.16 -3.37 8.66 37.16 0.32 -3.04 16 18 C -0.53 -14.41 8.95 -34.44 -0.31 -14.72 16 19 H 0.08 2.39 7.89 -52.48 -0.41 1.98 16 20 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 21 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 22 Si 0.88 21.10 24.37 -169.99 -4.14 16.96 16 23 H -0.28 -6.31 6.88 56.52 0.39 -5.92 16 24 H -0.26 -6.11 6.52 56.52 0.37 -5.75 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.10 -1.33 8.66 -39.32 -0.34 -1.67 16 27 C 0.03 0.43 7.43 -38.66 -0.29 0.14 16 28 O -0.21 -2.63 10.78 3.48 0.04 -2.59 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 34 H 0.43 4.58 8.30 -40.82 -0.34 4.24 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.43 5.36 -51.94 -0.28 1.15 16 37 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 38 H 0.06 1.17 6.67 -51.93 -0.35 0.83 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.15 2.05 6.45 -52.48 -0.34 1.71 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -33.64 348.66 -5.41 -39.05 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.67 Total: 3.80 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -2.18 Total: 8.05 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.14 Total: -51.32 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.18 Total: -21.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.64 -5.41 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132216998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds