Wall clock time and date at job start Tue Mar 31 2020 16:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46998 * 2 1 4 4 C 1.38386 * 119.85223 * 98.20998 * 3 2 1 5 5 C 1.37938 * 120.14571 * 179.71953 * 4 3 2 6 6 C 1.39601 * 119.84864 * 0.26094 * 5 4 3 7 7 C 1.47847 * 120.13911 * 179.97438 * 6 5 4 8 8 O 1.21557 * 119.99708 * 132.47750 * 7 6 5 9 9 N 1.34770 * 120.00378 * 312.48333 * 7 6 5 10 10 C 1.46498 * 120.00273 * 177.10580 * 9 7 6 11 11 C 1.50701 * 109.47546 * 89.99843 * 10 9 7 12 12 H 1.08004 * 119.99312 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00343 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99787 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47001 * 120.00256 * 15 13 11 18 18 H 1.48503 * 109.46939 * 240.00418 * 15 13 11 19 19 C 1.46508 * 120.00012 * 357.10528 * 9 7 6 20 20 C 1.52997 * 109.47211 * 104.65239 * 19 9 7 21 21 C 1.47202 * 109.47021 * 183.49138 * 20 19 9 22 22 N 6.90523 * 83.29738 * 45.25455 * 2 1 3 23 23 C 1.39554 * 119.71446 * 359.97438 * 6 5 4 24 24 C 1.37982 * 119.85302 * 359.97438 * 23 6 5 25 25 N 1.48006 * 119.92609 * 180.02562 * 24 23 6 26 26 O 1.21803 * 120.00514 * 5.74277 * 25 24 23 27 27 O 1.21803 * 120.00265 * 185.74373 * 25 24 23 28 28 H 1.08995 * 109.47266 * 60.00248 * 1 2 3 29 29 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47052 * 299.99636 * 1 2 3 31 31 H 1.09002 * 109.47052 * 240.00364 * 2 1 3 32 32 H 1.09004 * 109.47577 * 120.00233 * 2 1 3 33 33 H 1.07994 * 119.92785 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.07304 * 180.27697 * 5 4 3 35 35 H 1.09007 * 109.47142 * 209.99776 * 10 9 7 36 36 H 1.09000 * 109.47133 * 329.99952 * 10 9 7 37 37 H 0.97003 * 119.99442 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46839 * 224.65158 * 19 9 7 39 39 H 1.09001 * 109.46608 * 344.65313 * 19 9 7 40 40 H 1.09001 * 109.47257 * 303.49285 * 20 19 9 41 41 H 1.09003 * 109.47115 * 63.49511 * 20 19 9 42 42 H 1.07998 * 120.07269 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4235 2.0131 1.1879 5 6 2.8896 3.3113 1.1941 6 6 2.9611 4.0296 -0.0008 7 6 3.4592 5.4216 -0.0015 8 8 4.2904 5.7693 -0.8176 9 7 2.9919 6.3051 0.9026 10 6 3.5313 7.6665 0.9430 11 6 2.7230 8.5544 0.0321 12 1 1.8905 8.1454 -0.5211 13 6 3.0457 9.8889 -0.0940 14 7 4.0591 10.3869 0.5801 15 14 2.0442 10.9891 -1.2236 16 1 0.9668 10.1921 -1.8633 17 1 1.4407 12.0918 -0.4331 18 1 2.9286 11.5581 -2.2721 19 6 1.9445 5.9039 1.8451 20 6 2.5600 5.6847 3.2286 21 6 1.5238 5.2011 4.1556 22 7 0.7240 4.8278 4.8709 23 6 2.5604 3.4280 -1.1946 24 6 2.0970 2.1283 -1.1870 25 7 1.6722 1.4885 -2.4522 26 8 1.8290 2.0694 -3.5112 27 8 1.1657 0.3809 -2.4345 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3683 1.4561 2.1115 34 1 3.1988 3.7709 2.1212 35 1 3.4787 8.0481 1.9627 36 1 4.5698 7.6559 0.6121 37 1 4.2863 11.3258 0.4910 38 1 1.1889 6.6873 1.9036 39 1 1.4824 4.9782 1.5022 40 1 3.3581 4.9457 3.1582 41 1 2.9676 6.6257 3.5982 42 1 2.6129 3.9784 -2.1223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173440992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:57 Heat of formation + Delta-G solvation = 21.636502 kcal Electronic energy + Delta-G solvation = -28180.892411 eV Core-core repulsion = 24129.999863 eV Total energy + Delta-G solvation = -4050.892548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39879 -40.52509 -38.74169 -37.11047 -36.80725 -35.55779 -34.43208 -33.00174 -32.18457 -31.09909 -30.40032 -27.65188 -26.64403 -25.00246 -24.21686 -23.01924 -22.91682 -21.82629 -20.05381 -18.76517 -18.31405 -17.93858 -17.68002 -16.77604 -16.57814 -16.44368 -16.08048 -15.58484 -14.96350 -14.62524 -14.58780 -14.36652 -14.05209 -13.99618 -13.66193 -13.20355 -13.19168 -12.69783 -12.49639 -12.43942 -12.24161 -12.16515 -11.92493 -11.83796 -11.60146 -11.45705 -11.40806 -11.16898 -11.05443 -11.01512 -10.77135 -10.63702 -10.31012 -9.87560 -9.82652 -9.55770 -9.26085 -8.58029 -8.11082 -6.20245 -4.25308 -0.31766 0.48758 1.16287 1.27134 2.53764 2.64144 2.72310 3.13366 3.22484 3.31552 3.35375 3.41257 3.85159 4.05717 4.07770 4.28839 4.34506 4.52980 4.56796 4.77368 4.82586 4.88527 4.92132 5.00205 5.15555 5.17550 5.21863 5.29838 5.41525 5.56199 5.61890 5.64080 5.71196 5.83011 5.89189 5.92404 5.96319 6.38031 6.69128 7.11228 7.21175 7.40587 7.58246 7.75120 7.93108 8.02348 8.51798 8.79410 9.41128 10.88005 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.003821 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.012737 B = 7325.268015 C = 8969.551787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.125 4.125 5 C -0.048 4.048 6 C -0.117 4.117 7 C 0.550 3.450 8 O -0.512 6.512 9 N -0.584 5.584 10 C 0.244 3.756 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.108 3.892 20 C -0.055 4.055 21 C 0.213 3.787 22 N -0.437 5.437 23 C -0.006 4.006 24 C -0.049 4.049 25 N 0.033 4.967 26 O -0.163 6.163 27 O -0.156 6.156 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -17.886 4.662 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.005 4.005 4 C -0.143 4.143 5 C -0.066 4.066 6 C -0.121 4.121 7 C 0.335 3.665 8 O -0.387 6.387 9 N -0.315 5.315 10 C 0.126 3.874 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.018 4.018 20 C -0.095 4.095 21 C -0.105 4.105 22 N -0.114 5.114 23 C -0.026 4.026 24 C -0.133 4.133 25 N 0.550 4.450 26 O -0.377 6.377 27 O -0.370 6.370 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.727 -17.727 5.912 19.055 hybrid contribution -0.275 0.825 -1.142 1.436 sum -4.002 -16.902 4.770 18.012 Atomic orbital electron populations 1.21680 0.93194 1.02785 1.02038 1.21025 0.97677 0.90392 1.04803 1.20039 0.92818 0.97171 0.90475 1.21071 1.00810 0.95128 0.97324 1.22107 0.92478 0.93758 0.98258 1.20223 1.02339 0.96842 0.92688 1.17906 0.82793 0.83513 0.82333 1.90849 1.32542 1.78351 1.36980 1.48174 1.37450 1.14262 1.31633 1.19467 0.95968 0.74018 0.97952 1.21403 1.15235 0.93732 1.26750 0.92189 1.24897 0.95176 0.97951 0.95762 1.69915 1.27343 1.14381 1.41409 0.86449 0.80097 0.80349 0.80612 1.19730 1.20912 1.20751 1.21504 0.91473 1.02337 0.86495 1.19988 0.93095 1.04174 0.92291 1.29004 0.94296 0.93263 0.93960 1.81234 1.10224 1.09646 1.10283 1.21049 0.90144 0.91249 1.00148 1.20789 1.12764 0.95481 0.84236 1.43504 0.98413 1.00458 1.02651 1.94591 1.59536 1.65131 1.18478 1.94442 1.43253 1.05730 1.93625 0.92025 0.91378 0.92859 0.87938 0.90206 0.83214 0.83158 0.94170 0.93243 0.92575 0.88519 0.90274 0.87419 0.85643 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.39 37.16 0.35 -0.77 16 2 C -0.10 -0.82 5.32 -27.88 -0.15 -0.97 16 3 C 0.00 -0.03 5.14 -104.53 -0.54 -0.57 16 4 C -0.12 -1.00 9.65 -39.64 -0.38 -1.39 16 5 C -0.05 -0.45 7.57 -39.18 -0.30 -0.74 16 6 C -0.12 -1.53 4.82 -104.97 -0.51 -2.04 16 7 C 0.55 9.56 7.23 -12.33 -0.09 9.47 16 8 O -0.51 -11.36 16.62 5.32 0.09 -11.27 16 9 N -0.58 -9.78 2.49 -176.17 -0.44 -10.22 16 10 C 0.24 5.33 5.09 -5.19 -0.03 5.30 16 11 C -0.53 -13.52 9.39 -34.44 -0.32 -13.85 16 12 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.11 1.29 4.85 -4.04 -0.02 1.27 16 20 C -0.05 -0.49 5.32 -29.52 -0.16 -0.64 16 21 C 0.21 2.22 15.43 -20.76 -0.32 1.90 16 22 N -0.44 -5.70 18.54 42.16 0.78 -4.92 16 23 C -0.01 -0.08 9.22 -39.18 -0.36 -0.44 16 24 C -0.05 -0.61 6.83 -80.01 -0.55 -1.16 16 25 N 0.03 0.45 4.45 33.93 0.15 0.60 16 26 O -0.16 -2.53 18.45 -29.46 -0.54 -3.07 16 27 O -0.16 -2.03 13.47 -29.46 -0.40 -2.43 16 28 H 0.06 0.61 6.56 -51.93 -0.34 0.26 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.92 5.95 -51.93 -0.31 0.62 16 32 H 0.08 0.46 8.02 -51.93 -0.42 0.05 16 33 H 0.15 0.76 8.04 -52.49 -0.42 0.34 16 34 H 0.15 1.08 4.34 -52.49 -0.23 0.86 16 35 H 0.04 0.85 7.41 -51.93 -0.38 0.46 16 36 H 0.05 1.24 7.46 -51.93 -0.39 0.85 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 0.82 5.32 -51.93 -0.28 0.54 16 40 H 0.11 0.71 5.77 -51.93 -0.30 0.41 16 41 H 0.13 1.13 7.53 -51.93 -0.39 0.74 16 42 H 0.16 2.35 7.62 -52.49 -0.40 1.95 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -31.96 363.44 -7.30 -39.25 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.67 Total: -2.38 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.46 Total: -3.01 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 1.23 Total: -38.17 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.85 Total: -16.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.96 -7.30 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173440992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.891 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds