Wall clock time and date at job start Tue Mar 31 2020 16:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.28573 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47686 * 89.99698 * 5 4 3 7 7 C 1.35900 * 117.00418 * 179.97438 * 6 5 4 8 8 C 1.38843 * 119.98619 * 359.72793 * 7 6 5 9 9 C 1.38253 * 120.24329 * 179.72094 * 8 7 6 10 10 C 1.38010 * 120.20202 * 0.55272 * 9 8 7 11 11 C 1.39571 * 119.96420 * 359.72130 * 10 9 8 12 12 C 1.47854 * 120.11581 * 180.02562 * 11 10 9 13 13 O 1.21555 * 119.99904 * 179.97438 * 12 11 10 14 14 N 1.34776 * 120.00081 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00112 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47145 * 325.00149 * 15 14 12 17 17 C 1.53000 * 109.47025 * 85.00351 * 15 14 12 18 18 C 1.50695 * 109.47338 * 205.00434 * 15 14 12 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00227 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99746 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00219 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.46863 * 59.99770 * 22 20 18 24 24 H 1.48495 * 109.47110 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46824 * 300.00279 * 22 20 18 26 26 C 1.38455 * 119.98344 * 180.02562 * 7 6 5 27 27 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 28 28 O 1.21304 * 110.24811 * 359.71096 * 27 4 3 29 29 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 32 32 H 1.09002 * 109.46933 * 209.99854 * 5 4 3 33 33 H 1.08999 * 109.47263 * 329.99505 * 5 4 3 34 34 H 1.08003 * 119.88593 * 359.97438 * 8 7 6 35 35 H 1.07992 * 119.90320 * 180.24957 * 9 8 7 36 36 H 1.07995 * 120.01523 * 179.70125 * 10 9 8 37 37 H 0.97001 * 119.99852 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47033 * 180.02562 * 17 15 14 39 39 H 1.08997 * 109.47021 * 299.99813 * 17 15 14 40 40 H 1.08999 * 109.46927 * 60.00264 * 17 15 14 41 41 H 0.96997 * 119.99282 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.10728 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0014 6 8 5.2110 1.6465 1.3488 7 6 6.3440 2.3754 1.5276 8 6 7.0588 2.8280 0.4267 9 6 8.2090 3.5748 0.6023 10 6 8.6604 3.8657 1.8736 11 6 7.9517 3.4103 2.9863 12 6 8.4320 3.7205 4.3498 13 8 7.8128 3.3232 5.3174 14 7 9.5564 4.4439 4.5199 15 6 10.0320 4.7517 5.8709 16 1 9.1780 4.9043 6.5308 17 6 10.8774 3.5876 6.3915 18 6 10.8694 6.0042 5.8354 19 1 11.0307 6.5196 4.9002 20 6 11.4286 6.4927 6.9972 21 7 11.2308 5.8659 8.1364 22 14 12.4672 8.0449 6.9531 23 1 11.6473 9.1747 6.4468 24 1 12.9481 8.3576 8.3227 25 1 13.6310 7.8363 6.0547 26 6 6.7883 2.6611 2.8074 27 7 3.4646 -0.7242 0.0015 28 8 2.3029 -1.0735 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.5987 0.8371 -0.5121 33 1 4.6351 2.3337 -0.5125 34 1 6.7130 2.5993 -0.5706 35 1 8.7585 3.9274 -0.2578 36 1 9.5619 4.4453 2.0073 37 1 10.0503 4.7613 3.7477 38 1 11.2310 3.8165 7.3969 39 1 10.2718 2.6818 6.4172 40 1 11.7315 3.4352 5.7316 41 1 11.6246 6.2095 8.9535 42 1 6.2356 2.3059 3.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179213353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:37 Heat of formation + Delta-G solvation = -0.869547 kcal Electronic energy + Delta-G solvation = -26425.087741 eV Core-core repulsion = 22373.219257 eV Total energy + Delta-G solvation = -4051.868483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.81427 -41.56291 -40.52967 -38.39862 -37.02554 -36.78563 -34.76714 -34.41233 -32.42512 -31.80067 -30.34415 -29.88570 -29.15418 -27.36428 -25.47376 -24.70897 -23.54264 -23.06903 -22.34371 -21.26255 -20.08868 -19.33141 -18.76779 -18.38310 -17.60456 -17.35884 -17.12784 -16.97155 -16.75624 -16.13625 -15.89930 -15.67182 -15.11831 -14.97259 -14.70686 -14.48008 -14.20772 -14.18647 -13.87724 -13.76297 -13.61128 -13.06144 -13.04840 -12.99795 -12.88562 -12.74800 -12.68302 -12.37289 -12.28022 -12.17168 -12.12997 -12.11294 -11.15002 -11.09850 -10.93122 -10.60291 -10.17228 -9.80280 -9.39231 -8.17910 -6.36198 -0.23628 -0.03305 0.32166 0.79445 1.45738 1.48521 1.56274 1.78242 1.87959 1.96533 2.31916 2.50515 2.71735 2.80999 2.86564 3.12560 3.63193 3.71118 3.81634 3.92172 4.04360 4.14239 4.16263 4.28089 4.43519 4.46566 4.58175 4.65487 4.71888 4.82867 4.88683 4.89002 5.05242 5.11878 5.12635 5.27107 5.31898 5.39139 5.52479 5.56739 5.66168 5.87617 6.05941 6.19098 6.69699 6.86069 6.98707 7.28407 7.44608 8.88593 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.001892 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.725155 B =14798.288977 C =15202.995221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.194 3.806 3 N -0.502 5.502 4 C 0.153 3.847 5 C 0.150 3.850 6 O -0.332 6.332 7 C 0.117 3.883 8 C -0.172 4.172 9 C -0.070 4.070 10 C -0.118 4.118 11 C -0.103 4.103 12 C 0.537 3.463 13 O -0.600 6.600 14 N -0.692 5.692 15 C 0.268 3.732 16 H -0.002 1.002 17 C -0.134 4.134 18 C -0.547 4.547 19 H 0.077 0.923 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.977 3.023 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.261 1.261 26 C -0.118 4.118 27 N -0.386 5.386 28 O 0.084 5.916 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.149 0.851 37 H 0.407 0.593 38 H 0.069 0.931 39 H 0.009 0.991 40 H 0.044 0.956 41 H 0.266 0.734 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 -9.447 -25.917 32.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 N -0.237 5.237 4 C -0.119 4.119 5 C 0.074 3.926 6 O -0.246 6.246 7 C 0.072 3.928 8 C -0.190 4.190 9 C -0.088 4.088 10 C -0.137 4.137 11 C -0.106 4.106 12 C 0.325 3.675 13 O -0.483 6.483 14 N -0.341 5.341 15 C 0.165 3.835 16 H 0.016 0.984 17 C -0.193 4.193 18 C -0.585 4.585 19 H 0.095 0.905 20 C -0.187 4.187 21 N -0.556 5.556 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.186 1.186 26 C -0.138 4.138 27 N -0.094 5.094 28 O 0.021 5.979 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.166 0.834 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.520 -9.832 -24.872 31.435 hybrid contribution 0.504 0.596 0.634 1.006 sum -16.015 -9.236 -24.238 30.484 Atomic orbital electron populations 1.20841 0.76000 1.07611 1.07574 1.29960 1.00599 0.79237 0.92773 1.71915 1.00163 1.30159 1.21462 1.25485 0.95394 0.88285 1.02772 1.20897 0.89368 0.99664 0.82673 1.86041 1.40287 1.69059 1.29179 1.18676 0.86674 0.93684 0.93774 1.21814 0.97307 1.01434 0.98453 1.21360 0.94905 0.95191 0.97295 1.21585 1.00313 1.00006 0.91794 1.19675 0.96826 1.01427 0.92704 1.18873 0.80977 0.78403 0.89234 1.90698 1.58688 1.55307 1.43582 1.46181 1.24960 1.52062 1.10861 1.18441 0.92550 0.93758 0.78778 0.98402 1.21906 0.98583 0.95944 1.02835 1.21482 1.32195 1.09339 0.95524 0.90470 1.25862 0.97427 1.00775 0.94685 1.70061 1.45072 1.41039 0.99451 0.85323 0.78791 0.78527 0.77240 1.19536 1.21279 1.18592 1.20316 0.96857 1.00780 0.95868 1.74658 0.98788 1.15882 1.20036 1.85281 1.10997 1.36311 1.65298 0.85225 0.85853 0.86898 0.86709 0.86140 0.81058 0.80370 0.83370 0.75632 0.91209 0.97215 0.93722 0.92500 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 10.51 71.24 0.75 0.64 16 2 C 0.19 2.68 8.51 88.38 0.75 3.43 16 3 N -0.50 -10.22 11.55 -303.20 -3.50 -13.72 16 4 C 0.15 3.35 7.85 138.46 1.09 4.44 16 5 C 0.15 2.71 5.36 71.23 0.38 3.09 16 6 O -0.33 -8.80 10.12 -92.42 -0.93 -9.74 16 7 C 0.12 3.06 6.68 22.47 0.15 3.21 16 8 C -0.17 -3.03 9.03 22.42 0.20 -2.82 16 9 C -0.07 -1.18 10.03 22.22 0.22 -0.96 16 10 C -0.12 -2.88 9.54 22.54 0.21 -2.67 16 11 C -0.10 -3.55 5.87 -20.10 -0.12 -3.66 16 12 C 0.54 24.10 7.74 86.79 0.67 24.78 16 13 O -0.60 -32.72 16.01 -3.89 -0.06 -32.78 16 14 N -0.69 -30.42 5.02 -448.98 -2.25 -32.67 16 15 C 0.27 14.43 2.56 44.24 0.11 14.55 16 16 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 17 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 18 C -0.55 -29.27 8.73 25.60 0.22 -29.05 16 19 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 20 C 0.01 0.68 5.30 84.65 0.45 1.13 16 21 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 22 Si 0.98 42.03 29.54 68.60 2.03 44.05 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C -0.12 -4.03 9.53 22.63 0.22 -3.82 16 27 N -0.39 -8.79 12.16 -60.33 -0.73 -9.52 16 28 O 0.08 1.50 11.31 74.86 0.85 2.34 16 29 H 0.13 -0.37 8.14 -2.39 -0.02 -0.38 16 30 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.12 1.50 7.64 -2.39 -0.02 1.48 16 33 H 0.12 1.55 7.67 -2.39 -0.02 1.54 16 34 H 0.17 1.57 6.28 -2.91 -0.02 1.55 16 35 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 3.07 6.40 -2.91 -0.02 3.05 16 37 H 0.41 14.61 6.57 -92.71 -0.61 14.00 16 38 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.11 4.38 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -82.62 365.52 2.08 -80.54 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.47 Total: 18.74 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.98 Total: 5.91 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -6.25 Total: -109.07 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.15 Total: -40.18 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -82.62 2.08 -80.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179213353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.669 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds