Wall clock time and date at job start Tue Mar 31 2020 16:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47473 * 55.00192 * 3 2 1 5 5 C 1.50700 * 109.47166 * 175.00225 * 3 2 1 6 6 H 1.07998 * 120.00204 * 119.99712 * 5 3 2 7 7 C 1.37879 * 120.00058 * 300.00308 * 5 3 2 8 8 N 1.31515 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00161 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46891 * 89.99497 * 9 7 5 11 11 H 1.48500 * 109.47021 * 209.99617 * 9 7 5 12 12 H 1.48500 * 109.46994 * 330.00154 * 9 7 5 13 13 N 1.46506 * 109.47295 * 295.00324 * 3 2 1 14 14 C 1.34765 * 120.00240 * 84.99921 * 13 3 2 15 15 O 1.21285 * 120.00037 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00345 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47339 * 180.02562 * 16 14 13 18 18 C 1.34247 * 126.50120 * 264.98118 * 17 16 14 19 19 N 1.36831 * 109.92819 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.05885 * 179.97438 * 19 18 17 21 21 C 1.37687 * 109.87412 * 0.26491 * 19 18 17 22 22 C 1.39129 * 133.50249 * 180.45897 * 21 19 18 23 23 C 1.37744 * 119.77775 * 179.56871 * 22 21 19 24 24 C 1.38834 * 120.66809 * 359.71848 * 23 22 21 25 25 N 1.48018 * 119.73550 * 180.02562 * 24 23 22 26 26 O 1.21804 * 119.99780 * 180.02562 * 25 24 23 27 27 O 1.21799 * 119.99817 * 0.02562 * 25 24 23 28 28 C 1.36625 * 120.52641 * 0.02562 * 24 23 22 29 29 C 1.39630 * 119.76691 * 359.97438 * 28 24 23 30 30 H 1.09004 * 109.46575 * 299.99845 * 1 2 3 31 31 H 1.08996 * 109.47116 * 59.99282 * 1 2 3 32 32 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47097 * 240.00211 * 2 1 3 34 34 H 1.08998 * 109.47467 * 120.00028 * 2 1 3 35 35 H 0.96997 * 120.00587 * 179.97438 * 8 7 5 36 36 H 0.96996 * 119.99454 * 265.00333 * 13 3 2 37 37 H 1.09000 * 109.46444 * 60.00292 * 16 14 13 38 38 H 1.08994 * 109.47185 * 300.00431 * 16 14 13 39 39 H 1.07993 * 125.03206 * 0.02562 * 18 17 16 40 40 H 1.07997 * 120.10674 * 359.30502 * 22 21 19 41 41 H 1.08001 * 119.66567 * 179.69420 * 23 22 21 42 42 H 1.08004 * 120.11618 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0051 0.8800 1.3810 10 1 6.4429 2.1129 2.0835 11 1 6.4391 -0.3111 2.1544 12 1 6.6131 0.8395 0.0268 13 7 1.6524 2.0976 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0366 3.3388 -2.6544 17 6 -1.3609 3.8871 -2.5226 18 6 -2.4960 3.2807 -2.9047 19 7 -3.5694 4.0825 -2.6271 20 1 -4.4948 3.8590 -2.8131 21 6 -3.1398 5.2567 -2.0503 22 6 -3.7972 6.3878 -1.5770 23 6 -3.0707 7.4233 -1.0317 24 6 -1.6872 7.3482 -0.9437 25 7 -0.9270 8.4728 -0.3534 26 8 0.2870 8.4122 -0.2743 27 8 -1.5154 9.4587 0.0531 28 6 -1.0218 6.2447 -1.3976 29 6 -1.7383 5.1833 -1.9540 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0612 2.9498 36 1 2.2719 2.1232 -1.9977 37 1 0.0680 2.6146 -3.4685 38 1 0.7280 4.1542 -2.8666 39 1 -2.5533 2.3046 -3.3631 40 1 -4.8731 6.4555 -1.6407 41 1 -3.5825 8.3026 -0.6693 42 1 0.0546 6.1931 -1.3255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183811541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:45 Heat of formation + Delta-G solvation = -11.030552 kcal Electronic energy + Delta-G solvation = -27882.291103 eV Core-core repulsion = 23829.982005 eV Total energy + Delta-G solvation = -4052.309098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.27849 -42.47034 -40.46114 -38.28402 -37.65004 -36.89793 -34.32642 -34.18094 -32.80102 -31.85045 -31.20376 -29.20024 -27.89281 -27.18402 -24.95103 -24.09608 -23.05034 -22.42923 -21.19371 -20.80198 -19.86475 -19.68844 -19.05127 -18.64321 -18.58099 -17.38665 -17.34106 -17.07640 -16.37469 -16.01982 -15.67984 -15.59396 -15.19050 -14.77067 -14.60087 -14.43330 -14.18910 -13.78432 -13.72225 -13.46065 -13.17263 -13.14351 -12.85186 -12.80858 -12.69678 -12.61587 -12.29958 -12.26991 -12.15646 -12.14379 -11.98905 -11.54457 -11.07015 -11.00896 -10.58879 -10.43283 -9.74041 -9.53116 -8.90807 -8.15288 -6.32202 -1.13560 -0.15488 0.42564 0.46493 1.43810 1.44963 1.48324 1.55063 1.97849 2.00555 2.36110 2.41300 2.91103 3.14565 3.29418 3.50062 3.71581 3.84658 3.98994 4.16356 4.22645 4.38268 4.48918 4.52150 4.56924 4.61355 4.67064 4.71275 4.81046 4.82387 5.06181 5.09728 5.11623 5.29000 5.36507 5.45685 5.48010 5.59522 5.69652 5.76392 5.84328 5.99046 6.21290 6.50814 6.53370 6.77902 7.11938 7.36266 7.72806 8.89664 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003330 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.877585 B = 8407.237673 C =10043.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.010 1.010 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.258 1.258 13 N -0.710 5.710 14 C 0.495 3.505 15 O -0.584 6.584 16 C -0.063 4.063 17 C -0.160 4.160 18 C 0.089 3.911 19 N -0.562 5.562 20 H 0.443 0.557 21 C 0.133 3.867 22 C -0.099 4.099 23 C -0.062 4.062 24 C -0.086 4.086 25 N 0.038 4.962 26 O -0.227 6.227 27 O -0.158 6.158 28 C -0.008 4.008 29 C -0.120 4.120 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.216 0.784 40 H 0.188 0.812 41 H 0.173 0.827 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 6.252 -16.610 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.008 0.992 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.182 1.182 13 N -0.359 5.359 14 C 0.282 3.718 15 O -0.465 6.465 16 C -0.103 4.103 17 C -0.166 4.166 18 C -0.037 4.037 19 N -0.165 5.165 20 H 0.285 0.715 21 C 0.020 3.980 22 C -0.119 4.119 23 C -0.083 4.083 24 C -0.172 4.172 25 N 0.549 4.451 26 O -0.428 6.428 27 O -0.379 6.379 28 C -0.028 4.028 29 C -0.126 4.126 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.238 0.762 37 H 0.158 0.842 38 H 0.126 0.874 39 H 0.233 0.767 40 H 0.205 0.795 41 H 0.190 0.810 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.258 5.476 -16.109 24.957 hybrid contribution 1.561 0.262 0.769 1.760 sum -16.697 5.739 -15.340 23.389 Atomic orbital electron populations 1.21645 0.96741 0.98964 1.00321 1.21754 0.93959 0.99015 1.01155 1.18272 0.93257 0.89236 0.81674 0.99200 1.21640 0.91816 1.38535 1.06587 0.91080 1.25749 1.03106 0.94516 0.95127 1.70050 1.36962 1.38588 1.09859 0.85438 0.79489 0.77283 0.78698 1.20824 1.20939 1.18206 1.46270 1.15913 1.56408 1.17311 1.21298 0.81504 0.78406 0.90567 1.90666 1.52512 1.60772 1.42532 1.20066 0.93252 1.01643 0.95305 1.19827 0.95434 0.93594 1.07744 1.22273 0.84146 0.97091 1.00208 1.41800 1.10553 1.12729 1.51434 0.71464 1.18657 0.92575 0.89665 0.97066 1.20343 1.01880 0.89484 1.00216 1.20810 0.89002 1.01031 0.97456 1.20646 0.93373 0.89607 1.13530 1.43911 1.01141 1.02116 0.97897 1.94565 0.97024 1.87747 1.63454 1.94429 1.71126 1.22905 1.49421 1.20090 1.01186 0.89891 0.91664 1.19047 0.93342 0.95542 1.04697 0.96305 0.92854 0.93729 0.93787 0.91582 0.92750 0.76163 0.84237 0.87431 0.76699 0.79452 0.80986 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.52 71.98 0.61 -4.50 16 2 C -0.12 -5.75 5.45 30.60 0.17 -5.58 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H -0.01 -0.61 7.58 -2.39 -0.02 -0.63 16 5 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.71 -27.46 5.02 -446.10 -2.24 -29.70 16 14 C 0.49 17.59 6.39 87.66 0.56 18.15 16 15 O -0.58 -26.05 13.17 -3.04 -0.04 -26.09 16 16 C -0.06 -1.40 6.23 29.10 0.18 -1.22 16 17 C -0.16 -3.54 4.81 -18.63 -0.09 -3.63 16 18 C 0.09 1.28 11.73 83.00 0.97 2.25 16 19 N -0.56 -6.45 6.07 -187.60 -1.14 -7.59 16 20 H 0.44 1.37 8.96 -92.71 -0.83 0.54 16 21 C 0.13 2.37 7.28 39.03 0.28 2.66 16 22 C -0.10 -1.40 10.08 22.37 0.23 -1.17 16 23 C -0.06 -1.22 9.52 22.30 0.21 -1.00 16 24 C -0.09 -2.41 6.81 36.14 0.25 -2.17 16 25 N 0.04 1.26 4.45 -47.02 -0.21 1.05 16 26 O -0.23 -8.52 18.40 18.88 0.35 -8.17 16 27 O -0.16 -5.00 18.42 18.89 0.35 -4.65 16 28 C -0.01 -0.24 9.55 22.23 0.21 -0.03 16 29 C -0.12 -3.02 6.35 -20.20 -0.13 -3.15 16 30 H 0.02 0.88 7.85 -2.38 -0.02 0.86 16 31 H 0.05 2.10 5.64 -2.39 -0.01 2.08 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.07 3.62 5.95 -2.39 -0.01 3.60 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.40 12.94 8.54 -92.71 -0.79 12.15 16 37 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.17 2.59 7.58 -2.91 -0.02 2.56 16 42 H 0.13 4.18 7.57 -2.91 -0.02 4.16 16 Total: -1.00 -79.83 361.08 3.04 -76.79 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.53 Total: 19.14 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.23 Total: -12.66 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -3.35 Total: -89.00 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: 0.66 Total: -38.91 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -79.83 3.04 -76.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183811541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.762 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds