Wall clock time and date at job start Tue Mar 31 2020 16:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46998 * 2 1 4 4 C 1.38386 * 119.85223 * 98.20998 * 3 2 1 5 5 C 1.37938 * 120.14571 * 179.71953 * 4 3 2 6 6 C 1.39601 * 119.84864 * 0.26094 * 5 4 3 7 7 C 1.47847 * 120.13911 * 179.97438 * 6 5 4 8 8 O 1.21557 * 119.99708 * 132.47750 * 7 6 5 9 9 N 1.34770 * 120.00378 * 312.48333 * 7 6 5 10 10 C 1.46498 * 120.00273 * 177.10580 * 9 7 6 11 11 C 1.50701 * 109.47546 * 89.99843 * 10 9 7 12 12 H 1.08004 * 119.99312 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00343 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99787 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47001 * 120.00256 * 15 13 11 18 18 H 1.48503 * 109.46939 * 240.00418 * 15 13 11 19 19 C 1.46508 * 120.00012 * 357.10528 * 9 7 6 20 20 C 1.52997 * 109.47211 * 104.65239 * 19 9 7 21 21 C 1.47202 * 109.47021 * 183.49138 * 20 19 9 22 22 N 6.90523 * 83.29738 * 45.25455 * 2 1 3 23 23 C 1.39554 * 119.71446 * 359.97438 * 6 5 4 24 24 C 1.37982 * 119.85302 * 359.97438 * 23 6 5 25 25 N 1.48006 * 119.92609 * 180.02562 * 24 23 6 26 26 O 1.21803 * 120.00514 * 5.74277 * 25 24 23 27 27 O 1.21803 * 120.00265 * 185.74373 * 25 24 23 28 28 H 1.08995 * 109.47266 * 60.00248 * 1 2 3 29 29 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47052 * 299.99636 * 1 2 3 31 31 H 1.09002 * 109.47052 * 240.00364 * 2 1 3 32 32 H 1.09004 * 109.47577 * 120.00233 * 2 1 3 33 33 H 1.07994 * 119.92785 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.07304 * 180.27697 * 5 4 3 35 35 H 1.09007 * 109.47142 * 209.99776 * 10 9 7 36 36 H 1.09000 * 109.47133 * 329.99952 * 10 9 7 37 37 H 0.97003 * 119.99442 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46839 * 224.65158 * 19 9 7 39 39 H 1.09001 * 109.46608 * 344.65313 * 19 9 7 40 40 H 1.09001 * 109.47257 * 303.49285 * 20 19 9 41 41 H 1.09003 * 109.47115 * 63.49511 * 20 19 9 42 42 H 1.07998 * 120.07269 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4235 2.0131 1.1879 5 6 2.8896 3.3113 1.1941 6 6 2.9611 4.0296 -0.0008 7 6 3.4592 5.4216 -0.0015 8 8 4.2904 5.7693 -0.8176 9 7 2.9919 6.3051 0.9026 10 6 3.5313 7.6665 0.9430 11 6 2.7230 8.5544 0.0321 12 1 1.8905 8.1454 -0.5211 13 6 3.0457 9.8889 -0.0940 14 7 4.0591 10.3869 0.5801 15 14 2.0442 10.9891 -1.2236 16 1 0.9668 10.1921 -1.8633 17 1 1.4407 12.0918 -0.4331 18 1 2.9286 11.5581 -2.2721 19 6 1.9445 5.9039 1.8451 20 6 2.5600 5.6847 3.2286 21 6 1.5238 5.2011 4.1556 22 7 0.7240 4.8278 4.8709 23 6 2.5604 3.4280 -1.1946 24 6 2.0970 2.1283 -1.1870 25 7 1.6722 1.4885 -2.4522 26 8 1.8290 2.0694 -3.5112 27 8 1.1657 0.3809 -2.4345 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3683 1.4561 2.1115 34 1 3.1988 3.7709 2.1212 35 1 3.4787 8.0481 1.9627 36 1 4.5698 7.6559 0.6121 37 1 4.2863 11.3258 0.4910 38 1 1.1889 6.6873 1.9036 39 1 1.4824 4.9782 1.5022 40 1 3.3581 4.9457 3.1582 41 1 2.9676 6.6257 3.5982 42 1 2.6129 3.9784 -2.1223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173440992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:56 Heat of formation + Delta-G solvation = 3.828613 kcal Electronic energy + Delta-G solvation = -28181.664619 eV Core-core repulsion = 24129.999863 eV Total energy + Delta-G solvation = -4051.664756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.44102 -41.65870 -39.86789 -38.13629 -37.87300 -36.83986 -35.38576 -34.72809 -33.15591 -32.24274 -31.31855 -29.28548 -27.65069 -26.12931 -25.45732 -24.32363 -23.85064 -22.70234 -21.24133 -19.82654 -19.50769 -18.94348 -18.73701 -18.42551 -17.74833 -17.57196 -17.07333 -16.87538 -16.23189 -15.84262 -15.75724 -15.33795 -14.96789 -14.86193 -14.64574 -14.44841 -14.25738 -13.97075 -13.62890 -13.52491 -13.26535 -13.19837 -13.02813 -12.99442 -12.71832 -12.70152 -12.55944 -12.53806 -12.35547 -12.21396 -12.10796 -11.94101 -11.68437 -11.44483 -10.99754 -10.68228 -10.60450 -10.23599 -9.63989 -8.21614 -6.32339 -1.29529 -0.45222 0.20031 0.28512 1.37102 1.41042 1.49182 1.53477 1.69967 1.82751 1.99859 2.28231 2.40575 2.91939 3.11669 3.21479 3.27278 3.42301 3.60514 3.68599 3.89846 3.94937 4.00580 4.21278 4.32856 4.40343 4.44148 4.51731 4.71767 4.77371 4.79299 4.84964 4.97912 5.02307 5.09107 5.12428 5.21614 5.29889 5.32849 5.48987 5.51584 5.79357 6.08536 6.48809 6.50362 6.59661 6.75598 7.14948 7.38777 8.85402 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.003821 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.012737 B = 7325.268015 C = 8969.551787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C 0.008 3.992 4 C -0.102 4.102 5 C -0.030 4.030 6 C -0.127 4.127 7 C 0.548 3.452 8 O -0.574 6.574 9 N -0.582 5.582 10 C 0.258 3.742 11 C -0.543 4.543 12 H 0.049 0.951 13 C 0.018 3.982 14 N -0.920 5.920 15 Si 0.951 3.049 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.285 1.285 19 C 0.103 3.897 20 C -0.043 4.043 21 C 0.243 3.757 22 N -0.477 5.477 23 C -0.023 4.023 24 C -0.061 4.061 25 N 0.033 4.967 26 O -0.236 6.236 27 O -0.115 6.115 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.201 0.799 34 H 0.179 0.821 35 H 0.052 0.948 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -20.485 7.729 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C 0.006 3.994 4 C -0.120 4.120 5 C -0.048 4.048 6 C -0.131 4.131 7 C 0.336 3.664 8 O -0.454 6.454 9 N -0.311 5.311 10 C 0.138 3.862 11 C -0.582 4.582 12 H 0.067 0.933 13 C -0.182 4.182 14 N -0.560 5.560 15 Si 0.777 3.223 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.211 1.211 19 C -0.021 4.021 20 C -0.084 4.084 21 C -0.075 4.075 22 N -0.154 5.154 23 C -0.043 4.043 24 C -0.145 4.145 25 N 0.546 4.454 26 O -0.432 6.432 27 O -0.343 6.343 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.218 0.782 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.786 -20.226 8.912 22.614 hybrid contribution -0.003 1.464 -2.003 2.481 sum -4.789 -18.762 6.909 20.559 Atomic orbital electron populations 1.21695 0.93029 1.03673 1.01357 1.21150 0.97612 0.88957 1.06216 1.20506 0.91231 0.97977 0.89701 1.21600 0.97938 0.94201 0.98214 1.22398 0.90942 0.94120 0.97369 1.19750 1.04530 0.94658 0.94209 1.18509 0.81708 0.85163 0.81062 1.90810 1.35355 1.79923 1.39322 1.48000 1.38073 1.12435 1.32584 1.18969 0.93559 0.76281 0.97421 1.21733 1.15073 0.94467 1.26944 0.93271 1.25593 0.96139 0.99359 0.97060 1.69991 1.28544 1.14726 1.42709 0.85611 0.78724 0.78976 0.78969 1.19780 1.19622 1.21143 1.21724 0.90153 1.03038 0.87206 1.19922 0.93152 1.05579 0.89742 1.28925 0.93429 0.91996 0.93145 1.81287 1.11293 1.11288 1.11553 1.20824 0.91848 0.92116 0.99512 1.20866 1.13986 0.95318 0.84307 1.43738 0.98166 1.00410 1.03057 1.94614 1.62925 1.66043 1.19637 1.94393 1.40888 1.05343 1.93710 0.94543 0.89785 0.91699 0.89039 0.86343 0.78172 0.80366 0.93005 0.97119 0.92450 0.89396 0.88038 0.84055 0.85224 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.39 71.98 0.68 -1.01 16 2 C -0.10 -1.17 5.32 29.85 0.16 -1.01 16 3 C 0.01 0.12 5.14 -19.81 -0.10 0.02 16 4 C -0.10 -1.04 9.65 22.23 0.21 -0.83 16 5 C -0.03 -0.44 7.57 22.53 0.17 -0.27 16 6 C -0.13 -3.25 4.82 -20.09 -0.10 -3.35 16 7 C 0.55 19.57 7.23 86.79 0.63 20.20 16 8 O -0.57 -27.22 16.62 -3.90 -0.06 -27.28 16 9 N -0.58 -19.44 2.49 -829.55 -2.07 -21.50 16 10 C 0.26 11.55 5.09 85.63 0.44 11.99 16 11 C -0.54 -28.34 9.39 25.60 0.24 -28.10 16 12 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 13 C 0.02 0.98 5.46 84.65 0.46 1.45 16 14 N -0.92 -51.17 13.29 21.45 0.28 -50.89 16 15 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 19 C 0.10 2.25 4.85 86.38 0.42 2.67 16 20 C -0.04 -0.62 5.32 28.79 0.15 -0.47 16 21 C 0.24 4.14 15.43 89.44 1.38 5.52 16 22 N -0.48 -10.92 18.54 20.01 0.37 -10.55 16 23 C -0.02 -0.64 9.22 22.53 0.21 -0.44 16 24 C -0.06 -1.48 6.83 36.34 0.25 -1.23 16 25 N 0.03 0.93 4.45 -46.56 -0.21 0.72 16 26 O -0.24 -7.99 18.45 18.88 0.35 -7.65 16 27 O -0.12 -2.90 13.47 18.88 0.25 -2.64 16 28 H 0.04 0.62 6.56 -2.39 -0.02 0.61 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.32 5.95 -2.39 -0.01 1.30 16 32 H 0.12 0.55 8.02 -2.38 -0.02 0.53 16 33 H 0.20 0.25 8.04 -2.91 -0.02 0.23 16 34 H 0.18 1.56 4.34 -2.91 -0.01 1.54 16 35 H 0.05 2.19 7.41 -2.38 -0.02 2.17 16 36 H 0.01 0.56 7.46 -2.39 -0.02 0.55 16 37 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 1.78 5.32 -2.39 -0.01 1.77 16 40 H 0.14 1.11 5.77 -2.39 -0.01 1.10 16 41 H 0.13 1.92 7.53 -2.39 -0.02 1.90 16 42 H 0.13 4.40 7.62 -2.91 -0.02 4.38 16 Total: -1.00 -76.19 363.44 7.22 -68.97 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 1.08 Total: 0.70 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.20 Total: 5.13 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.62 Total: -82.23 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: 0.54 Total: -37.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.19 7.22 -68.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173440992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.796 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds