Wall clock time and date at job start Tue Mar 31 2020 16:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00516 * 2 1 4 4 O 1.20830 * 119.99632 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00426 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47267 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99658 * 263.98876 * 6 5 3 8 8 H 1.08003 * 119.99501 * 197.00700 * 7 6 5 9 9 C 1.38946 * 120.00338 * 17.01225 * 7 6 5 10 10 N 1.31407 * 119.99961 * 21.24812 * 9 7 6 11 11 Si 1.86797 * 120.00147 * 201.25775 * 9 7 6 12 12 H 1.48495 * 109.47408 * 59.99140 * 11 9 7 13 13 H 1.48495 * 109.47489 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46773 * 299.99536 * 11 9 7 15 15 C 1.34773 * 120.00075 * 83.99146 * 6 5 3 16 16 O 1.21293 * 119.99688 * 359.97438 * 15 6 5 17 17 C 1.50692 * 119.99972 * 180.02562 * 15 6 5 18 18 N 1.46505 * 109.47362 * 179.97438 * 17 15 6 19 19 C 1.36027 * 126.35174 * 270.04304 * 18 17 15 20 20 C 1.50704 * 124.95271 * 359.97438 * 19 18 17 21 21 N 1.30107 * 110.10144 * 179.97438 * 19 18 17 22 22 C 1.35786 * 109.64248 * 0.02562 * 21 19 18 23 23 C 1.39741 * 133.59754 * 179.97438 * 22 21 19 24 24 C 1.36606 * 119.88276 * 179.97438 * 23 22 21 25 25 C 1.38784 * 120.66799 * 0.02562 * 24 23 22 26 26 C 1.37849 * 120.45400 * 359.97438 * 25 24 23 27 27 C 1.38055 * 126.34477 * 89.99674 * 18 17 15 28 28 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46847 * 300.00617 * 1 2 3 30 30 H 1.09001 * 109.47003 * 60.00411 * 1 2 3 31 31 H 1.09002 * 109.47002 * 59.99409 * 5 3 2 32 32 H 1.08998 * 109.47143 * 299.99727 * 5 3 2 33 33 H 0.97007 * 120.00281 * 180.02562 * 10 9 7 34 34 H 1.09008 * 109.47085 * 59.99762 * 17 15 6 35 35 H 1.09004 * 109.47410 * 299.99917 * 17 15 6 36 36 H 1.09004 * 109.47084 * 89.99427 * 20 19 18 37 37 H 1.08997 * 109.46987 * 209.99773 * 20 19 18 38 38 H 1.09006 * 109.46662 * 329.99815 * 20 19 18 39 39 H 1.07990 * 120.06084 * 359.97438 * 23 22 21 40 40 H 1.07998 * 119.66984 * 179.72417 * 24 23 22 41 41 H 1.08001 * 119.76989 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.15722 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.2950 3.3014 -1.1822 8 1 4.8542 4.2253 -1.1743 9 6 3.8929 2.7429 -2.3893 10 7 2.8933 1.8905 -2.4182 11 14 4.7735 3.2037 -3.9709 12 1 6.2078 2.8341 -3.8646 13 1 4.1585 2.4762 -5.1100 14 1 4.6547 4.6669 -4.1953 15 6 4.0562 3.3608 1.1595 16 8 3.7787 2.8107 2.2043 17 6 4.4830 4.8060 1.1589 18 7 4.4828 5.3159 2.5323 19 6 3.4376 5.9043 3.1739 20 6 2.0759 6.1377 2.5719 21 7 3.7847 6.2362 4.3831 22 6 5.0779 5.8835 4.5998 23 6 5.9385 6.0016 5.6945 24 6 7.2206 5.5385 5.6053 25 6 7.6810 4.9502 4.4357 26 6 6.8499 4.8231 3.3434 27 6 5.5434 5.2874 3.4157 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 2.6128 1.5003 -3.2609 34 1 3.7882 5.3898 0.5549 35 1 5.4861 4.8885 0.7404 36 1 1.4394 5.2747 2.7675 37 1 1.6294 7.0268 3.0170 38 1 2.1741 6.2803 1.4957 39 1 5.5906 6.4580 6.6092 40 1 7.8841 5.6356 6.4519 41 1 8.6975 4.5895 4.3811 42 1 7.2131 4.3642 2.4358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172359249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:16 Heat of formation + Delta-G solvation = -45.823238 kcal Electronic energy + Delta-G solvation = -28994.030320 eV Core-core repulsion = 24940.212498 eV Total energy + Delta-G solvation = -4053.817822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.16767 -41.38260 -40.19269 -38.30411 -37.36562 -36.60892 -35.11527 -33.60144 -32.36373 -31.55803 -30.61755 -28.73422 -28.40635 -27.66526 -26.39613 -23.16841 -23.03891 -22.44618 -21.45102 -20.88616 -19.23790 -18.56909 -18.45790 -18.27384 -17.61380 -17.33530 -17.04560 -16.52931 -16.23374 -16.13162 -15.89762 -15.76082 -14.95875 -14.84718 -14.61466 -14.32208 -14.25234 -14.10802 -14.01568 -13.59299 -13.45799 -13.14823 -13.05100 -12.87994 -12.75918 -12.57327 -12.53438 -12.41252 -12.31254 -12.15417 -11.64490 -11.60520 -11.55560 -10.98821 -10.96050 -10.62241 -9.98943 -9.20119 -9.00998 -8.45020 -6.02699 0.02940 0.61713 1.34800 1.49919 1.52709 1.60657 1.64681 1.73036 1.82135 2.14809 2.30027 2.75701 2.96815 3.05093 3.21555 3.52125 3.78103 3.99723 4.09531 4.15035 4.19337 4.22552 4.31734 4.36795 4.37567 4.45622 4.49225 4.54349 4.57089 4.63578 4.68610 4.74830 4.89899 4.91772 5.24828 5.34639 5.53104 5.55819 5.60364 5.64428 5.64620 6.02698 6.11335 6.24019 6.89661 6.98194 7.14264 7.33107 7.73635 8.61461 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.004176 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.274742 B = 6703.050719 C = 7666.608310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.533 6.533 5 C 0.154 3.846 6 N -0.425 5.425 7 C -0.365 4.365 8 H 0.123 0.877 9 C 0.006 3.994 10 N -0.889 5.889 11 Si 0.995 3.005 12 H -0.262 1.262 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.441 3.559 16 O -0.624 6.624 17 C 0.119 3.881 18 N -0.470 5.470 19 C 0.280 3.720 20 C -0.072 4.072 21 N -0.529 5.529 22 C 0.013 3.987 23 C -0.085 4.085 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.123 4.123 27 C 0.031 3.969 28 H 0.133 0.867 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.275 0.725 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 2.870 3.601 7.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.421 6.421 5 C 0.028 3.972 6 N -0.144 5.144 7 C -0.491 4.491 8 H 0.141 0.859 9 C -0.198 4.198 10 N -0.526 5.526 11 Si 0.818 3.182 12 H -0.186 1.186 13 H -0.215 1.215 14 H -0.190 1.190 15 C 0.230 3.770 16 O -0.511 6.511 17 C -0.006 4.006 18 N -0.159 5.159 19 C 0.015 3.985 20 C -0.130 4.130 21 N -0.251 5.251 22 C -0.105 4.105 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.078 4.078 28 H 0.151 0.849 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.703 3.118 4.403 7.157 hybrid contribution -0.135 -0.526 -1.730 1.813 sum 4.569 2.592 2.673 5.893 Atomic orbital electron populations 1.23296 0.76055 1.04888 1.01248 1.86419 1.24220 1.33845 1.85013 1.23986 0.92538 0.80860 0.69720 1.90474 1.67259 1.37528 1.46812 1.20525 0.87304 0.85617 1.03753 1.43563 1.56238 1.08244 1.06322 1.20049 1.35591 1.11248 0.82174 0.85935 1.26084 0.94625 0.96515 1.02537 1.69942 1.22846 1.30829 1.28962 0.84957 0.78585 0.78664 0.75999 1.18621 1.21501 1.19034 1.20790 0.83203 0.89287 0.83718 1.90593 1.56688 1.70765 1.33059 1.21459 1.06405 0.92612 0.80173 1.44984 1.10301 1.48056 1.12557 1.24059 0.92356 0.93592 0.88487 1.20431 0.87020 1.04362 1.01221 1.70330 1.12661 1.27554 1.14521 1.19576 0.91874 1.03641 0.95446 1.20292 0.93091 1.00933 0.96148 1.21033 0.94917 0.98923 0.99258 1.21288 1.00378 0.98684 0.91641 1.20312 0.89979 1.02659 1.01388 1.19299 0.91899 1.04981 0.91620 0.84864 0.93226 0.93324 0.85734 0.89649 0.91525 0.85375 0.85208 0.90787 0.86643 0.89167 0.84399 0.81696 0.81906 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.47 16 2 O -0.38 -15.85 10.56 -51.37 -0.54 -16.39 16 3 C 0.49 23.52 6.13 71.23 0.44 23.96 16 4 O -0.53 -28.76 15.76 21.95 0.35 -28.41 16 5 C 0.15 7.13 5.14 85.63 0.44 7.57 16 6 N -0.43 -19.86 2.18 -639.61 -1.39 -21.25 16 7 C -0.36 -16.20 9.14 84.04 0.77 -15.43 16 8 H 0.12 4.82 6.56 -2.91 -0.02 4.80 16 9 C 0.01 0.27 4.88 84.93 0.41 0.68 16 10 N -0.89 -42.80 9.27 21.66 0.20 -42.60 16 11 Si 0.99 35.17 29.60 68.60 2.03 37.20 16 12 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 13 H -0.29 -10.51 7.11 99.48 0.71 -9.80 16 14 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 15 C 0.44 20.38 7.49 87.66 0.66 21.04 16 16 O -0.62 -33.22 16.11 -3.07 -0.05 -33.27 16 17 C 0.12 4.43 4.86 85.63 0.42 4.85 16 18 N -0.47 -18.38 2.29 -509.62 -1.17 -19.55 16 19 C 0.28 10.90 7.85 137.93 1.08 11.99 16 20 C -0.07 -2.29 10.17 71.24 0.72 -1.56 16 21 N -0.53 -21.52 11.27 -179.97 -2.03 -23.55 16 22 C 0.01 0.48 7.23 39.45 0.29 0.77 16 23 C -0.09 -2.55 10.05 22.25 0.22 -2.33 16 24 C -0.12 -2.84 9.96 22.02 0.22 -2.62 16 25 C -0.10 -2.44 10.03 22.31 0.22 -2.21 16 26 C -0.12 -3.85 10.05 22.32 0.22 -3.62 16 27 C 0.03 1.17 6.87 38.86 0.27 1.44 16 28 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.12 5.68 6.38 -2.39 -0.02 5.66 16 32 H 0.09 3.82 7.61 -2.39 -0.02 3.80 16 33 H 0.27 12.74 8.31 -92.70 -0.77 11.97 16 34 H 0.13 4.44 6.95 -2.38 -0.02 4.42 16 35 H 0.13 4.18 7.69 -2.38 -0.02 4.16 16 36 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.12 2.97 8.14 -2.39 -0.02 2.96 16 38 H 0.09 2.60 7.01 -2.38 -0.02 2.59 16 39 H 0.14 3.55 8.06 -2.92 -0.02 3.53 16 40 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -71.75 362.22 6.03 -65.72 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 1.06 Total: 35.13 kcal Atomic # 6 Polarization: 39.39 SS G_CDS: 7.58 Total: 46.97 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.39 Total: -106.95 kcal Atomic # 8 Polarization: -77.83 SS G_CDS: -0.25 Total: -78.08 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -71.75 6.03 -65.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.897 kcal (2) G-P(sol) polarization free energy of solvation -71.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds