Wall clock time and date at job start Tue Mar 31 2020 16:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29887 * 124.85386 * 2 1 4 4 C 1.36096 * 108.81794 * 179.97438 * 3 2 1 5 5 C 1.39641 * 133.72517 * 180.02562 * 4 3 2 6 6 C 1.36555 * 119.94672 * 180.02562 * 5 4 3 7 7 C 1.39376 * 120.48616 * 0.02562 * 6 5 4 8 8 N 1.39748 * 119.84543 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99971 * 146.25425 * 8 7 6 10 10 O 1.21381 * 120.00327 * 354.87187 * 9 8 7 11 11 C 1.49338 * 119.99850 * 174.87893 * 9 8 7 12 12 O 1.21357 * 120.00009 * 5.65613 * 11 9 8 13 13 N 1.34770 * 119.99790 * 185.66445 * 11 9 8 14 14 C 1.46507 * 120.00107 * 356.68274 * 13 11 9 15 15 C 1.46497 * 119.99966 * 176.68735 * 13 11 9 16 16 H 1.08999 * 109.47256 * 359.97438 * 15 13 11 17 17 C 1.53008 * 109.47094 * 239.99675 * 15 13 11 18 18 C 1.50700 * 109.47545 * 119.99908 * 15 13 11 19 19 H 1.08009 * 119.99820 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00437 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00224 * 179.71790 * 20 18 15 22 22 Si 1.86797 * 119.99935 * 359.97438 * 20 18 15 23 23 H 1.48502 * 109.47079 * 269.72379 * 22 20 18 24 24 H 1.48507 * 109.47106 * 29.72177 * 22 20 18 25 25 H 1.48502 * 109.47211 * 149.72133 * 22 20 18 26 26 C 1.38621 * 120.30133 * 0.24809 * 7 6 5 27 27 C 1.38570 * 119.67737 * 359.45949 * 26 7 6 28 28 O 1.34285 * 124.84888 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47525 * 270.02592 * 1 2 3 30 30 H 1.09001 * 109.47349 * 30.02526 * 1 2 3 31 31 H 1.09008 * 109.47486 * 150.01997 * 1 2 3 32 32 H 1.07997 * 120.02755 * 359.97299 * 5 4 3 33 33 H 1.08004 * 119.75794 * 179.97438 * 6 5 4 34 34 H 0.97004 * 119.99472 * 326.24242 * 8 7 6 35 35 H 1.08995 * 109.46891 * 275.87286 * 14 13 11 36 36 H 1.08995 * 109.46754 * 35.87443 * 14 13 11 37 37 H 1.09004 * 109.46751 * 155.87375 * 14 13 11 38 38 H 1.08999 * 109.46680 * 299.99877 * 17 15 13 39 39 H 1.08997 * 109.47270 * 60.00013 * 17 15 13 40 40 H 1.08998 * 109.47016 * 180.02562 * 17 15 13 41 41 H 0.96999 * 119.99984 * 180.27059 * 21 20 18 42 42 H 1.08005 * 120.15842 * 179.70833 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2492 1.0659 0.0000 4 6 3.5572 0.6899 0.0006 5 6 4.7636 1.3932 0.0013 6 6 5.9484 0.7142 0.0012 7 6 5.9648 -0.6794 -0.0001 8 7 7.1850 -1.3607 -0.0007 9 6 7.3002 -2.5372 0.6466 10 8 6.3737 -2.9599 1.3071 11 6 8.5680 -3.3207 0.5513 12 8 9.5292 -2.8522 -0.0226 13 7 8.6445 -4.5481 1.1026 14 6 7.5092 -5.0841 1.8577 15 6 9.8631 -5.3463 0.9469 16 1 10.5912 -4.7870 0.3595 17 6 9.5271 -6.6554 0.2296 18 6 10.4406 -5.6517 2.3049 19 1 9.9493 -5.2872 3.1951 20 6 11.5961 -6.3963 2.4112 21 7 12.1032 -6.6580 3.5961 22 14 12.4455 -7.0273 0.8718 23 1 11.9137 -8.3706 0.5284 24 1 12.1906 -6.0917 -0.2530 25 1 13.9072 -7.1212 1.1160 26 6 4.7762 -1.3928 -0.0065 27 6 3.5684 -0.7137 -0.0003 28 8 2.2742 -1.1020 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 4.7596 2.4731 0.0010 33 1 6.8797 1.2612 0.0014 34 1 7.9489 -0.9867 -0.4671 35 1 7.5512 -4.7199 2.8841 36 1 6.5782 -4.7580 1.3942 37 1 7.5538 -6.1733 1.8564 38 1 8.7988 -7.2148 0.8168 39 1 9.1094 -6.4346 -0.7527 40 1 10.4336 -7.2494 0.1142 41 1 12.9183 -7.1786 3.6706 42 1 4.7916 -2.4728 -0.0123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132216998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:55 Heat of formation + Delta-G solvation = -24.458048 kcal Electronic energy + Delta-G solvation = -27632.949761 eV Core-core repulsion = 23580.058403 eV Total energy + Delta-G solvation = -4052.891358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.32839 -42.27753 -40.37797 -38.91626 -37.67764 -36.27775 -35.38559 -34.68923 -32.36230 -32.29244 -31.61931 -28.94383 -27.92397 -27.22249 -26.17304 -24.54930 -23.76341 -22.69177 -22.14525 -20.98312 -19.72405 -19.06479 -18.70352 -18.32399 -18.05066 -17.92279 -17.43738 -17.24338 -16.67134 -16.17762 -15.61319 -15.52184 -15.21538 -14.88507 -14.86412 -14.74474 -14.22205 -14.16045 -14.11506 -14.01590 -13.71576 -13.66661 -13.51367 -13.25947 -13.09779 -12.90471 -12.65576 -12.53589 -12.31510 -12.07644 -11.68394 -11.54536 -11.41939 -11.19585 -10.82467 -10.49425 -9.96992 -9.65489 -9.11594 -8.36476 -6.43625 -0.56815 0.04564 0.29553 1.04026 1.28530 1.29743 1.37226 1.45771 1.47425 1.99876 2.26989 2.44023 2.51607 2.81866 2.97800 3.15829 3.40957 3.85236 3.88951 3.93921 4.22558 4.30400 4.39130 4.44256 4.50262 4.58105 4.61980 4.63248 4.71460 4.76648 4.87025 4.92701 4.95736 4.99505 5.04642 5.14792 5.20819 5.27999 5.36253 5.50740 5.55323 5.80763 6.10223 6.37077 6.50152 6.54343 6.60541 6.83765 7.22144 8.79583 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028304 B = 0.002442 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.022201 B =11462.448455 C =11909.050848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.245 3.755 3 N -0.504 5.504 4 C -0.007 4.007 5 C -0.040 4.040 6 C -0.118 4.118 7 C 0.165 3.835 8 N -0.629 5.629 9 C 0.520 3.480 10 O -0.503 6.503 11 C 0.494 3.506 12 O -0.554 6.554 13 N -0.557 5.557 14 C 0.077 3.923 15 C 0.229 3.771 16 H 0.049 0.951 17 C -0.157 4.157 18 C -0.533 4.533 19 H 0.041 0.959 20 C 0.022 3.978 21 N -0.938 5.938 22 Si 0.944 3.056 23 H -0.254 1.254 24 H -0.252 1.252 25 H -0.295 1.295 26 C -0.111 4.111 27 C 0.005 3.995 28 O -0.226 6.226 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.438 0.562 35 H 0.044 0.956 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.270 0.730 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.282 13.938 -11.429 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 N -0.234 5.234 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.139 4.139 7 C 0.070 3.930 8 N -0.277 5.277 9 C 0.302 3.698 10 O -0.378 6.378 11 C 0.276 3.724 12 O -0.433 6.433 13 N -0.287 5.287 14 C -0.064 4.064 15 C 0.126 3.874 16 H 0.067 0.933 17 C -0.215 4.215 18 C -0.571 4.571 19 H 0.059 0.941 20 C -0.177 4.177 21 N -0.577 5.577 22 Si 0.770 3.230 23 H -0.179 1.179 24 H -0.176 1.176 25 H -0.223 1.223 26 C -0.133 4.133 27 C -0.046 4.046 28 O -0.118 6.118 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.186 0.814 33 H 0.196 0.804 34 H 0.279 0.721 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.468 14.311 -11.146 28.106 hybrid contribution 1.460 -1.249 -0.034 1.922 sum -20.007 13.063 -11.180 26.380 Atomic orbital electron populations 1.20758 0.77188 1.07202 1.06811 1.27618 0.98311 0.77333 0.93287 1.70613 1.00933 1.29752 1.22139 1.20300 0.93253 0.91224 1.07098 1.20168 0.87190 1.01595 0.96992 1.20916 1.00329 0.90648 1.02018 1.17377 0.83727 0.91638 1.00245 1.43016 1.12900 1.20166 1.51588 1.20160 0.87851 0.82255 0.79505 1.90697 1.40936 1.67431 1.38705 1.20016 0.88200 0.82975 0.81171 1.90706 1.38460 1.69224 1.44960 1.47895 1.17252 1.14820 1.48700 1.22257 0.88195 1.00222 0.95748 1.19251 0.82925 0.89402 0.95785 0.93342 1.22359 1.01438 0.97725 0.99964 1.21273 1.09940 1.33964 0.91917 0.94113 1.25706 0.97137 0.95661 0.99161 1.70008 1.22180 1.40322 1.25215 0.85928 0.76798 0.80146 0.80081 1.17905 1.17625 1.22284 1.19619 0.87097 1.00820 1.05752 1.20032 0.83976 0.94656 1.05900 1.84502 1.15233 1.37280 1.74810 0.86518 0.86123 0.87004 0.81357 0.80366 0.72128 0.93769 0.87332 0.90463 0.91164 0.91797 0.93270 0.92108 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.23 0.75 0.31 16 2 C 0.25 4.73 8.24 88.39 0.73 5.46 16 3 N -0.50 -11.72 11.34 -296.12 -3.36 -15.07 16 4 C -0.01 -0.17 7.24 39.34 0.28 0.11 16 5 C -0.04 -0.73 10.04 22.22 0.22 -0.50 16 6 C -0.12 -1.98 9.88 22.15 0.22 -1.76 16 7 C 0.16 3.72 6.27 38.24 0.24 3.96 16 8 N -0.63 -14.94 5.32 -304.72 -1.62 -16.56 16 9 C 0.52 16.08 7.50 87.24 0.65 16.74 16 10 O -0.50 -16.62 10.85 -3.34 -0.04 -16.66 16 11 C 0.49 18.73 7.73 87.24 0.67 19.41 16 12 O -0.55 -22.92 15.82 -3.27 -0.05 -22.98 16 13 N -0.56 -22.76 2.75 -828.50 -2.28 -25.04 16 14 C 0.08 2.77 8.75 127.77 1.12 3.89 16 15 C 0.23 10.62 2.22 44.25 0.10 10.72 16 16 H 0.05 2.43 5.96 -2.39 -0.01 2.42 16 17 C -0.16 -6.19 8.66 71.98 0.62 -5.57 16 18 C -0.53 -29.61 8.95 25.60 0.23 -29.38 16 19 H 0.04 2.53 7.89 -2.91 -0.02 2.50 16 20 C 0.02 1.27 5.45 84.65 0.46 1.73 16 21 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 22 Si 0.94 43.23 24.37 68.60 1.67 44.90 16 23 H -0.25 -10.67 6.88 99.48 0.68 -9.98 16 24 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 26 C -0.11 -2.91 8.66 22.44 0.19 -2.72 16 27 C 0.01 0.13 7.43 22.87 0.17 0.30 16 28 O -0.23 -5.53 10.78 -10.47 -0.11 -5.65 16 29 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.44 8.59 8.30 -92.71 -0.77 7.82 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.11 3.45 5.36 -2.48 -0.01 3.44 16 37 H 0.08 2.65 6.44 -2.38 -0.02 2.63 16 38 H 0.07 2.60 6.67 -2.39 -0.02 2.58 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.98 3.27 -2.39 -0.01 1.98 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.14 3.80 6.45 -2.91 -0.02 3.78 16 Total: -1.00 -75.20 348.66 1.42 -73.78 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.25 Total: 17.34 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.67 Total: 22.69 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -6.96 Total: -113.43 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.20 Total: -45.28 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.67 Total: 44.90 kcal Total: -75.20 1.42 -73.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132216998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.322 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds