Wall clock time and date at job start Tue Mar 31 2020 16:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.28573 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47686 * 89.99698 * 5 4 3 7 7 C 1.35900 * 117.00418 * 179.97438 * 6 5 4 8 8 C 1.38843 * 119.98619 * 359.72793 * 7 6 5 9 9 C 1.38253 * 120.24329 * 179.72094 * 8 7 6 10 10 C 1.38010 * 120.20202 * 0.55272 * 9 8 7 11 11 C 1.39571 * 119.96420 * 359.72130 * 10 9 8 12 12 C 1.47854 * 120.11581 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99904 * 179.97438 * 12 11 10 14 14 N 1.34776 * 120.00081 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00112 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47145 * 325.00149 * 15 14 12 17 17 C 1.53000 * 109.47025 * 85.00351 * 15 14 12 18 18 C 1.50695 * 109.47338 * 205.00434 * 15 14 12 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00227 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99746 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00219 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.46863 * 59.99770 * 22 20 18 24 24 H 1.48495 * 109.47110 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46824 * 300.00279 * 22 20 18 26 26 C 1.38455 * 119.98344 * 180.02562 * 7 6 5 27 27 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 28 28 O 1.21304 * 110.24811 * 359.71096 * 27 4 3 29 29 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 32 32 H 1.09002 * 109.46933 * 209.99854 * 5 4 3 33 33 H 1.08999 * 109.47263 * 329.99505 * 5 4 3 34 34 H 1.08003 * 119.88593 * 359.97438 * 8 7 6 35 35 H 1.07992 * 119.90320 * 180.24957 * 9 8 7 36 36 H 1.07995 * 120.01523 * 179.70125 * 10 9 8 37 37 H 0.97001 * 119.99852 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47033 * 180.02562 * 17 15 14 39 39 H 1.08997 * 109.47021 * 299.99813 * 17 15 14 40 40 H 1.08999 * 109.46927 * 60.00264 * 17 15 14 41 41 H 0.96997 * 119.99282 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.10728 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0014 6 8 5.2110 1.6465 1.3488 7 6 6.3440 2.3754 1.5276 8 6 7.0588 2.8280 0.4267 9 6 8.2090 3.5748 0.6023 10 6 8.6604 3.8657 1.8736 11 6 7.9517 3.4103 2.9863 12 6 8.4320 3.7205 4.3498 13 8 7.8128 3.3232 5.3174 14 7 9.5564 4.4439 4.5199 15 6 10.0320 4.7517 5.8709 16 1 9.1780 4.9043 6.5308 17 6 10.8774 3.5876 6.3915 18 6 10.8694 6.0042 5.8354 19 1 11.0307 6.5196 4.9002 20 6 11.4286 6.4927 6.9972 21 7 11.2308 5.8659 8.1364 22 14 12.4672 8.0449 6.9531 23 1 11.6473 9.1747 6.4468 24 1 12.9481 8.3576 8.3227 25 1 13.6310 7.8363 6.0547 26 6 6.7883 2.6611 2.8074 27 7 3.4646 -0.7242 0.0015 28 8 2.3029 -1.0735 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.5987 0.8371 -0.5121 33 1 4.6351 2.3337 -0.5125 34 1 6.7130 2.5993 -0.5706 35 1 8.7585 3.9274 -0.2578 36 1 9.5619 4.4453 2.0073 37 1 10.0503 4.7613 3.7477 38 1 11.2310 3.8165 7.3969 39 1 10.2718 2.6818 6.4172 40 1 11.7315 3.4352 5.7316 41 1 11.6246 6.2095 8.9535 42 1 6.2356 2.3059 3.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179213353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:38 Heat of formation + Delta-G solvation = 25.058673 kcal Electronic energy + Delta-G solvation = -26423.963409 eV Core-core repulsion = 22373.219257 eV Total energy + Delta-G solvation = -4050.744151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.10010 -40.45567 -39.04201 -37.25721 -36.27702 -34.83504 -34.14669 -32.48737 -31.24309 -30.61037 -29.47506 -28.61583 -28.30272 -25.26424 -24.39466 -23.71943 -22.50146 -22.08191 -20.91618 -19.64834 -18.85591 -18.43863 -18.02905 -16.80262 -16.49938 -16.17903 -16.10416 -15.56114 -15.23538 -15.04553 -14.45090 -14.23731 -14.14968 -13.99730 -13.76416 -13.57706 -13.26924 -12.85774 -12.84032 -12.53351 -12.42004 -12.19416 -11.81477 -11.72698 -11.57375 -11.29331 -11.11642 -11.09299 -10.95263 -10.74024 -10.43077 -10.33417 -10.23125 -9.18859 -9.07087 -9.00733 -8.55395 -8.38871 -7.93015 -6.12101 -4.21689 0.63479 0.91523 1.34731 1.51543 2.33044 2.73659 3.23357 3.26102 3.30640 3.31536 3.33026 3.54853 4.05385 4.12369 4.31721 4.37392 4.50077 4.64460 4.71753 4.73704 4.76768 4.90032 5.03512 5.13365 5.17548 5.20180 5.30669 5.40269 5.47837 5.57861 5.88273 6.11425 6.29671 6.39775 6.51539 6.83694 6.97088 7.14190 7.14560 7.42773 7.55196 7.66313 7.68839 7.90974 8.14317 8.62323 8.76372 9.06688 9.45436 10.93897 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.001892 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.725155 B =14798.288977 C =15202.995221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.181 3.819 3 N -0.469 5.469 4 C 0.169 3.831 5 C 0.156 3.844 6 O -0.308 6.308 7 C 0.118 3.882 8 C -0.194 4.194 9 C -0.086 4.086 10 C -0.122 4.122 11 C -0.079 4.079 12 C 0.541 3.459 13 O -0.547 6.547 14 N -0.699 5.699 15 C 0.263 3.737 16 H 0.051 0.949 17 C -0.147 4.147 18 C -0.535 4.535 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.092 4.092 27 N -0.360 5.360 28 O 0.087 5.913 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.389 0.611 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 -10.342 -21.707 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.040 4.040 3 N -0.204 5.204 4 C -0.104 4.104 5 C 0.079 3.921 6 O -0.221 6.221 7 C 0.074 3.926 8 C -0.213 4.213 9 C -0.105 4.105 10 C -0.140 4.140 11 C -0.083 4.083 12 C 0.326 3.674 13 O -0.426 6.426 14 N -0.346 5.346 15 C 0.162 3.838 16 H 0.069 0.931 17 C -0.206 4.206 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.112 4.112 27 N -0.066 5.066 28 O 0.023 5.977 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.223 0.777 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.750 -10.726 -20.606 28.639 hybrid contribution 0.768 0.968 -0.593 1.370 sum -15.981 -9.758 -21.199 28.284 Atomic orbital electron populations 1.20451 0.79788 1.06261 1.05587 1.28920 0.99065 0.80392 0.95599 1.71903 0.99960 1.28907 1.19624 1.25154 0.94564 0.88092 1.02606 1.20543 0.89092 0.98323 0.84141 1.86080 1.40296 1.69063 1.26645 1.18711 0.86221 0.93544 0.94125 1.21312 0.98462 1.03876 0.97616 1.20852 0.95367 0.96998 0.97237 1.21357 1.00325 1.00537 0.91830 1.20110 0.95254 0.98426 0.94468 1.18142 0.81871 0.79800 0.87611 1.90740 1.57299 1.53379 1.41195 1.46491 1.24478 1.51792 1.11876 1.18808 0.94454 0.93193 0.77365 0.93141 1.22081 0.98343 0.96436 1.03730 1.21157 1.32364 1.09113 0.94691 0.92081 1.24893 0.96205 0.97419 0.95190 1.69897 1.44071 1.39298 0.98730 0.86486 0.80351 0.82922 0.77201 1.20167 1.21124 1.20157 1.20480 0.96377 0.99175 0.95127 1.74687 0.97569 1.15460 1.18843 1.85323 1.11312 1.35855 1.65170 0.87822 0.88145 0.87454 0.88909 0.88421 0.85367 0.85090 0.84941 0.77739 0.89039 0.96547 0.95389 0.92483 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 36.01 0.38 0.25 16 2 C 0.18 1.35 8.51 -13.05 -0.11 1.24 16 3 N -0.47 -4.96 11.55 -9.87 -0.11 -5.07 16 4 C 0.17 1.90 7.85 -156.38 -1.23 0.68 16 5 C 0.16 1.56 5.36 36.00 0.19 1.75 16 6 O -0.31 -4.14 10.12 -19.43 -0.20 -4.34 16 7 C 0.12 1.61 6.68 -39.28 -0.26 1.35 16 8 C -0.19 -2.11 9.03 -39.35 -0.36 -2.47 16 9 C -0.09 -0.94 10.03 -39.66 -0.40 -1.34 16 10 C -0.12 -1.63 9.54 -39.17 -0.37 -2.00 16 11 C -0.08 -1.34 5.87 -104.98 -0.62 -1.95 16 12 C 0.54 11.50 7.74 -12.33 -0.10 11.40 16 13 O -0.55 -13.73 16.01 5.32 0.09 -13.64 16 14 N -0.70 -14.96 5.02 -55.88 -0.28 -15.24 16 15 C 0.26 6.80 2.56 -69.09 -0.18 6.63 16 16 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 17 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 18 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -24.96 11.32 55.43 0.63 -24.33 16 22 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 C -0.09 -1.50 9.53 -39.02 -0.37 -1.87 16 27 N -0.36 -4.15 12.16 30.90 0.38 -3.78 16 28 O 0.09 0.80 11.31 18.11 0.20 1.01 16 29 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.74 7.64 -51.93 -0.40 0.35 16 33 H 0.10 0.78 7.67 -51.93 -0.40 0.38 16 34 H 0.13 0.98 6.28 -52.48 -0.33 0.65 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.58 6.40 -52.49 -0.34 1.24 16 37 H 0.39 7.10 6.57 -40.82 -0.27 6.83 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.14 2.50 7.65 -52.49 -0.40 2.10 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -34.86 365.52 -7.19 -42.05 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.92 Total: 4.73 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.47 Total: -2.52 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.61 Total: -48.42 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.97 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.86 -7.19 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179213353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.109 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds