Wall clock time and date at job start Tue Mar 31 2020 16:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46593 * 2 1 4 4 N 1.30525 * 126.34385 * 89.97836 * 3 2 1 5 5 N 1.28598 * 109.67023 * 179.97438 * 4 3 2 6 6 C 1.30516 * 109.67461 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34910 * 179.97438 * 6 5 4 8 8 O 1.45208 * 109.47242 * 90.01779 * 7 6 5 9 9 C 1.34756 * 116.99931 * 179.97438 * 8 7 6 10 10 O 1.21514 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.47396 * 119.99675 * 180.02562 * 9 8 7 12 12 C 1.39720 * 120.20659 * 0.02562 * 11 9 8 13 13 C 1.37802 * 119.91685 * 180.02562 * 12 11 9 14 14 C 1.38588 * 120.33214 * 359.97438 * 13 12 11 15 15 C 1.38033 * 120.41216 * 0.02562 * 14 13 12 16 16 C 1.38828 * 120.07591 * 359.97438 * 15 14 13 17 17 O 1.35508 * 120.16614 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99887 * 354.39367 * 17 16 15 19 19 H 1.08006 * 119.99678 * 5.05189 * 18 17 16 20 20 C 1.38697 * 120.00204 * 185.05564 * 18 17 16 21 21 N 1.31510 * 120.00082 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99832 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47304 * 90.00173 * 22 20 18 24 24 H 1.48505 * 109.47356 * 210.00078 * 22 20 18 25 25 H 1.48505 * 109.47354 * 329.99895 * 22 20 18 26 26 N 1.35493 * 126.34772 * 270.23907 * 3 2 1 27 27 C 1.46493 * 126.98092 * 0.02562 * 26 3 2 28 28 H 1.09000 * 109.47356 * 59.99927 * 1 2 3 29 29 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47213 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47213 * 240.00090 * 2 1 3 32 32 H 1.08994 * 109.46956 * 119.99894 * 2 1 3 33 33 H 1.09000 * 109.46550 * 330.02746 * 7 6 5 34 34 H 1.08994 * 109.47538 * 210.02197 * 7 6 5 35 35 H 1.08006 * 120.04534 * 0.02562 * 12 11 9 36 36 H 1.07996 * 119.83796 * 180.02562 * 13 12 11 37 37 H 1.07992 * 119.79707 * 179.72082 * 14 13 12 38 38 H 1.07997 * 119.95846 * 179.97438 * 15 14 13 39 39 H 0.97004 * 120.00343 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47371 * 270.17713 * 27 26 3 41 41 H 1.09000 * 109.47414 * 30.17580 * 27 26 3 42 42 H 1.09001 * 109.47442 * 150.17342 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2896 2.1503 1.0513 5 7 2.7008 3.3116 0.6824 6 6 2.7239 3.3759 -0.6210 7 6 3.1436 4.5627 -1.4494 8 8 4.5691 4.4875 -1.7156 9 6 5.1075 5.4804 -2.4504 10 8 4.4052 6.3847 -2.8573 11 6 6.5484 5.4696 -2.7606 12 6 7.3599 4.4317 -2.2954 13 6 8.7064 4.4278 -2.5886 14 6 9.2612 5.4488 -3.3438 15 6 8.4722 6.4809 -3.8103 16 6 7.1137 6.5018 -3.5251 17 8 6.3376 7.5144 -3.9817 18 6 6.9637 8.5309 -4.6081 19 1 8.0253 8.4754 -4.7991 20 6 6.2446 9.6478 -5.0070 21 7 6.8555 10.6395 -5.6176 22 14 4.4085 9.7433 -4.6771 23 1 4.1756 10.3738 -3.3529 24 1 3.7572 10.5577 -5.7345 25 1 3.8328 8.3744 -4.6817 26 7 2.2955 2.1795 -1.0913 27 6 2.1495 1.7854 -2.4946 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9237 5.4814 -0.9056 34 1 2.5973 4.5591 -2.3925 35 1 6.9324 3.6333 -1.7068 36 1 9.3323 3.6247 -2.2287 37 1 10.3183 5.4395 -3.5645 38 1 8.9123 7.2730 -4.3978 39 1 6.3527 11.4209 -5.8963 40 1 3.0810 1.3420 -2.8464 41 1 1.3435 1.0573 -2.5856 42 1 1.9152 2.6637 -3.0963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137608035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:45 Heat of formation + Delta-G solvation = -3.077700 kcal Electronic energy + Delta-G solvation = -27627.341971 eV Core-core repulsion = 23575.377735 eV Total energy + Delta-G solvation = -4051.964236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.40464 -40.16506 -38.96328 -36.69165 -36.05028 -35.56268 -34.35684 -32.58713 -31.34448 -30.50656 -29.32402 -28.06483 -27.17969 -25.45817 -24.44847 -23.66469 -21.73395 -21.27376 -20.93332 -20.52792 -18.08372 -17.92758 -17.35225 -17.02332 -16.53479 -16.16975 -16.07819 -15.15604 -15.03917 -14.81227 -14.41964 -14.15011 -14.05608 -13.84840 -13.81964 -13.62011 -13.25993 -12.95857 -12.86217 -12.58641 -12.37353 -12.25897 -12.10123 -11.74581 -11.63209 -11.51708 -11.37056 -10.91321 -10.82122 -10.68095 -10.44983 -10.42827 -10.18388 -10.02765 -9.54318 -9.28810 -9.00457 -8.52311 -7.62271 -6.58994 -4.24427 1.34247 1.35312 2.10016 2.10914 2.49587 3.12810 3.17940 3.22631 3.29777 3.53369 3.89269 4.08347 4.22508 4.23118 4.34711 4.41809 4.58877 4.63374 4.68505 4.74662 4.93851 4.97183 4.97984 5.09972 5.22110 5.33101 5.35922 5.39864 5.59474 5.61115 5.65293 5.70415 5.84410 5.87790 5.95369 6.28185 6.46034 6.51236 6.62726 6.76459 6.96672 7.05535 7.37689 7.57759 7.82073 8.31454 8.51254 8.75041 9.35054 10.45658 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.003083 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.510393 B = 9078.610181 C =10398.363578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 C 0.179 3.821 4 N -0.291 5.291 5 N -0.266 5.266 6 C 0.175 3.825 7 C 0.158 3.842 8 O -0.358 6.358 9 C 0.509 3.491 10 O -0.490 6.490 11 C -0.216 4.216 12 C -0.017 4.017 13 C -0.225 4.225 14 C -0.041 4.041 15 C -0.228 4.228 16 C 0.204 3.796 17 O -0.165 6.165 18 C -0.397 4.397 19 H 0.111 0.889 20 C 0.073 3.927 21 N -0.863 5.863 22 Si 0.900 3.100 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.241 1.241 26 N -0.463 5.463 27 C 0.067 3.933 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.284 0.716 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 -20.766 4.797 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.088 4.088 4 N -0.132 5.132 5 N -0.109 5.109 6 C -0.092 4.092 7 C 0.081 3.919 8 O -0.276 6.276 9 C 0.356 3.644 10 O -0.378 6.378 11 C -0.219 4.219 12 C -0.035 4.035 13 C -0.244 4.244 14 C -0.060 4.060 15 C -0.247 4.247 16 C 0.146 3.854 17 O -0.065 6.065 18 C -0.471 4.471 19 H 0.128 0.872 20 C -0.134 4.134 21 N -0.498 5.498 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.164 1.164 26 N -0.154 5.154 27 C -0.076 4.076 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.802 -19.751 5.950 22.427 hybrid contribution -0.720 -0.021 -1.413 1.586 sum -9.522 -19.771 4.537 22.409 Atomic orbital electron populations 1.21764 0.93469 1.02685 1.02767 1.20022 0.96664 0.86139 1.04762 1.24875 1.03451 0.97627 0.82805 1.74300 1.16405 0.98704 1.23816 1.74296 1.15918 1.12889 1.07760 1.24160 1.04009 0.88657 0.92369 1.20743 0.80521 0.92874 0.97721 1.86584 1.23628 1.49562 1.67815 1.21101 0.88982 0.79029 0.75290 1.90933 1.62005 1.34947 1.49883 1.17954 0.89332 1.01339 1.13233 1.20955 0.93228 0.94948 0.94359 1.20619 0.94966 1.01651 1.07136 1.21053 0.98901 0.92441 0.93585 1.21243 0.93137 1.02338 1.07940 1.18955 0.89538 0.87399 0.89489 1.83739 1.34690 1.26421 1.61657 1.20951 0.96090 0.94374 1.35716 0.87171 1.24515 1.00833 0.93430 0.94581 1.69625 1.37712 1.06656 1.35845 0.86207 0.82672 0.80561 0.78104 1.19687 1.21017 1.16354 1.45976 1.48728 1.11678 1.09067 1.22214 1.04396 1.03294 0.77686 0.92767 0.91110 0.91593 0.89848 0.87994 0.87513 0.89453 0.85734 0.86684 0.86523 0.84085 0.90614 0.89265 0.88790 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.42 16 2 C -0.04 -0.23 6.11 -27.88 -0.17 -0.40 16 3 C 0.18 1.99 7.28 -154.98 -1.13 0.86 16 4 N -0.29 -4.39 12.21 32.80 0.40 -3.99 16 5 N -0.27 -4.41 12.21 32.80 0.40 -4.01 16 6 C 0.17 2.46 7.67 -154.99 -1.19 1.27 16 7 C 0.16 2.27 5.83 36.01 0.21 2.48 16 8 O -0.36 -6.05 9.46 -40.64 -0.38 -6.44 16 9 C 0.51 10.29 7.89 34.46 0.27 10.56 16 10 O -0.49 -11.41 14.96 -26.59 -0.40 -11.80 16 11 C -0.22 -4.38 5.89 -104.83 -0.62 -5.00 16 12 C -0.02 -0.28 9.61 -39.19 -0.38 -0.66 16 13 C -0.22 -3.50 10.02 -39.61 -0.40 -3.90 16 14 C -0.04 -0.68 10.03 -39.53 -0.40 -1.08 16 15 C -0.23 -4.62 9.16 -39.44 -0.36 -4.98 16 16 C 0.20 4.66 6.66 -38.58 -0.26 4.40 16 17 O -0.17 -4.36 6.67 -21.03 -0.14 -4.50 16 18 C -0.40 -10.91 9.95 30.90 0.31 -10.61 16 19 H 0.11 3.01 5.44 -52.48 -0.29 2.73 16 20 C 0.07 2.02 5.49 -17.52 -0.10 1.92 16 21 N -0.86 -24.29 13.96 55.48 0.77 -23.52 16 22 Si 0.90 22.21 28.62 -169.99 -4.86 17.34 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -6.15 7.11 56.52 0.40 -5.75 16 26 N -0.46 -5.01 3.15 -118.00 -0.37 -5.38 16 27 C 0.07 0.42 10.71 59.84 0.64 1.06 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.09 1.07 7.20 -51.93 -0.37 0.70 16 35 H 0.12 1.84 7.61 -52.48 -0.40 1.44 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.14 2.94 5.64 -52.49 -0.30 2.64 16 39 H 0.28 7.37 8.31 -40.82 -0.34 7.04 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.33 7.83 -51.93 -0.41 -0.08 16 42 H 0.09 0.56 7.19 -51.93 -0.37 0.18 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.41 366.80 -7.31 -41.71 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.06 Total: -0.47 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.19 Total: -4.48 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 1.20 Total: -36.89 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.92 Total: -22.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.41 -7.31 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137608035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.635 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds