Wall clock time and date at job start Tue Mar 31 2020 16:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.37096 * 119.99613 * 2 1 4 4 H 1.07996 * 119.99665 * 202.40475 * 3 2 1 5 5 C 1.38946 * 120.00324 * 22.40473 * 3 2 1 6 6 N 1.31414 * 119.99851 * 11.60714 * 5 3 2 7 7 Si 1.86804 * 120.00144 * 191.60602 * 5 3 2 8 8 H 1.48502 * 109.46795 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47007 * 120.00282 * 7 5 3 10 10 H 1.48501 * 109.46921 * 240.00318 * 7 5 3 11 11 C 1.34766 * 119.99922 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00187 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00285 * 359.97438 * 11 2 1 14 14 N 1.46506 * 109.47179 * 180.02562 * 13 11 2 15 15 C 1.33791 * 124.17386 * 269.95607 * 14 13 11 16 16 O 1.21534 * 123.77325 * 0.06454 * 15 14 13 17 17 N 1.34529 * 112.45322 * 180.02562 * 15 14 13 18 18 C 1.47310 * 106.62113 * 0.02562 * 17 15 14 19 19 C 1.53000 * 110.59724 * 241.47243 * 18 17 15 20 20 C 1.50697 * 110.60046 * 118.52758 * 18 17 15 21 21 C 1.38243 * 119.99828 * 215.55551 * 20 18 17 22 22 C 1.38228 * 119.99782 * 179.80790 * 21 20 18 23 23 C 1.38238 * 120.00043 * 0.41950 * 22 21 20 24 24 C 1.38229 * 119.99993 * 359.80705 * 23 22 21 25 25 C 1.38234 * 120.00417 * 0.02562 * 24 23 22 26 26 C 1.34764 * 124.17590 * 90.00142 * 14 13 11 27 27 O 1.21228 * 127.16151 * 359.92927 * 26 14 13 28 28 H 1.08997 * 109.46837 * 272.15628 * 1 2 3 29 29 H 1.08998 * 109.47180 * 32.16045 * 1 2 3 30 30 H 1.09000 * 109.47116 * 152.15647 * 1 2 3 31 31 H 0.96999 * 120.00070 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47119 * 60.00154 * 13 11 2 33 33 H 1.09003 * 109.47147 * 300.00301 * 13 11 2 34 34 H 0.97002 * 126.68648 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.47277 * 174.86972 * 19 18 17 36 36 H 1.08998 * 109.47166 * 294.87302 * 19 18 17 37 37 H 1.09002 * 109.47340 * 54.87267 * 19 18 17 38 38 H 1.08000 * 119.99595 * 359.97438 * 21 20 18 39 39 H 1.07998 * 120.00111 * 180.20217 * 22 21 20 40 40 H 1.08004 * 120.00133 * 179.79234 * 23 22 21 41 41 H 1.08003 * 120.00149 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00369 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4586 6 7 0.3897 2.2707 1.0997 7 14 2.3334 4.0079 0.1640 8 1 3.6074 3.8207 -0.5757 9 1 1.4185 4.8621 -0.6350 10 1 2.6092 4.6625 1.4681 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3375 -3.5858 -0.0005 15 6 2.8252 -4.1576 -1.1074 16 8 2.5289 -3.8106 -2.2338 17 7 3.6810 -5.1590 -0.8341 18 6 3.7628 -5.2546 0.6336 19 6 5.1921 -4.9902 1.1113 20 6 3.2861 -6.6044 1.1044 21 6 2.5924 -6.7158 2.2950 22 6 2.1517 -7.9534 2.7249 23 6 2.4122 -9.0808 1.9686 24 6 3.1099 -8.9701 0.7805 25 6 3.5476 -7.7320 0.3487 26 6 2.8294 -4.1612 1.1144 27 8 2.5782 -3.8656 2.2629 28 1 -0.3633 0.0387 1.0269 29 1 -0.3633 0.8700 -0.5470 30 1 -0.3633 -0.9087 -0.4800 31 1 -0.0403 3.0789 1.4202 32 1 0.7585 -2.5298 -0.8903 33 1 0.7591 -2.5302 0.8897 34 1 4.1522 -5.7105 -1.4781 35 1 5.2140 -4.9751 2.2010 36 1 5.8492 -5.7790 0.7455 37 1 5.5312 -4.0278 0.7279 38 1 2.3925 -5.8354 2.8878 39 1 1.6069 -8.0400 3.6534 40 1 2.0707 -10.0483 2.3062 41 1 3.3137 -9.8510 0.1898 42 1 4.0931 -7.6455 -0.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:41 Heat of formation + Delta-G solvation = -25.683283 kcal Electronic energy + Delta-G solvation = -28839.335666 eV Core-core repulsion = 24786.391178 eV Total energy + Delta-G solvation = -4052.944488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.54643 -39.46694 -38.44984 -38.28228 -36.25474 -35.13514 -34.40742 -31.89211 -31.61531 -31.13328 -29.54116 -28.52971 -26.21174 -24.97759 -24.21806 -23.08240 -22.94199 -21.47597 -20.48692 -19.01325 -17.99815 -17.45654 -16.99054 -16.70631 -16.31071 -15.68390 -15.63937 -15.25459 -15.17886 -14.66396 -14.57572 -14.23303 -14.18452 -14.05188 -13.79371 -13.60886 -13.25872 -12.71297 -12.61096 -12.42099 -12.35681 -12.26333 -11.59973 -11.55094 -11.37292 -11.27884 -11.23414 -10.92331 -10.65217 -10.32830 -10.28357 -10.01758 -9.84234 -9.54679 -9.17543 -9.06290 -9.05623 -8.38758 -7.72943 -6.33549 -3.90152 0.98367 1.14446 1.77889 2.30764 3.08501 3.14531 3.23503 3.26021 3.33282 3.54773 3.77727 3.90664 4.13093 4.16674 4.66583 4.68097 4.78631 4.83545 4.90547 5.06269 5.21321 5.23548 5.31466 5.41375 5.48089 5.56207 5.65017 5.69196 5.72913 5.81898 5.89197 5.93307 6.17616 6.25740 6.26722 6.27879 6.69865 6.80324 6.84302 7.18970 7.22711 7.51940 7.55304 8.06601 8.27775 8.44461 9.14067 9.36330 9.89236 10.69971 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.003070 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.375569 B = 9118.008946 C = 9358.628501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.439 5.439 3 C -0.304 4.304 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.881 5.881 7 Si 0.928 3.072 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.433 3.567 12 O -0.582 6.582 13 C 0.106 3.894 14 N -0.550 5.550 15 C 0.713 3.287 16 O -0.538 6.538 17 N -0.721 5.721 18 C 0.167 3.833 19 C -0.143 4.143 20 C -0.089 4.089 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.098 4.098 26 C 0.542 3.458 27 O -0.460 6.460 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.436 0.564 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -21.498 1.077 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.157 5.157 3 C -0.432 4.432 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.520 5.520 7 Si 0.755 3.245 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.219 3.781 12 O -0.467 6.467 13 C -0.018 4.018 14 N -0.294 5.294 15 C 0.414 3.586 16 O -0.411 6.411 17 N -0.386 5.386 18 C 0.076 3.924 19 C -0.201 4.201 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.116 4.116 26 C 0.328 3.672 27 O -0.329 6.329 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.280 0.720 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.334 -20.862 1.180 21.025 hybrid contribution 0.315 0.707 -0.343 0.846 sum 2.649 -20.155 0.837 20.346 Atomic orbital electron populations 1.21602 0.80874 0.99110 1.02033 1.43530 1.05636 1.04499 1.62081 1.19708 0.99580 0.83505 1.40369 0.88263 1.25360 0.96507 1.00131 0.95247 1.70001 1.17305 1.29305 1.35422 0.85828 0.79293 0.81224 0.78164 1.19208 1.20588 1.20685 1.19998 0.88371 0.84726 0.85015 1.90521 1.13593 1.86677 1.55883 1.21572 0.90288 0.84532 1.05427 1.45783 1.43253 1.32627 1.07713 1.15717 0.79046 0.79573 0.84280 1.90992 1.63165 1.66481 1.20446 1.45540 1.48855 1.37698 1.06506 1.20110 0.97950 0.92665 0.81676 1.22006 0.91046 1.03863 1.03182 1.19450 1.00631 0.92591 0.96402 1.21496 0.96270 0.99250 0.95647 1.21177 0.99842 0.92242 1.00076 1.21244 0.98363 0.98691 0.95002 1.21102 0.98800 0.97213 0.96783 1.20821 0.99757 0.91814 0.99221 1.20416 0.79777 0.81955 0.85066 1.90734 1.59381 1.64991 1.17823 0.91962 0.90827 0.95512 0.92205 0.87104 0.87067 0.71995 0.89726 0.90370 0.90165 0.83968 0.85574 0.85908 0.85745 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.52 59.85 0.51 2.91 16 2 N -0.44 -11.48 3.02 -122.19 -0.37 -11.85 16 3 C -0.30 -8.62 9.29 -14.94 -0.14 -8.76 16 4 H 0.10 2.97 7.41 -52.49 -0.39 2.58 16 5 C 0.03 0.82 5.11 -17.47 -0.09 0.73 16 6 N -0.88 -23.49 10.62 55.50 0.59 -22.90 16 7 Si 0.93 21.01 29.57 -169.99 -5.03 15.98 16 8 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.43 10.93 7.70 -10.99 -0.08 10.85 16 12 O -0.58 -16.62 16.12 5.55 0.09 -16.53 16 13 C 0.11 2.10 4.70 -5.19 -0.02 2.07 16 14 N -0.55 -10.21 2.09 -122.02 -0.26 -10.47 16 15 C 0.71 12.67 8.62 -88.02 -0.76 11.91 16 16 O -0.54 -11.16 17.48 5.34 0.09 -11.07 16 17 N -0.72 -9.29 5.36 -54.02 -0.29 -9.58 16 18 C 0.17 2.15 1.16 -133.25 -0.15 1.99 16 19 C -0.14 -1.61 8.97 37.16 0.33 -1.28 16 20 C -0.09 -0.99 4.89 -104.62 -0.51 -1.50 16 21 C -0.11 -1.23 9.18 -39.58 -0.36 -1.60 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 25 C -0.10 -0.87 9.35 -39.58 -0.37 -1.24 16 26 C 0.54 9.26 6.46 -10.56 -0.07 9.19 16 27 O -0.46 -8.62 15.62 5.60 0.09 -8.54 16 28 H 0.06 1.42 7.54 -51.93 -0.39 1.03 16 29 H 0.07 1.72 7.06 -51.93 -0.37 1.35 16 30 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.11 1.98 7.12 -51.93 -0.37 1.61 16 33 H 0.11 1.98 7.97 -51.93 -0.41 1.57 16 34 H 0.44 4.14 8.19 -40.82 -0.33 3.80 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.14 1.82 5.63 -52.49 -0.30 1.52 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.12 0.83 7.11 -52.49 -0.37 0.46 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -35.36 356.60 -7.56 -42.92 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.94 Total: 5.52 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: -2.91 Total: 21.13 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.32 Total: -54.79 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: 0.27 Total: -36.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.36 -7.56 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.236 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds