Wall clock time and date at job start Tue Mar 31 2020 16:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 H 1.09003 * 109.46653 * 54.99918 * 3 2 1 5 5 C 1.50702 * 109.47349 * 174.99784 * 3 2 1 6 6 H 1.07999 * 119.99585 * 120.00107 * 5 3 2 7 7 C 1.37874 * 119.99815 * 300.00139 * 5 3 2 8 8 N 1.31514 * 119.99512 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00403 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46663 * 89.99953 * 9 7 5 11 11 H 1.48496 * 109.47516 * 209.99863 * 9 7 5 12 12 H 1.48498 * 109.47030 * 330.00428 * 9 7 5 13 13 O 1.45197 * 109.47281 * 295.00463 * 3 2 1 14 14 C 1.34229 * 117.00511 * 89.99261 * 13 3 2 15 15 O 1.20824 * 119.99423 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00050 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46961 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46961 * 180.02562 * 17 16 14 19 19 N 1.30973 * 126.44459 * 90.00399 * 18 17 16 20 20 C 1.35201 * 105.58370 * 179.97438 * 19 18 17 21 21 C 1.48483 * 126.41234 * 179.97438 * 20 19 18 22 22 C 1.39248 * 119.72034 * 179.72462 * 21 20 19 23 23 C 1.38464 * 119.07110 * 179.75223 * 22 21 20 24 24 C 1.38730 * 118.49933 * 0.50921 * 23 22 21 25 25 C 1.38315 * 119.35040 * 359.73122 * 24 23 22 26 26 N 1.31719 * 120.88650 * 0.02562 * 25 24 23 27 27 N 1.30725 * 107.17920 * 359.97438 * 20 19 18 28 28 O 1.21297 * 110.10627 * 0.02562 * 27 20 19 29 29 H 1.08997 * 109.47164 * 300.00071 * 1 2 3 30 30 H 1.09004 * 109.47133 * 59.99965 * 1 2 3 31 31 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47614 * 240.00457 * 2 1 3 33 33 H 1.08998 * 109.47337 * 119.99648 * 2 1 3 34 34 H 0.97004 * 119.99825 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47322 * 60.00240 * 16 14 13 36 36 H 1.09000 * 109.47276 * 300.00544 * 16 14 13 37 37 H 1.09006 * 109.46997 * 60.00445 * 17 16 14 38 38 H 1.08995 * 109.47073 * 300.00171 * 17 16 14 39 39 H 1.08005 * 120.46367 * 359.97438 * 22 21 20 40 40 H 1.08008 * 120.74844 * 180.26342 * 23 22 21 41 41 H 1.08002 * 120.32635 * 179.70664 * 24 23 22 42 42 H 1.07998 * 119.56244 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4538 0.8806 1.3363 9 14 3.0963 0.1101 2.5708 10 1 2.8745 -1.3260 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 8 1.6558 2.0918 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0068 3.4217 -2.5087 17 6 -1.3614 4.0594 -2.2591 18 6 -1.8274 4.7551 -3.5120 19 7 -2.5395 4.2270 -4.4761 20 6 -2.7152 5.2158 -5.3813 21 6 -3.4605 5.1164 -6.6617 22 6 -3.5595 6.2305 -7.4912 23 6 -4.2533 6.1213 -8.6845 24 6 -4.8345 4.9026 -9.0031 25 6 -4.7006 3.8386 -8.1296 26 7 -4.0308 3.9689 -7.0029 27 7 -2.1062 6.2758 -4.9183 28 8 -1.5925 6.0274 -3.8480 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4821 2.1130 35 1 -0.0721 2.6971 -3.3191 36 1 0.7238 4.1958 -2.7821 37 1 -1.2820 4.7842 -1.4487 38 1 -2.0784 3.2855 -1.9854 39 1 -3.0985 7.1657 -7.2093 40 1 -4.3433 6.9670 -9.3503 41 1 -5.3864 4.7858 -9.9241 42 1 -5.1521 2.8884 -8.3740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187900426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:22 Heat of formation + Delta-G solvation = 19.886605 kcal Electronic energy + Delta-G solvation = -26771.854498 eV Core-core repulsion = 22720.886069 eV Total energy + Delta-G solvation = -4050.968429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.85493 -40.57419 -39.99503 -36.55898 -36.13019 -34.73481 -33.63957 -33.04127 -32.27258 -31.90464 -30.86882 -27.95956 -26.20393 -25.67578 -24.14751 -23.23784 -22.82671 -21.78358 -21.02230 -19.72567 -18.52884 -18.26984 -17.45399 -17.20419 -16.69646 -16.40021 -16.27848 -16.08057 -15.84502 -14.79367 -14.62762 -14.57967 -14.42272 -13.81709 -13.57649 -13.52122 -13.08220 -12.91107 -12.61782 -12.41275 -12.30225 -12.12204 -11.98559 -11.71526 -11.47786 -11.39924 -11.32227 -11.22699 -10.77351 -10.65825 -10.38879 -10.10220 -10.00664 -9.97311 -9.64900 -9.54060 -9.37708 -9.10763 -8.67807 -6.24925 -4.27618 0.09449 0.72384 0.97302 2.03741 2.43198 2.72895 2.86731 3.17143 3.29577 3.30757 3.32720 3.37682 3.56785 4.23107 4.24288 4.31702 4.41020 4.49688 4.56301 4.66885 4.82471 4.88301 5.04292 5.10746 5.20180 5.34284 5.46792 5.49381 5.53922 5.59902 5.71909 5.74411 5.79739 5.89586 5.97438 6.07171 6.41043 6.55190 6.64370 6.70491 7.03246 7.32832 7.38576 7.49285 7.81896 8.17394 8.52963 8.82185 9.31775 10.86968 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.002022 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.760285 B =13842.786435 C =14123.733178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.197 3.803 4 H 0.048 0.952 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.887 5.887 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.338 6.338 14 C 0.458 3.542 15 O -0.517 6.517 16 C -0.116 4.116 17 C -0.016 4.016 18 C 0.193 3.807 19 N -0.447 5.447 20 C 0.212 3.788 21 C 0.198 3.802 22 C -0.135 4.135 23 C -0.075 4.075 24 C -0.159 4.159 25 C 0.105 3.895 26 N -0.446 5.446 27 N -0.367 5.367 28 O 0.091 5.909 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.269 0.731 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.367 9.488 -18.140 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.144 3.856 4 H 0.066 0.934 5 C -0.564 4.564 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.253 6.253 14 C 0.301 3.699 15 O -0.407 6.407 16 C -0.155 4.155 17 C -0.055 4.055 18 C -0.028 4.028 19 N -0.179 5.179 20 C -0.059 4.059 21 C 0.061 3.939 22 C -0.157 4.157 23 C -0.100 4.100 24 C -0.179 4.179 25 C -0.054 4.054 26 N -0.156 5.156 27 N -0.073 5.073 28 O 0.027 5.973 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.486 9.137 -17.767 28.615 hybrid contribution -0.428 0.114 0.348 0.564 sum -20.914 9.252 -17.419 28.747 Atomic orbital electron populations 1.21898 0.96901 1.00103 1.01777 1.22369 0.94425 0.99575 1.02272 1.21008 0.96351 0.88116 0.80168 0.93404 1.20792 0.87729 1.40001 1.07882 0.89489 1.24743 0.94967 0.95276 0.97406 1.69838 1.08500 1.44215 1.29817 0.86989 0.80987 0.80133 0.81254 1.19944 1.21700 1.18458 1.86499 1.34053 1.62162 1.42604 1.22973 0.80833 0.76960 0.89140 1.90632 1.55514 1.58750 1.35844 1.21256 0.95984 1.01750 0.96472 1.20074 0.97453 1.00212 0.87795 1.28857 0.93737 0.81948 0.98274 1.72172 1.16134 1.28276 1.01295 1.23400 1.00032 0.85674 0.96764 1.17846 0.95874 0.90444 0.89773 1.22047 0.99548 0.99389 0.94689 1.21583 0.94597 0.98230 0.95633 1.22379 1.00266 0.93954 1.01345 1.22866 0.94524 0.99332 0.88634 1.67504 1.06534 1.24076 1.17482 1.74865 1.12829 1.22620 0.96936 1.85317 1.55078 1.29962 1.26935 0.92491 0.93521 0.93922 0.91203 0.91787 0.92046 0.87084 0.87050 0.86543 0.85890 0.83829 0.83849 0.83981 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.57 37.15 0.32 -2.50 16 2 C -0.15 -3.26 5.15 -26.73 -0.14 -3.40 16 3 C 0.20 4.75 1.84 -27.88 -0.05 4.70 16 4 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16 5 C -0.53 -14.70 9.48 -34.44 -0.33 -15.03 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 9 Si 0.88 21.21 24.41 -169.99 -4.15 17.06 16 10 H -0.27 -6.35 6.83 56.52 0.39 -5.96 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 13 O -0.34 -7.18 9.81 -39.26 -0.38 -7.56 16 14 C 0.46 7.91 6.41 36.01 0.23 8.14 16 15 O -0.52 -9.79 13.13 -18.75 -0.25 -10.04 16 16 C -0.12 -1.37 5.79 -27.88 -0.16 -1.54 16 17 C -0.02 -0.17 5.13 -27.88 -0.14 -0.31 16 18 C 0.19 2.21 7.75 -12.99 -0.10 2.11 16 19 N -0.45 -6.06 11.56 -9.88 -0.11 -6.18 16 20 C 0.21 2.77 7.90 -156.14 -1.23 1.54 16 21 C 0.20 2.30 6.75 -82.93 -0.56 1.74 16 22 C -0.13 -1.15 9.73 -39.12 -0.38 -1.53 16 23 C -0.07 -0.43 10.17 -39.32 -0.40 -0.83 16 24 C -0.16 -0.86 10.11 -39.37 -0.40 -1.25 16 25 C 0.11 0.80 11.18 -17.57 -0.20 0.60 16 26 N -0.45 -5.17 10.29 -9.76 -0.10 -5.27 16 27 N -0.37 -4.59 11.83 30.96 0.37 -4.23 16 28 O 0.09 1.06 11.29 18.02 0.20 1.26 16 29 H 0.06 1.11 7.80 -51.93 -0.40 0.70 16 30 H 0.05 0.83 6.06 -51.93 -0.31 0.52 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.46 3.22 -51.93 -0.17 1.29 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.12 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.12 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.14 1.08 7.86 -52.48 -0.41 0.67 16 40 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 41 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -33.91 358.61 -6.91 -40.82 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.03 Total: -0.33 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.64 Total: -5.42 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.93 Total: -41.20 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.43 Total: -16.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.91 -6.91 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187900426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.708 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds