Wall clock time and date at job start Tue Mar 31 2020 16:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31130 * 126.55187 * 2 1 4 4 C 1.34497 * 105.61114 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.28286 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47260 * 90.00042 * 5 4 3 7 7 C 1.35909 * 116.99928 * 179.97438 * 6 5 4 8 8 C 1.38846 * 119.98607 * 359.72259 * 7 6 5 9 9 C 1.38252 * 120.23924 * 179.72543 * 8 7 6 10 10 C 1.38004 * 120.20334 * 0.55131 * 9 8 7 11 11 C 1.39568 * 119.96757 * 359.72596 * 10 9 8 12 12 C 1.47851 * 120.11506 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99702 * 140.74214 * 12 11 10 14 14 N 1.34771 * 120.00575 * 320.73671 * 12 11 10 15 15 C 1.46508 * 119.99767 * 4.85053 * 14 12 11 16 16 C 1.46498 * 120.00360 * 184.84933 * 14 12 11 17 17 C 1.50707 * 109.46910 * 90.00244 * 16 14 12 18 18 H 1.08000 * 119.99639 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99814 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99718 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99609 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47167 * 90.00007 * 21 19 17 23 23 H 1.48503 * 109.46641 * 209.99637 * 21 19 17 24 24 H 1.48496 * 109.47087 * 329.99456 * 21 19 17 25 25 C 1.38456 * 119.98472 * 180.02562 * 7 6 5 26 26 N 1.29947 * 107.42840 * 359.97438 * 4 3 2 27 27 O 1.21301 * 110.24751 * 359.70646 * 26 4 3 28 28 H 1.08997 * 109.46753 * 90.00354 * 1 2 3 29 29 H 1.08995 * 109.47676 * 210.00075 * 1 2 3 30 30 H 1.09001 * 109.47062 * 330.00673 * 1 2 3 31 31 H 1.09003 * 109.46877 * 209.99772 * 5 4 3 32 32 H 1.09002 * 109.47438 * 329.99718 * 5 4 3 33 33 H 1.07998 * 119.88311 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.89560 * 180.25380 * 9 8 7 35 35 H 1.08008 * 120.01218 * 179.74884 * 10 9 8 36 36 H 1.08997 * 109.46645 * 85.67348 * 15 14 12 37 37 H 1.08991 * 109.47138 * 205.67748 * 15 14 12 38 38 H 1.09002 * 109.46838 * 325.68108 * 15 14 12 39 39 H 1.09002 * 109.47220 * 209.99684 * 16 14 12 40 40 H 1.09000 * 109.47110 * 330.00456 * 16 14 12 41 41 H 0.97005 * 119.99168 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.10126 * 359.97148 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 0.0006 5 6 4.8112 1.3885 0.0014 6 8 5.2110 1.6462 1.3489 7 6 6.3441 2.3751 1.5276 8 6 7.0589 2.8277 0.4267 9 6 8.2091 3.5744 0.6024 10 6 8.6606 3.8653 1.8737 11 6 7.9518 3.4098 2.9864 12 6 8.4322 3.7201 4.3499 13 8 7.6369 4.0010 5.2252 14 7 9.7518 3.6913 4.6223 15 6 10.7171 3.4574 3.5454 16 6 10.2209 3.8938 5.9953 17 6 10.3031 2.5639 6.6994 18 1 10.0325 1.6585 6.1765 19 6 10.7227 2.5032 8.0114 20 7 11.0517 3.6059 8.6481 21 14 10.8239 0.8548 8.8842 22 1 12.1750 0.2714 8.6852 23 1 10.5769 1.0475 10.3359 24 1 9.8004 -0.0647 8.3257 25 6 6.7884 2.6608 2.8075 26 7 3.4645 -0.7243 0.0015 27 8 2.3029 -1.0736 0.0073 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 5.5987 0.8369 -0.5121 32 1 4.6352 2.3336 -0.5125 33 1 6.7126 2.5997 -0.5705 34 1 8.7586 3.9271 -0.2578 35 1 9.5617 4.4455 2.0074 36 1 10.9551 4.4035 3.0591 37 1 11.6266 3.0234 3.9606 38 1 10.2877 2.7715 2.8151 39 1 11.2074 4.3571 5.9776 40 1 9.5240 4.5431 6.5253 41 1 11.3473 3.5631 9.5710 42 1 6.2357 2.3056 3.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159547401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:24 Heat of formation + Delta-G solvation = 41.642613 kcal Electronic energy + Delta-G solvation = -26793.401492 eV Core-core repulsion = 22743.376474 eV Total energy + Delta-G solvation = -4050.025018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.07347 -40.47892 -39.14255 -37.19828 -36.24886 -34.92758 -34.11761 -32.67036 -31.21369 -30.53735 -29.44691 -28.39637 -27.64218 -26.06299 -24.33894 -23.83166 -22.48076 -22.40945 -21.56551 -19.52569 -18.62255 -18.02229 -17.70752 -16.54379 -16.47352 -16.39202 -16.14119 -15.68166 -15.27570 -15.11279 -14.54075 -14.36435 -14.07008 -13.97729 -13.74846 -13.57874 -13.17195 -12.93162 -12.76382 -12.58512 -12.43897 -12.18441 -12.15289 -11.99030 -11.56385 -11.38287 -11.29238 -11.16035 -11.00811 -10.88441 -10.56011 -10.40477 -10.16338 -9.64812 -9.13959 -8.90643 -8.43718 -8.30276 -7.68072 -6.04545 -4.09501 0.66221 1.02124 1.37594 1.54143 2.35652 2.76119 3.24240 3.31052 3.37314 3.38017 3.43022 3.55957 3.84305 4.07067 4.34317 4.45117 4.52792 4.66717 4.73716 4.75073 4.76594 4.92132 5.00440 5.06399 5.20197 5.29645 5.32948 5.37453 5.49478 5.50781 5.69778 5.86207 5.91893 6.12862 6.21092 6.29971 6.44498 6.53675 7.04605 7.17528 7.42722 7.50692 7.69030 7.91779 8.21919 8.34388 8.86749 9.02607 9.55585 11.03501 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.002364 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.368472 B =11842.477903 C =13076.080426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.180 3.820 3 N -0.469 5.469 4 C 0.168 3.832 5 C 0.156 3.844 6 O -0.308 6.308 7 C 0.121 3.879 8 C -0.197 4.197 9 C -0.088 4.088 10 C -0.131 4.131 11 C -0.072 4.072 12 C 0.546 3.454 13 O -0.532 6.532 14 N -0.592 5.592 15 C 0.077 3.923 16 C 0.244 3.756 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.096 4.096 26 N -0.359 5.359 27 O 0.087 5.913 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 -4.805 -24.489 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.040 4.040 3 N -0.204 5.204 4 C -0.104 4.104 5 C 0.079 3.921 6 O -0.221 6.221 7 C 0.076 3.924 8 C -0.216 4.216 9 C -0.106 4.106 10 C -0.149 4.149 11 C -0.076 4.076 12 C 0.332 3.668 13 O -0.410 6.410 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.125 3.875 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.115 4.115 26 N -0.065 5.065 27 O 0.023 5.977 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.945 -4.715 -23.656 28.375 hybrid contribution 0.096 -0.969 0.314 1.023 sum -14.849 -5.684 -23.341 28.242 Atomic orbital electron populations 1.20445 0.79806 1.06254 1.05562 1.28915 0.99061 0.80405 0.95633 1.71900 0.99960 1.28907 1.19623 1.25160 0.94566 0.88094 1.02614 1.20539 0.89083 0.98287 0.84157 1.86088 1.40307 1.69072 1.26627 1.18686 0.86169 0.93443 0.94080 1.21282 0.98574 1.04187 0.97521 1.20845 0.95360 0.97226 0.97148 1.21647 1.00516 1.01196 0.91553 1.20028 0.94827 0.98098 0.94626 1.18103 0.83122 0.78926 0.86670 1.90768 1.54377 1.48473 1.47393 1.48069 1.04513 1.68627 1.11117 1.21989 0.94196 0.99666 0.90833 1.19374 0.95407 0.97581 0.75152 1.21437 1.44893 0.93190 0.97208 0.92392 1.24938 0.95191 0.96865 0.97106 1.69936 1.44872 1.26854 1.11605 0.86482 0.78290 0.83766 0.78827 1.20606 1.21038 1.19854 1.20419 0.96160 0.99798 0.95132 1.74689 0.97557 1.15462 1.18805 1.85324 1.11314 1.35851 1.65162 0.87837 0.88155 0.87470 0.88917 0.88448 0.85440 0.85181 0.84258 0.93406 0.90605 0.91717 0.94673 0.93497 0.92678 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.18 1.42 8.51 -13.05 -0.11 1.31 16 3 N -0.47 -5.13 11.55 -9.87 -0.11 -5.25 16 4 C 0.17 1.97 7.85 -156.37 -1.23 0.75 16 5 C 0.16 1.62 5.36 36.00 0.19 1.82 16 6 O -0.31 -4.32 10.12 -19.46 -0.20 -4.52 16 7 C 0.12 1.71 6.68 -39.28 -0.26 1.45 16 8 C -0.20 -2.19 9.03 -39.35 -0.36 -2.55 16 9 C -0.09 -0.95 10.03 -39.66 -0.40 -1.35 16 10 C -0.13 -1.76 7.56 -39.17 -0.30 -2.06 16 11 C -0.07 -1.27 5.23 -104.99 -0.55 -1.82 16 12 C 0.55 12.17 7.35 -12.33 -0.09 12.08 16 13 O -0.53 -14.17 16.47 5.32 0.09 -14.08 16 14 N -0.59 -13.00 2.86 -184.07 -0.53 -13.52 16 15 C 0.08 1.25 8.88 59.85 0.53 1.78 16 16 C 0.24 6.48 5.18 -5.19 -0.03 6.46 16 17 C -0.53 -15.23 9.39 -34.44 -0.32 -15.56 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.10 -1.63 9.57 -39.02 -0.37 -2.00 16 26 N -0.36 -4.32 12.16 30.90 0.38 -3.94 16 27 O 0.09 0.84 11.31 18.10 0.20 1.05 16 28 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.78 7.64 -51.93 -0.40 0.38 16 32 H 0.10 0.81 7.67 -51.93 -0.40 0.41 16 33 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.67 5.31 -52.48 -0.28 1.39 16 36 H 0.05 0.63 6.90 -51.93 -0.36 0.28 16 37 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.06 0.93 5.81 -51.93 -0.30 0.63 16 39 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.05 1.40 7.36 -51.93 -0.38 1.02 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.14 2.56 8.05 -52.49 -0.42 2.14 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -37.50 364.92 -6.90 -44.40 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.94 Total: -2.96 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.01 Total: 2.20 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.47 Total: -48.76 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.10 Total: -17.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.50 -6.90 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159547401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.046 kcal (2) G-P(sol) polarization free energy of solvation -37.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds