Wall clock time and date at job start Tue Mar 31 2020 16:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31130 * 126.55187 * 2 1 4 4 C 1.34497 * 105.61114 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.28286 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47260 * 90.00042 * 5 4 3 7 7 C 1.35909 * 116.99928 * 179.97438 * 6 5 4 8 8 C 1.38846 * 119.98607 * 359.72259 * 7 6 5 9 9 C 1.38252 * 120.23924 * 179.72543 * 8 7 6 10 10 C 1.38004 * 120.20334 * 0.55131 * 9 8 7 11 11 C 1.39568 * 119.96757 * 359.72596 * 10 9 8 12 12 C 1.47851 * 120.11506 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99702 * 140.74214 * 12 11 10 14 14 N 1.34771 * 120.00575 * 320.73671 * 12 11 10 15 15 C 1.46508 * 119.99767 * 4.85053 * 14 12 11 16 16 C 1.46498 * 120.00360 * 184.84933 * 14 12 11 17 17 C 1.50707 * 109.46910 * 90.00244 * 16 14 12 18 18 H 1.08000 * 119.99639 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99814 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99718 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99609 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47167 * 90.00007 * 21 19 17 23 23 H 1.48503 * 109.46641 * 209.99637 * 21 19 17 24 24 H 1.48496 * 109.47087 * 329.99456 * 21 19 17 25 25 C 1.38456 * 119.98472 * 180.02562 * 7 6 5 26 26 N 1.29947 * 107.42840 * 359.97438 * 4 3 2 27 27 O 1.21301 * 110.24751 * 359.70646 * 26 4 3 28 28 H 1.08997 * 109.46753 * 90.00354 * 1 2 3 29 29 H 1.08995 * 109.47676 * 210.00075 * 1 2 3 30 30 H 1.09001 * 109.47062 * 330.00673 * 1 2 3 31 31 H 1.09003 * 109.46877 * 209.99772 * 5 4 3 32 32 H 1.09002 * 109.47438 * 329.99718 * 5 4 3 33 33 H 1.07998 * 119.88311 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.89560 * 180.25380 * 9 8 7 35 35 H 1.08008 * 120.01218 * 179.74884 * 10 9 8 36 36 H 1.08997 * 109.46645 * 85.67348 * 15 14 12 37 37 H 1.08991 * 109.47138 * 205.67748 * 15 14 12 38 38 H 1.09002 * 109.46838 * 325.68108 * 15 14 12 39 39 H 1.09002 * 109.47220 * 209.99684 * 16 14 12 40 40 H 1.09000 * 109.47110 * 330.00456 * 16 14 12 41 41 H 0.97005 * 119.99168 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.10126 * 359.97148 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 0.0006 5 6 4.8112 1.3885 0.0014 6 8 5.2110 1.6462 1.3489 7 6 6.3441 2.3751 1.5276 8 6 7.0589 2.8277 0.4267 9 6 8.2091 3.5744 0.6024 10 6 8.6606 3.8653 1.8737 11 6 7.9518 3.4098 2.9864 12 6 8.4322 3.7201 4.3499 13 8 7.6369 4.0010 5.2252 14 7 9.7518 3.6913 4.6223 15 6 10.7171 3.4574 3.5454 16 6 10.2209 3.8938 5.9953 17 6 10.3031 2.5639 6.6994 18 1 10.0325 1.6585 6.1765 19 6 10.7227 2.5032 8.0114 20 7 11.0517 3.6059 8.6481 21 14 10.8239 0.8548 8.8842 22 1 12.1750 0.2714 8.6852 23 1 10.5769 1.0475 10.3359 24 1 9.8004 -0.0647 8.3257 25 6 6.7884 2.6608 2.8075 26 7 3.4645 -0.7243 0.0015 27 8 2.3029 -1.0736 0.0073 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 5.5987 0.8369 -0.5121 32 1 4.6352 2.3336 -0.5125 33 1 6.7126 2.5997 -0.5705 34 1 8.7586 3.9271 -0.2578 35 1 9.5617 4.4455 2.0074 36 1 10.9551 4.4035 3.0591 37 1 11.6266 3.0234 3.9606 38 1 10.2877 2.7715 2.8151 39 1 11.2074 4.3571 5.9776 40 1 9.5240 4.5431 6.5253 41 1 11.3473 3.5631 9.5710 42 1 6.2357 2.3056 3.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159547401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:23 Heat of formation + Delta-G solvation = 13.540725 kcal Electronic energy + Delta-G solvation = -26794.620081 eV Core-core repulsion = 22743.376474 eV Total energy + Delta-G solvation = -4051.243607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.81909 -41.64212 -40.58302 -38.36788 -37.03616 -36.75423 -34.84723 -34.71210 -32.35627 -31.69350 -29.97406 -29.57465 -29.14542 -27.60401 -25.81092 -24.88904 -23.76981 -23.48665 -22.51879 -20.84833 -19.51438 -18.98832 -18.75991 -18.73930 -17.72056 -17.39687 -17.14491 -17.06102 -16.82584 -16.21958 -16.13594 -15.63703 -15.10092 -14.92959 -14.53311 -14.41567 -14.21134 -14.17781 -13.92939 -13.79954 -13.69364 -13.55560 -13.26001 -13.05672 -12.94253 -12.85202 -12.60398 -12.47328 -12.30650 -12.27220 -12.16806 -12.02633 -11.76177 -11.10191 -10.83476 -10.67870 -10.09490 -9.51212 -9.34732 -8.26866 -6.41938 -0.12914 -0.03682 0.33064 0.78911 1.33104 1.36557 1.46787 1.71177 1.79553 2.00936 2.25071 2.38410 2.67390 2.74246 2.85329 3.02513 3.53763 3.63834 3.79634 3.92361 4.02345 4.12521 4.15548 4.27388 4.40029 4.43093 4.46791 4.57480 4.64724 4.64994 4.79623 4.88077 4.91445 4.95655 5.11336 5.11924 5.18193 5.29876 5.34961 5.49199 5.58831 5.77497 6.00333 6.20214 6.60073 6.67264 6.98270 7.18564 7.33803 8.80388 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.002364 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.368472 B =11842.477903 C =13076.080426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.193 3.807 3 N -0.502 5.502 4 C 0.153 3.847 5 C 0.150 3.850 6 O -0.334 6.334 7 C 0.119 3.881 8 C -0.175 4.175 9 C -0.066 4.066 10 C -0.125 4.125 11 C -0.095 4.095 12 C 0.536 3.464 13 O -0.597 6.597 14 N -0.598 5.598 15 C 0.071 3.929 16 C 0.257 3.743 17 C -0.548 4.548 18 H 0.049 0.951 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.127 4.127 26 N -0.386 5.386 27 O 0.084 5.916 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.034 0.966 40 H 0.000 1.000 41 H 0.269 0.731 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 -5.745 -28.368 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 N -0.237 5.237 4 C -0.120 4.120 5 C 0.074 3.926 6 O -0.248 6.248 7 C 0.074 3.926 8 C -0.194 4.194 9 C -0.084 4.084 10 C -0.143 4.143 11 C -0.099 4.099 12 C 0.326 3.674 13 O -0.479 6.479 14 N -0.327 5.327 15 C -0.070 4.070 16 C 0.136 3.864 17 C -0.586 4.586 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.147 4.147 26 N -0.094 5.094 27 O 0.021 5.979 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.189 0.811 34 H 0.200 0.800 35 H 0.175 0.825 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.018 0.982 41 H 0.078 0.922 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.774 -5.661 -27.589 31.804 hybrid contribution -0.090 -0.674 1.411 1.566 sum -14.864 -6.335 -26.178 30.763 Atomic orbital electron populations 1.20836 0.75997 1.07578 1.07585 1.29962 1.00606 0.79245 0.92798 1.71912 1.00159 1.30151 1.21450 1.25502 0.95420 0.88285 1.02756 1.20903 0.89356 0.99667 0.82627 1.86044 1.40378 1.69117 1.29269 1.18647 0.86618 0.93600 0.93690 1.21801 0.97510 1.01811 0.98253 1.21394 0.94700 0.95028 0.97258 1.21864 1.00569 1.00589 0.91305 1.19585 0.96355 1.01109 0.92810 1.18963 0.82593 0.77485 0.88400 1.90707 1.55914 1.51295 1.50032 1.48072 1.05723 1.68275 1.10667 1.22335 0.92683 1.02355 0.89626 1.18869 0.93892 0.95947 0.77681 1.21671 1.45288 0.93593 0.98071 0.93232 1.25858 0.94533 1.00865 0.97785 1.70045 1.45236 1.29029 1.12103 0.85405 0.78988 0.78843 0.77510 1.18402 1.20317 1.20239 1.20226 0.96781 1.01905 0.95825 1.74659 0.98784 1.15902 1.20030 1.85281 1.11001 1.36320 1.65303 0.85174 0.85905 0.86920 0.86653 0.86089 0.81051 0.79997 0.82465 0.89549 0.91028 0.89315 0.94812 0.98172 0.92228 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 71.24 0.75 0.60 16 2 C 0.19 2.83 8.51 88.38 0.75 3.58 16 3 N -0.50 -10.60 11.55 -303.20 -3.50 -14.11 16 4 C 0.15 3.47 7.85 138.46 1.09 4.56 16 5 C 0.15 2.83 5.36 71.24 0.38 3.21 16 6 O -0.33 -9.29 10.12 -92.53 -0.94 -10.22 16 7 C 0.12 3.25 6.68 22.47 0.15 3.40 16 8 C -0.18 -3.12 9.03 22.42 0.20 -2.92 16 9 C -0.07 -1.08 10.03 22.22 0.22 -0.85 16 10 C -0.12 -3.01 7.56 22.54 0.17 -2.84 16 11 C -0.10 -3.41 5.23 -20.10 -0.11 -3.51 16 12 C 0.54 25.42 7.35 86.79 0.64 26.06 16 13 O -0.60 -34.79 16.47 -3.89 -0.06 -34.86 16 14 N -0.60 -27.24 2.86 -854.55 -2.44 -29.68 16 15 C 0.07 2.22 8.88 127.77 1.13 3.36 16 16 C 0.26 14.48 5.18 85.64 0.44 14.92 16 17 C -0.55 -32.91 9.39 25.60 0.24 -32.67 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 19 C 0.01 0.53 5.46 84.66 0.46 0.99 16 20 N -0.92 -57.03 13.29 21.45 0.28 -56.74 16 21 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 C -0.13 -4.58 9.57 22.63 0.22 -4.36 16 26 N -0.39 -9.14 12.16 -60.33 -0.73 -9.87 16 27 O 0.08 1.57 11.31 74.82 0.85 2.41 16 28 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.12 1.58 7.64 -2.39 -0.02 1.56 16 32 H 0.12 1.63 7.67 -2.39 -0.02 1.61 16 33 H 0.17 1.58 6.28 -2.91 -0.02 1.56 16 34 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 3.16 5.31 -2.91 -0.02 3.14 16 36 H 0.09 2.03 6.90 -2.39 -0.02 2.02 16 37 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 38 H 0.09 2.35 5.81 -2.39 -0.01 2.33 16 39 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 40 H 0.00 0.01 7.36 -2.39 -0.02 -0.01 16 41 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 42 H 0.10 4.26 8.05 -2.91 -0.02 4.24 16 Total: -1.00 -90.97 364.92 3.29 -87.68 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.07 Total: 3.46 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.74 Total: 13.54 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -6.39 Total: -110.40 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.15 Total: -42.67 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -90.97 3.29 -87.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159547401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.222 kcal (2) G-P(sol) polarization free energy of solvation -90.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds