Wall clock time and date at job start Tue Mar 31 2020 16:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46593 * 2 1 4 4 N 1.30525 * 126.34385 * 89.97836 * 3 2 1 5 5 N 1.28598 * 109.67023 * 179.97438 * 4 3 2 6 6 C 1.30516 * 109.67461 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34910 * 179.97438 * 6 5 4 8 8 O 1.45208 * 109.47242 * 90.01779 * 7 6 5 9 9 C 1.34756 * 116.99931 * 179.97438 * 8 7 6 10 10 O 1.21514 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.47396 * 119.99675 * 180.02562 * 9 8 7 12 12 C 1.39720 * 120.20659 * 0.02562 * 11 9 8 13 13 C 1.37802 * 119.91685 * 180.02562 * 12 11 9 14 14 C 1.38588 * 120.33214 * 359.97438 * 13 12 11 15 15 C 1.38033 * 120.41216 * 0.02562 * 14 13 12 16 16 C 1.38828 * 120.07591 * 359.97438 * 15 14 13 17 17 O 1.35508 * 120.16614 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99887 * 354.39367 * 17 16 15 19 19 H 1.08006 * 119.99678 * 5.05189 * 18 17 16 20 20 C 1.38697 * 120.00204 * 185.05564 * 18 17 16 21 21 N 1.31510 * 120.00082 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99832 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47304 * 90.00173 * 22 20 18 24 24 H 1.48505 * 109.47356 * 210.00078 * 22 20 18 25 25 H 1.48505 * 109.47354 * 329.99895 * 22 20 18 26 26 N 1.35493 * 126.34772 * 270.23907 * 3 2 1 27 27 C 1.46493 * 126.98092 * 0.02562 * 26 3 2 28 28 H 1.09000 * 109.47356 * 59.99927 * 1 2 3 29 29 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47213 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47213 * 240.00090 * 2 1 3 32 32 H 1.08994 * 109.46956 * 119.99894 * 2 1 3 33 33 H 1.09000 * 109.46550 * 330.02746 * 7 6 5 34 34 H 1.08994 * 109.47538 * 210.02197 * 7 6 5 35 35 H 1.08006 * 120.04534 * 0.02562 * 12 11 9 36 36 H 1.07996 * 119.83796 * 180.02562 * 13 12 11 37 37 H 1.07992 * 119.79707 * 179.72082 * 14 13 12 38 38 H 1.07997 * 119.95846 * 179.97438 * 15 14 13 39 39 H 0.97004 * 120.00343 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47371 * 270.17713 * 27 26 3 41 41 H 1.09000 * 109.47414 * 30.17580 * 27 26 3 42 42 H 1.09001 * 109.47442 * 150.17342 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2896 2.1503 1.0513 5 7 2.7008 3.3116 0.6824 6 6 2.7239 3.3759 -0.6210 7 6 3.1436 4.5627 -1.4494 8 8 4.5691 4.4875 -1.7156 9 6 5.1075 5.4804 -2.4504 10 8 4.4052 6.3847 -2.8573 11 6 6.5484 5.4696 -2.7606 12 6 7.3599 4.4317 -2.2954 13 6 8.7064 4.4278 -2.5886 14 6 9.2612 5.4488 -3.3438 15 6 8.4722 6.4809 -3.8103 16 6 7.1137 6.5018 -3.5251 17 8 6.3376 7.5144 -3.9817 18 6 6.9637 8.5309 -4.6081 19 1 8.0253 8.4754 -4.7991 20 6 6.2446 9.6478 -5.0070 21 7 6.8555 10.6395 -5.6176 22 14 4.4085 9.7433 -4.6771 23 1 4.1756 10.3738 -3.3529 24 1 3.7572 10.5577 -5.7345 25 1 3.8328 8.3744 -4.6817 26 7 2.2955 2.1795 -1.0913 27 6 2.1495 1.7854 -2.4946 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9237 5.4814 -0.9056 34 1 2.5973 4.5591 -2.3925 35 1 6.9324 3.6333 -1.7068 36 1 9.3323 3.6247 -2.2287 37 1 10.3183 5.4395 -3.5645 38 1 8.9123 7.2730 -4.3978 39 1 6.3527 11.4209 -5.8963 40 1 3.0810 1.3420 -2.8464 41 1 1.3435 1.0573 -2.5856 42 1 1.9152 2.6637 -3.0963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137608035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:44 Heat of formation + Delta-G solvation = -23.020265 kcal Electronic energy + Delta-G solvation = -27628.206746 eV Core-core repulsion = 23575.377735 eV Total energy + Delta-G solvation = -4052.829011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.35913 -41.73996 -40.58013 -38.30550 -37.57178 -36.37880 -35.07163 -34.56296 -32.66037 -31.64022 -30.89437 -28.79817 -28.21122 -27.33378 -25.20688 -25.02218 -23.29273 -22.33616 -22.01321 -21.72213 -19.93433 -19.51414 -18.64748 -18.20647 -17.70562 -17.38647 -17.36584 -16.59362 -16.17882 -15.97758 -15.76241 -15.70105 -15.50225 -15.21102 -14.71464 -14.52000 -14.39162 -14.32031 -14.11232 -13.93725 -13.57418 -13.49656 -13.18250 -12.90844 -12.80790 -12.63845 -12.49230 -12.44702 -12.16651 -12.04555 -11.98087 -11.74351 -11.44526 -11.30012 -11.23012 -10.99584 -10.34434 -10.01659 -9.25683 -8.60299 -6.30505 -0.17264 0.34659 0.58372 1.23061 1.25772 1.31174 1.48335 1.55514 1.59098 1.93903 2.26527 2.70155 2.87634 2.95137 3.07077 3.29828 3.55361 3.63649 3.79010 3.95170 4.00482 4.09980 4.20617 4.24665 4.30665 4.42724 4.46025 4.50899 4.51607 4.57777 4.73363 4.76578 4.94360 4.97736 5.00612 5.10223 5.13595 5.24004 5.30975 5.44645 5.55478 5.65960 5.74257 5.78897 6.07563 6.72556 6.77910 7.48451 7.51831 8.49423 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.003083 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.510393 B = 9078.610181 C =10398.363578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C 0.196 3.804 4 N -0.336 5.336 5 N -0.308 5.308 6 C 0.163 3.837 7 C 0.158 3.842 8 O -0.349 6.349 9 C 0.514 3.486 10 O -0.526 6.526 11 C -0.223 4.223 12 C -0.013 4.013 13 C -0.194 4.194 14 C -0.027 4.027 15 C -0.248 4.248 16 C 0.174 3.826 17 O -0.205 6.205 18 C -0.404 4.404 19 H 0.097 0.903 20 C 0.028 3.972 21 N -0.906 5.906 22 Si 0.952 3.048 23 H -0.277 1.277 24 H -0.265 1.265 25 H -0.259 1.259 26 N -0.457 5.457 27 C 0.055 3.945 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.125 0.875 39 H 0.287 0.713 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 -25.339 5.264 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.072 4.072 4 N -0.177 5.177 5 N -0.151 5.151 6 C -0.105 4.105 7 C 0.082 3.918 8 O -0.265 6.265 9 C 0.362 3.638 10 O -0.416 6.416 11 C -0.226 4.226 12 C -0.031 4.031 13 C -0.212 4.212 14 C -0.044 4.044 15 C -0.267 4.267 16 C 0.120 3.880 17 O -0.109 6.109 18 C -0.480 4.480 19 H 0.114 0.886 20 C -0.173 4.173 21 N -0.545 5.545 22 Si 0.775 3.225 23 H -0.202 1.202 24 H -0.190 1.190 25 H -0.183 1.183 26 N -0.147 5.147 27 C -0.086 4.086 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.146 0.854 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.524 -24.390 6.427 26.624 hybrid contribution -0.672 0.887 -1.341 1.742 sum -9.196 -23.502 5.087 25.745 Atomic orbital electron populations 1.21749 0.92484 1.04089 1.01966 1.20332 0.97295 0.83240 1.06618 1.25740 1.00817 0.98729 0.81939 1.74208 1.18615 0.98943 1.25912 1.74184 1.17343 1.14244 1.09324 1.23905 1.04957 0.89722 0.91876 1.20857 0.79086 0.93071 0.98745 1.86539 1.25347 1.47957 1.66677 1.21167 0.89031 0.78852 0.74764 1.90924 1.62909 1.36472 1.51299 1.18337 0.90051 1.01521 1.12702 1.21356 0.93704 0.94263 0.93732 1.21248 0.94652 1.01478 1.03792 1.21543 1.00538 0.90712 0.91655 1.21334 0.92712 1.03703 1.08955 1.19600 0.90841 0.87331 0.90200 1.83724 1.35231 1.27466 1.64480 1.20906 0.95689 0.95306 1.36116 0.88596 1.25063 1.03608 0.93509 0.95132 1.69671 1.38706 1.07557 1.38604 0.85465 0.79542 0.79386 0.78062 1.20241 1.18968 1.18317 1.46200 1.47460 1.10358 1.10726 1.22645 1.06428 1.04429 0.75082 0.92368 0.88577 0.93649 0.86587 0.87510 0.88560 0.87372 0.82872 0.81679 0.82411 0.85743 0.90296 0.88029 0.85351 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.04 -0.33 6.11 29.85 0.18 -0.15 16 3 C 0.20 3.95 7.28 137.98 1.01 4.96 16 4 N -0.34 -9.98 12.21 -50.15 -0.61 -10.59 16 5 N -0.31 -10.25 12.21 -50.15 -0.61 -10.87 16 6 C 0.16 4.47 7.67 137.98 1.06 5.53 16 7 C 0.16 4.49 5.83 71.24 0.42 4.91 16 8 O -0.35 -11.40 9.46 -56.67 -0.54 -11.93 16 9 C 0.51 20.70 7.89 70.23 0.55 21.25 16 10 O -0.53 -25.14 14.96 26.79 0.40 -24.74 16 11 C -0.22 -8.85 5.89 -20.00 -0.12 -8.97 16 12 C -0.01 -0.37 9.61 22.52 0.22 -0.16 16 13 C -0.19 -4.91 10.02 22.25 0.22 -4.69 16 14 C -0.03 -0.77 10.03 22.30 0.22 -0.55 16 15 C -0.25 -9.99 9.16 22.36 0.20 -9.78 16 16 C 0.17 8.07 6.66 22.92 0.15 8.22 16 17 O -0.21 -11.35 6.67 0.95 0.01 -11.35 16 18 C -0.40 -23.57 9.95 67.93 0.68 -22.90 16 19 H 0.10 5.63 5.44 -2.91 -0.02 5.61 16 20 C 0.03 1.63 5.49 84.85 0.47 2.10 16 21 N -0.91 -53.54 13.96 21.62 0.30 -53.24 16 22 Si 0.95 48.16 28.62 68.60 1.96 50.12 16 23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.26 -13.72 7.11 99.48 0.71 -13.01 16 26 N -0.46 -8.86 3.15 -527.25 -1.66 -10.52 16 27 C 0.05 0.50 10.71 127.77 1.37 1.87 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.37 7.87 -2.39 -0.02 0.36 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.11 2.58 7.20 -2.39 -0.02 2.57 16 35 H 0.15 3.75 7.61 -2.91 -0.02 3.73 16 36 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 39 H 0.29 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.13 0.29 7.83 -2.39 -0.02 0.27 16 42 H 0.10 0.88 7.19 -2.39 -0.02 0.86 16 Total: -1.00 -81.94 366.80 7.65 -74.29 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.06 Total: 7.57 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 7.34 Total: 1.27 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.58 Total: -85.22 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.13 Total: -48.02 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.96 Total: 50.12 kcal Total: -81.94 7.65 -74.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137608035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.269 kcal (2) G-P(sol) polarization free energy of solvation -81.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds