Wall clock time and date at job start Tue Mar 31 2020 16:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00516 * 2 1 4 4 O 1.20830 * 119.99632 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00426 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47267 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99658 * 263.98876 * 6 5 3 8 8 H 1.08003 * 119.99501 * 197.00700 * 7 6 5 9 9 C 1.38946 * 120.00338 * 17.01225 * 7 6 5 10 10 N 1.31407 * 119.99961 * 21.24812 * 9 7 6 11 11 Si 1.86797 * 120.00147 * 201.25775 * 9 7 6 12 12 H 1.48495 * 109.47408 * 59.99140 * 11 9 7 13 13 H 1.48495 * 109.47489 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46773 * 299.99536 * 11 9 7 15 15 C 1.34773 * 120.00075 * 83.99146 * 6 5 3 16 16 O 1.21293 * 119.99688 * 359.97438 * 15 6 5 17 17 C 1.50692 * 119.99972 * 180.02562 * 15 6 5 18 18 N 1.46505 * 109.47362 * 179.97438 * 17 15 6 19 19 C 1.36027 * 126.35174 * 270.04304 * 18 17 15 20 20 C 1.50704 * 124.95271 * 359.97438 * 19 18 17 21 21 N 1.30107 * 110.10144 * 179.97438 * 19 18 17 22 22 C 1.35786 * 109.64248 * 0.02562 * 21 19 18 23 23 C 1.39741 * 133.59754 * 179.97438 * 22 21 19 24 24 C 1.36606 * 119.88276 * 179.97438 * 23 22 21 25 25 C 1.38784 * 120.66799 * 0.02562 * 24 23 22 26 26 C 1.37849 * 120.45400 * 359.97438 * 25 24 23 27 27 C 1.38055 * 126.34477 * 89.99674 * 18 17 15 28 28 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46847 * 300.00617 * 1 2 3 30 30 H 1.09001 * 109.47003 * 60.00411 * 1 2 3 31 31 H 1.09002 * 109.47002 * 59.99409 * 5 3 2 32 32 H 1.08998 * 109.47143 * 299.99727 * 5 3 2 33 33 H 0.97007 * 120.00281 * 180.02562 * 10 9 7 34 34 H 1.09008 * 109.47085 * 59.99762 * 17 15 6 35 35 H 1.09004 * 109.47410 * 299.99917 * 17 15 6 36 36 H 1.09004 * 109.47084 * 89.99427 * 20 19 18 37 37 H 1.08997 * 109.46987 * 209.99773 * 20 19 18 38 38 H 1.09006 * 109.46662 * 329.99815 * 20 19 18 39 39 H 1.07990 * 120.06084 * 359.97438 * 23 22 21 40 40 H 1.07998 * 119.66984 * 179.72417 * 24 23 22 41 41 H 1.08001 * 119.76989 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.15722 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.2950 3.3014 -1.1822 8 1 4.8542 4.2253 -1.1743 9 6 3.8929 2.7429 -2.3893 10 7 2.8933 1.8905 -2.4182 11 14 4.7735 3.2037 -3.9709 12 1 6.2078 2.8341 -3.8646 13 1 4.1585 2.4762 -5.1100 14 1 4.6547 4.6669 -4.1953 15 6 4.0562 3.3608 1.1595 16 8 3.7787 2.8107 2.2043 17 6 4.4830 4.8060 1.1589 18 7 4.4828 5.3159 2.5323 19 6 3.4376 5.9043 3.1739 20 6 2.0759 6.1377 2.5719 21 7 3.7847 6.2362 4.3831 22 6 5.0779 5.8835 4.5998 23 6 5.9385 6.0016 5.6945 24 6 7.2206 5.5385 5.6053 25 6 7.6810 4.9502 4.4357 26 6 6.8499 4.8231 3.3434 27 6 5.5434 5.2874 3.4157 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 2.6128 1.5003 -3.2609 34 1 3.7882 5.3898 0.5549 35 1 5.4861 4.8885 0.7404 36 1 1.4394 5.2747 2.7675 37 1 1.6294 7.0268 3.0170 38 1 2.1741 6.2803 1.4957 39 1 5.5906 6.4580 6.6092 40 1 7.8841 5.6356 6.4519 41 1 8.6975 4.5895 4.3811 42 1 7.2131 4.3642 2.4358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172359249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:16 Heat of formation + Delta-G solvation = -28.287295 kcal Electronic energy + Delta-G solvation = -28993.269904 eV Core-core repulsion = 24940.212498 eV Total energy + Delta-G solvation = -4053.057406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83772 -39.60698 -38.46420 -37.08953 -35.61248 -34.79663 -33.67546 -31.83535 -31.11742 -30.25618 -29.02206 -27.33558 -27.12042 -26.07359 -24.70779 -21.88672 -21.80631 -20.80225 -19.82729 -19.31562 -17.63318 -17.05258 -16.89972 -16.69906 -16.10272 -15.61928 -15.38525 -15.08080 -15.00342 -14.49219 -14.33825 -14.22186 -13.64335 -13.56144 -12.99005 -12.91729 -12.75788 -12.65797 -12.58167 -12.35368 -11.83249 -11.68675 -11.56331 -11.47758 -11.33318 -11.22138 -11.15712 -10.95146 -10.76405 -10.63690 -10.20758 -9.93086 -9.76716 -9.59683 -9.19019 -8.90077 -8.19944 -7.91407 -7.73245 -6.73198 -4.24913 1.26684 1.83688 2.85147 2.94058 3.05832 3.06660 3.16399 3.28218 3.54335 3.77505 3.90514 4.18710 4.41089 4.46711 4.74582 4.81438 5.17593 5.22256 5.30343 5.48293 5.57405 5.61710 5.66742 5.69384 5.71687 5.72678 5.81617 5.84798 5.94299 6.02107 6.08412 6.13219 6.25443 6.42815 6.44732 6.75248 6.80796 6.85835 7.05860 7.18193 7.26442 7.39661 7.48143 7.96431 8.26306 8.72968 8.94321 9.08020 9.48113 10.33249 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.004176 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.274742 B = 6703.050719 C = 7666.608310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.499 6.499 5 C 0.157 3.843 6 N -0.420 5.420 7 C -0.351 4.351 8 H 0.104 0.896 9 C 0.045 3.955 10 N -0.860 5.860 11 Si 0.926 3.074 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.449 3.551 16 O -0.585 6.585 17 C 0.108 3.892 18 N -0.463 5.463 19 C 0.301 3.699 20 C -0.077 4.077 21 N -0.508 5.508 22 C 0.049 3.951 23 C -0.072 4.072 24 C -0.134 4.134 25 C -0.115 4.115 26 C -0.101 4.101 27 C 0.058 3.942 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.277 0.723 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 2.511 3.684 5.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.384 6.384 5 C 0.031 3.969 6 N -0.139 5.139 7 C -0.478 4.478 8 H 0.121 0.879 9 C -0.162 4.162 10 N -0.496 5.496 11 Si 0.752 3.248 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.196 1.196 15 C 0.237 3.763 16 O -0.469 6.469 17 C -0.017 4.017 18 N -0.151 5.151 19 C 0.036 3.964 20 C -0.136 4.136 21 N -0.229 5.229 22 C -0.070 4.070 23 C -0.091 4.091 24 C -0.155 4.155 25 C -0.134 4.134 26 C -0.121 4.121 27 C -0.051 4.051 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.718 2.766 4.479 5.924 hybrid contribution 0.465 -0.330 -1.856 1.941 sum 3.182 2.437 2.623 4.790 Atomic orbital electron populations 1.22950 0.78475 1.01942 1.01690 1.86448 1.21855 1.35335 1.85622 1.23838 0.92162 0.80654 0.70655 1.90505 1.66480 1.36362 1.45041 1.20479 0.87489 0.85151 1.03757 1.43337 1.56607 1.08115 1.05809 1.19551 1.35456 1.10454 0.82301 0.87878 1.25237 0.94476 0.96709 0.99784 1.69834 1.21616 1.29647 1.28502 0.85998 0.79620 0.79000 0.80165 1.19531 1.20693 1.19618 1.20138 0.83818 0.87912 0.84463 1.90632 1.54958 1.69528 1.31788 1.21522 1.05140 0.95347 0.79674 1.44922 1.09910 1.47804 1.12430 1.23522 0.91374 0.93200 0.88264 1.20376 0.88552 1.04083 1.00569 1.70388 1.11739 1.26745 1.13995 1.19031 0.91647 1.02303 0.94041 1.19898 0.92390 1.00471 0.96379 1.20522 0.95501 1.01254 0.98175 1.20757 0.99201 1.00759 0.92721 1.19980 0.90456 1.01844 0.99848 1.18826 0.90899 1.03958 0.91462 0.89508 0.93094 0.92531 0.85782 0.89906 0.91267 0.86436 0.87371 0.89161 0.89032 0.90122 0.85919 0.85913 0.85749 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.38 -7.83 10.56 -39.24 -0.41 -8.24 16 3 C 0.49 11.51 6.13 36.00 0.22 11.73 16 4 O -0.50 -13.12 15.76 -18.75 -0.30 -13.41 16 5 C 0.16 3.56 5.14 -5.19 -0.03 3.53 16 6 N -0.42 -9.69 2.18 -116.10 -0.25 -9.94 16 7 C -0.35 -7.89 9.14 -14.93 -0.14 -8.03 16 8 H 0.10 2.10 6.56 -52.48 -0.34 1.76 16 9 C 0.04 1.01 4.88 -17.47 -0.09 0.93 16 10 N -0.86 -20.60 9.27 55.50 0.51 -20.08 16 11 Si 0.93 17.56 29.60 -169.99 -5.03 12.53 16 12 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 15 C 0.45 10.21 7.49 -10.99 -0.08 10.13 16 16 O -0.58 -15.09 16.11 5.55 0.09 -15.00 16 17 C 0.11 2.03 4.86 -5.19 -0.03 2.00 16 18 N -0.46 -8.92 2.29 -112.43 -0.26 -9.18 16 19 C 0.30 5.72 7.85 -154.83 -1.22 4.50 16 20 C -0.08 -1.20 10.17 36.01 0.37 -0.83 16 21 N -0.51 -10.09 11.27 -8.24 -0.09 -10.18 16 22 C 0.05 0.93 7.23 -84.70 -0.61 0.31 16 23 C -0.07 -1.13 10.05 -39.61 -0.40 -1.52 16 24 C -0.13 -1.79 9.96 -39.97 -0.40 -2.19 16 25 C -0.11 -1.57 10.03 -39.52 -0.40 -1.97 16 26 C -0.10 -1.64 10.05 -39.50 -0.40 -2.04 16 27 C 0.06 1.11 6.87 -83.99 -0.58 0.53 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.12 2.77 6.38 -51.93 -0.33 2.44 16 32 H 0.08 1.79 7.61 -51.93 -0.40 1.40 16 33 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 34 H 0.12 2.04 6.95 -51.92 -0.36 1.68 16 35 H 0.11 1.79 7.69 -51.93 -0.40 1.39 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.15 7.01 -51.93 -0.36 0.78 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -32.19 362.22 -8.12 -40.31 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.13 Total: 8.86 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -2.70 Total: 18.88 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.09 Total: -49.39 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.62 Total: -36.66 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.19 -8.12 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.020 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds