Wall clock time and date at job start Tue Mar 31 2020 16:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47473 * 55.00192 * 3 2 1 5 5 C 1.50700 * 109.47166 * 175.00225 * 3 2 1 6 6 H 1.07998 * 120.00204 * 119.99712 * 5 3 2 7 7 C 1.37879 * 120.00058 * 300.00308 * 5 3 2 8 8 N 1.31515 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00161 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46891 * 89.99497 * 9 7 5 11 11 H 1.48500 * 109.47021 * 209.99617 * 9 7 5 12 12 H 1.48500 * 109.46994 * 330.00154 * 9 7 5 13 13 N 1.46506 * 109.47295 * 295.00324 * 3 2 1 14 14 C 1.34765 * 120.00240 * 84.99921 * 13 3 2 15 15 O 1.21285 * 120.00037 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00345 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47339 * 180.02562 * 16 14 13 18 18 C 1.34247 * 126.50120 * 264.98118 * 17 16 14 19 19 N 1.36831 * 109.92819 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.05885 * 179.97438 * 19 18 17 21 21 C 1.37687 * 109.87412 * 0.26491 * 19 18 17 22 22 C 1.39129 * 133.50249 * 180.45897 * 21 19 18 23 23 C 1.37744 * 119.77775 * 179.56871 * 22 21 19 24 24 C 1.38834 * 120.66809 * 359.71848 * 23 22 21 25 25 N 1.48018 * 119.73550 * 180.02562 * 24 23 22 26 26 O 1.21804 * 119.99780 * 180.02562 * 25 24 23 27 27 O 1.21799 * 119.99817 * 0.02562 * 25 24 23 28 28 C 1.36625 * 120.52641 * 0.02562 * 24 23 22 29 29 C 1.39630 * 119.76691 * 359.97438 * 28 24 23 30 30 H 1.09004 * 109.46575 * 299.99845 * 1 2 3 31 31 H 1.08996 * 109.47116 * 59.99282 * 1 2 3 32 32 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47097 * 240.00211 * 2 1 3 34 34 H 1.08998 * 109.47467 * 120.00028 * 2 1 3 35 35 H 0.96997 * 120.00587 * 179.97438 * 8 7 5 36 36 H 0.96996 * 119.99454 * 265.00333 * 13 3 2 37 37 H 1.09000 * 109.46444 * 60.00292 * 16 14 13 38 38 H 1.08994 * 109.47185 * 300.00431 * 16 14 13 39 39 H 1.07993 * 125.03206 * 0.02562 * 18 17 16 40 40 H 1.07997 * 120.10674 * 359.30502 * 22 21 19 41 41 H 1.08001 * 119.66567 * 179.69420 * 23 22 21 42 42 H 1.08004 * 120.11618 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0051 0.8800 1.3810 10 1 6.4429 2.1129 2.0835 11 1 6.4391 -0.3111 2.1544 12 1 6.6131 0.8395 0.0268 13 7 1.6524 2.0976 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0366 3.3388 -2.6544 17 6 -1.3609 3.8871 -2.5226 18 6 -2.4960 3.2807 -2.9047 19 7 -3.5694 4.0825 -2.6271 20 1 -4.4948 3.8590 -2.8131 21 6 -3.1398 5.2567 -2.0503 22 6 -3.7972 6.3878 -1.5770 23 6 -3.0707 7.4233 -1.0317 24 6 -1.6872 7.3482 -0.9437 25 7 -0.9270 8.4728 -0.3534 26 8 0.2870 8.4122 -0.2743 27 8 -1.5154 9.4587 0.0531 28 6 -1.0218 6.2447 -1.3976 29 6 -1.7383 5.1833 -1.9540 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0612 2.9498 36 1 2.2719 2.1232 -1.9977 37 1 0.0680 2.6146 -3.4685 38 1 0.7280 4.1542 -2.8666 39 1 -2.5533 2.3046 -3.3631 40 1 -4.8731 6.4555 -1.6407 41 1 -3.5825 8.3026 -0.6693 42 1 0.0546 6.1931 -1.3255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183811541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:48 Heat of formation + Delta-G solvation = 10.479467 kcal Electronic energy + Delta-G solvation = -27881.358359 eV Core-core repulsion = 23829.982005 eV Total energy + Delta-G solvation = -4051.376353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19706 -41.56469 -38.95135 -37.41664 -36.43199 -35.12964 -33.31720 -32.36591 -31.24849 -30.79129 -30.20708 -27.73342 -26.48867 -26.09992 -23.27758 -23.04424 -22.09236 -20.97430 -19.85118 -19.31971 -18.81756 -18.57416 -18.08377 -17.39870 -17.05317 -16.54603 -15.76449 -15.26396 -15.16303 -14.77656 -14.66256 -14.38215 -14.18296 -13.66704 -13.32944 -13.04153 -12.89140 -12.60740 -12.44094 -12.29075 -11.70044 -11.53179 -11.40406 -11.26720 -11.20279 -11.08481 -11.02301 -10.95346 -10.83316 -10.32861 -10.22814 -10.12941 -9.64983 -9.07674 -9.00162 -8.89916 -8.49344 -8.09059 -7.81737 -6.11960 -4.21372 -0.01935 0.65377 1.47342 1.52423 2.29431 2.66160 3.25932 3.27576 3.32881 3.33868 3.40485 4.11793 4.17776 4.32347 4.41777 4.56514 4.60538 4.82539 5.01391 5.06532 5.19045 5.19815 5.37723 5.50266 5.55944 5.66382 5.68304 5.89530 5.98922 6.28810 6.34706 6.41218 6.43143 6.60665 6.62563 6.99701 7.06235 7.17482 7.34801 7.45574 7.61636 7.73151 7.76900 7.90341 8.17883 8.67755 8.78747 9.15306 9.46451 10.93356 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003330 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.877585 B = 8407.237673 C =10043.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.541 6.541 16 C -0.078 4.078 17 C -0.115 4.115 18 C 0.062 3.938 19 N -0.582 5.582 20 H 0.422 0.578 21 C 0.135 3.865 22 C -0.122 4.122 23 C -0.054 4.054 24 C -0.072 4.072 25 N 0.037 4.963 26 O -0.166 6.166 27 O -0.174 6.174 28 C 0.017 3.983 29 C -0.096 4.096 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.020 0.980 33 H 0.030 0.970 34 H 0.098 0.902 35 H 0.264 0.736 36 H 0.388 0.612 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.179 0.821 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 7.068 -13.804 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.420 6.420 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.063 4.063 19 N -0.184 5.184 20 H 0.259 0.741 21 C 0.024 3.976 22 C -0.143 4.143 23 C -0.074 4.074 24 C -0.157 4.157 25 N 0.554 4.446 26 O -0.381 6.381 27 O -0.387 6.387 28 C -0.002 4.002 29 C -0.102 4.102 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.196 0.804 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.064 6.313 -13.242 21.755 hybrid contribution 1.065 0.025 -0.076 1.068 sum -14.999 6.337 -13.319 21.036 Atomic orbital electron populations 1.21825 0.98471 0.97819 1.01143 1.21929 0.92488 0.99944 1.02229 1.18755 0.94163 0.89061 0.81092 0.93423 1.21240 0.90758 1.38966 1.06310 0.92061 1.24884 0.98593 0.94790 0.95381 1.69890 1.35148 1.37658 1.09327 0.86470 0.84888 0.77680 0.78203 1.20491 1.21125 1.19838 1.46495 1.14610 1.56112 1.18542 1.20250 0.82874 0.79594 0.88957 1.90688 1.51416 1.59480 1.40389 1.20152 0.92631 1.01059 0.98086 1.19684 0.94569 0.93056 1.04829 1.21697 0.84963 0.96594 1.03066 1.41766 1.09507 1.14020 1.53095 0.74063 1.18441 0.93482 0.88482 0.97170 1.19876 0.99951 0.91342 1.03154 1.20474 0.90507 0.99477 0.96956 1.20383 0.92284 0.90462 1.12582 1.43547 1.01241 1.01610 0.98220 1.94568 0.95898 1.86898 1.60739 1.94489 1.71442 1.22365 1.50419 1.20129 1.01809 0.88627 0.89672 1.18750 0.91744 0.95333 1.04413 0.93286 0.94314 0.96039 0.95080 0.88370 0.92587 0.77992 0.88270 0.88391 0.80414 0.84070 0.82993 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.71 -13.67 5.02 -54.93 -0.28 -13.95 16 14 C 0.50 8.91 6.39 -10.99 -0.07 8.84 16 15 O -0.54 -11.81 13.17 5.55 0.07 -11.74 16 16 C -0.08 -0.95 6.23 -29.03 -0.18 -1.13 16 17 C -0.12 -1.39 4.81 -102.71 -0.49 -1.89 16 18 C 0.06 0.57 11.73 -16.73 -0.20 0.38 16 19 N -0.58 -4.64 6.07 -10.65 -0.06 -4.70 16 20 H 0.42 1.80 8.96 -40.82 -0.37 1.43 16 21 C 0.14 1.41 7.28 -83.99 -0.61 0.80 16 22 C -0.12 -1.08 10.08 -39.43 -0.40 -1.48 16 23 C -0.05 -0.57 9.52 -39.54 -0.38 -0.95 16 24 C -0.07 -0.98 6.81 -80.31 -0.55 -1.53 16 25 N 0.04 0.58 4.45 33.79 0.15 0.73 16 26 O -0.17 -2.84 18.40 -29.46 -0.54 -3.38 16 27 O -0.17 -2.70 18.42 -29.46 -0.54 -3.24 16 28 C 0.02 0.24 9.55 -39.64 -0.38 -0.14 16 29 C -0.10 -1.25 6.35 -105.14 -0.67 -1.92 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 31 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.39 6.38 8.54 -40.82 -0.35 6.03 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.15 1.33 7.58 -52.49 -0.40 0.93 16 42 H 0.15 2.13 7.57 -52.48 -0.40 1.74 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -33.62 361.08 -9.44 -43.07 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.99 Total: 7.02 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.30 Total: -10.76 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.44 Total: -41.92 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.01 Total: -18.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.62 -9.44 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183811541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.545 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds