Wall clock time and date at job start Tue Mar 31 2020 16:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.37096 * 119.99613 * 2 1 4 4 H 1.07996 * 119.99665 * 202.40475 * 3 2 1 5 5 C 1.38946 * 120.00324 * 22.40473 * 3 2 1 6 6 N 1.31414 * 119.99851 * 11.60714 * 5 3 2 7 7 Si 1.86804 * 120.00144 * 191.60602 * 5 3 2 8 8 H 1.48502 * 109.46795 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47007 * 120.00282 * 7 5 3 10 10 H 1.48501 * 109.46921 * 240.00318 * 7 5 3 11 11 C 1.34766 * 119.99922 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00187 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00285 * 359.97438 * 11 2 1 14 14 N 1.46506 * 109.47179 * 180.02562 * 13 11 2 15 15 C 1.33791 * 124.17386 * 269.95607 * 14 13 11 16 16 O 1.21534 * 123.77325 * 0.06454 * 15 14 13 17 17 N 1.34529 * 112.45322 * 180.02562 * 15 14 13 18 18 C 1.47310 * 106.62113 * 0.02562 * 17 15 14 19 19 C 1.53000 * 110.59724 * 241.47243 * 18 17 15 20 20 C 1.50697 * 110.60046 * 118.52758 * 18 17 15 21 21 C 1.38243 * 119.99828 * 215.55551 * 20 18 17 22 22 C 1.38228 * 119.99782 * 179.80790 * 21 20 18 23 23 C 1.38238 * 120.00043 * 0.41950 * 22 21 20 24 24 C 1.38229 * 119.99993 * 359.80705 * 23 22 21 25 25 C 1.38234 * 120.00417 * 0.02562 * 24 23 22 26 26 C 1.34764 * 124.17590 * 90.00142 * 14 13 11 27 27 O 1.21228 * 127.16151 * 359.92927 * 26 14 13 28 28 H 1.08997 * 109.46837 * 272.15628 * 1 2 3 29 29 H 1.08998 * 109.47180 * 32.16045 * 1 2 3 30 30 H 1.09000 * 109.47116 * 152.15647 * 1 2 3 31 31 H 0.96999 * 120.00070 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47119 * 60.00154 * 13 11 2 33 33 H 1.09003 * 109.47147 * 300.00301 * 13 11 2 34 34 H 0.97002 * 126.68648 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.47277 * 174.86972 * 19 18 17 36 36 H 1.08998 * 109.47166 * 294.87302 * 19 18 17 37 37 H 1.09002 * 109.47340 * 54.87267 * 19 18 17 38 38 H 1.08000 * 119.99595 * 359.97438 * 21 20 18 39 39 H 1.07998 * 120.00111 * 180.20217 * 22 21 20 40 40 H 1.08004 * 120.00133 * 179.79234 * 23 22 21 41 41 H 1.08003 * 120.00149 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00369 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4586 6 7 0.3897 2.2707 1.0997 7 14 2.3334 4.0079 0.1640 8 1 3.6074 3.8207 -0.5757 9 1 1.4185 4.8621 -0.6350 10 1 2.6092 4.6625 1.4681 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3375 -3.5858 -0.0005 15 6 2.8252 -4.1576 -1.1074 16 8 2.5289 -3.8106 -2.2338 17 7 3.6810 -5.1590 -0.8341 18 6 3.7628 -5.2546 0.6336 19 6 5.1921 -4.9902 1.1113 20 6 3.2861 -6.6044 1.1044 21 6 2.5924 -6.7158 2.2950 22 6 2.1517 -7.9534 2.7249 23 6 2.4122 -9.0808 1.9686 24 6 3.1099 -8.9701 0.7805 25 6 3.5476 -7.7320 0.3487 26 6 2.8294 -4.1612 1.1144 27 8 2.5782 -3.8656 2.2629 28 1 -0.3633 0.0387 1.0269 29 1 -0.3633 0.8700 -0.5470 30 1 -0.3633 -0.9087 -0.4800 31 1 -0.0403 3.0789 1.4202 32 1 0.7585 -2.5298 -0.8903 33 1 0.7591 -2.5302 0.8897 34 1 4.1522 -5.7105 -1.4781 35 1 5.2140 -4.9751 2.2010 36 1 5.8492 -5.7790 0.7455 37 1 5.5312 -4.0278 0.7279 38 1 2.3925 -5.8354 2.8878 39 1 1.6069 -8.0400 3.6534 40 1 2.0707 -10.0483 2.3062 41 1 3.3137 -9.8510 0.1898 42 1 4.0931 -7.6455 -0.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:40 Heat of formation + Delta-G solvation = -49.794642 kcal Electronic energy + Delta-G solvation = -28840.381213 eV Core-core repulsion = 24786.391178 eV Total energy + Delta-G solvation = -4053.990035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.83237 -40.58374 -40.13051 -39.61050 -37.53536 -36.90598 -36.06437 -33.77116 -32.78681 -31.83664 -30.40289 -30.15276 -28.09848 -26.46631 -25.80250 -24.18544 -23.79248 -22.65808 -21.65770 -20.68811 -19.22926 -19.06823 -18.65460 -18.20251 -17.42528 -17.22896 -16.81788 -16.68576 -16.54172 -16.15940 -16.12261 -15.63041 -15.56794 -15.25997 -15.08281 -14.55256 -14.31435 -14.14902 -14.00401 -13.57753 -13.53234 -13.45826 -13.20737 -13.13988 -13.12681 -12.70832 -12.44035 -12.34381 -12.16859 -12.13335 -11.93799 -11.50729 -11.21457 -11.08174 -10.71697 -10.32198 -9.85640 -9.79346 -9.78260 -8.38649 -6.05056 0.24434 0.44460 0.49392 0.97425 1.32179 1.38678 1.52808 1.82470 1.85497 2.01171 2.25047 2.68241 2.84105 2.97796 3.02379 3.24112 3.68127 3.80765 3.86239 4.03484 4.06464 4.14520 4.24739 4.29896 4.41592 4.52798 4.55939 4.59237 4.60437 4.71555 4.95034 4.99066 5.02354 5.13871 5.33220 5.39468 5.50371 5.53250 5.60510 5.69296 5.90802 5.99093 6.04715 6.21396 6.38851 6.97517 7.07559 7.33952 7.87300 8.63043 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.003070 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.375569 B = 9118.008946 C = 9358.628501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.453 5.453 3 C -0.346 4.346 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.891 5.891 7 Si 0.992 3.008 8 H -0.276 1.276 9 H -0.262 1.262 10 H -0.273 1.273 11 C 0.420 3.580 12 O -0.626 6.626 13 C 0.115 3.885 14 N -0.561 5.561 15 C 0.707 3.293 16 O -0.574 6.574 17 N -0.694 5.694 18 C 0.179 3.821 19 C -0.141 4.141 20 C -0.103 4.103 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.098 4.098 26 C 0.529 3.471 27 O -0.485 6.485 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.276 0.724 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.453 0.547 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -23.893 0.783 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.171 5.171 3 C -0.474 4.474 4 H 0.087 0.913 5 C -0.202 4.202 6 N -0.529 5.529 7 Si 0.815 3.185 8 H -0.201 1.201 9 H -0.187 1.187 10 H -0.199 1.199 11 C 0.208 3.792 12 O -0.514 6.514 13 C -0.010 4.010 14 N -0.305 5.305 15 C 0.408 3.592 16 O -0.450 6.450 17 N -0.360 5.360 18 C 0.089 3.911 19 C -0.198 4.198 20 C -0.104 4.104 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.116 4.116 26 C 0.317 3.683 27 O -0.356 6.356 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.302 0.698 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.231 -23.307 0.900 23.430 hybrid contribution 0.323 1.385 -0.174 1.432 sum 2.554 -21.922 0.726 22.082 Atomic orbital electron populations 1.21596 0.78778 1.00674 1.01765 1.43801 1.07073 1.04349 1.61902 1.19627 0.99275 0.85529 1.42939 0.91275 1.26115 0.96980 1.02856 0.94240 1.70062 1.17644 1.30620 1.34610 0.84904 0.78285 0.76964 0.78320 1.20067 1.18661 1.19862 1.20922 0.88306 0.86286 0.83684 1.90471 1.15692 1.87671 1.57556 1.21437 0.90189 0.82193 1.07155 1.45948 1.43494 1.32346 1.08732 1.15898 0.79544 0.80255 0.83533 1.90960 1.64666 1.67827 1.21523 1.45402 1.47230 1.36248 1.07119 1.20119 0.97628 0.92393 0.80969 1.22050 0.90541 1.03974 1.03280 1.19300 1.02173 0.91881 0.97049 1.21417 0.97852 0.99479 0.96129 1.21380 0.99830 0.91900 1.00917 1.21620 0.97316 0.99294 0.94656 1.21502 0.97538 0.97740 0.96752 1.21090 0.99547 0.91363 0.99589 1.21230 0.79911 0.82615 0.84494 1.90709 1.60242 1.65957 1.18671 0.92801 0.92192 0.91183 0.91422 0.85087 0.85303 0.69841 0.89663 0.86499 0.92535 0.86358 0.84318 0.83152 0.82719 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.13 8.52 127.77 1.09 6.22 16 2 N -0.45 -24.43 3.02 -658.89 -1.99 -26.41 16 3 C -0.35 -20.40 9.29 84.04 0.78 -19.62 16 4 H 0.07 4.39 7.41 -2.91 -0.02 4.37 16 5 C 0.00 0.03 5.11 84.93 0.43 0.46 16 6 N -0.89 -47.59 10.62 21.66 0.23 -47.36 16 7 Si 0.99 43.40 29.57 68.60 2.03 45.43 16 8 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 9 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 C 0.42 21.98 7.70 87.66 0.67 22.66 16 12 O -0.63 -37.55 16.12 -3.06 -0.05 -37.60 16 13 C 0.12 4.60 4.70 85.63 0.40 5.01 16 14 N -0.56 -21.20 2.09 -777.21 -1.63 -22.82 16 15 C 0.71 25.15 8.62 179.44 1.55 26.69 16 16 O -0.57 -23.97 17.48 -3.82 -0.07 -24.03 16 17 N -0.69 -17.11 5.36 -443.26 -2.38 -19.48 16 18 C 0.18 4.50 1.16 2.24 0.00 4.50 16 19 C -0.14 -3.06 8.97 71.98 0.65 -2.42 16 20 C -0.10 -2.12 4.89 -19.86 -0.10 -2.22 16 21 C -0.13 -2.90 9.18 22.27 0.20 -2.69 16 22 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.11 -1.39 10.05 22.27 0.22 -1.16 16 24 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 25 C -0.10 -1.42 9.35 22.27 0.21 -1.21 16 26 C 0.53 18.51 6.46 87.94 0.57 19.07 16 27 O -0.48 -18.96 15.62 -2.87 -0.04 -19.01 16 28 H 0.05 2.48 7.54 -2.39 -0.02 2.46 16 29 H 0.06 2.81 7.06 -2.39 -0.02 2.80 16 30 H 0.07 2.47 6.36 -2.39 -0.02 2.46 16 31 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 32 H 0.13 4.64 7.12 -2.39 -0.02 4.62 16 33 H 0.13 4.62 7.97 -2.39 -0.02 4.60 16 34 H 0.45 7.61 8.19 -92.71 -0.76 6.85 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 3.17 5.63 -2.91 -0.02 3.15 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.14 1.37 7.11 -2.91 -0.02 1.34 16 Total: -1.00 -80.81 356.60 3.55 -77.26 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.32 Total: 21.71 kcal Atomic # 6 Polarization: 45.19 SS G_CDS: 7.13 Total: 52.33 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -5.76 Total: -116.08 kcal Atomic # 8 Polarization: -80.48 SS G_CDS: -0.16 Total: -80.64 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -80.81 3.55 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.466 kcal (2) G-P(sol) polarization free energy of solvation -80.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds