Wall clock time and date at job start Tue Mar 31 2020 16:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 H 1.09003 * 109.46653 * 54.99918 * 3 2 1 5 5 C 1.50702 * 109.47349 * 174.99784 * 3 2 1 6 6 H 1.07999 * 119.99585 * 120.00107 * 5 3 2 7 7 C 1.37874 * 119.99815 * 300.00139 * 5 3 2 8 8 N 1.31514 * 119.99512 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00403 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46663 * 89.99953 * 9 7 5 11 11 H 1.48496 * 109.47516 * 209.99863 * 9 7 5 12 12 H 1.48498 * 109.47030 * 330.00428 * 9 7 5 13 13 O 1.45197 * 109.47281 * 295.00463 * 3 2 1 14 14 C 1.34229 * 117.00511 * 89.99261 * 13 3 2 15 15 O 1.20824 * 119.99423 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00050 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46961 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46961 * 180.02562 * 17 16 14 19 19 N 1.30973 * 126.44459 * 90.00399 * 18 17 16 20 20 C 1.35201 * 105.58370 * 179.97438 * 19 18 17 21 21 C 1.48483 * 126.41234 * 179.97438 * 20 19 18 22 22 C 1.39248 * 119.72034 * 179.72462 * 21 20 19 23 23 C 1.38464 * 119.07110 * 179.75223 * 22 21 20 24 24 C 1.38730 * 118.49933 * 0.50921 * 23 22 21 25 25 C 1.38315 * 119.35040 * 359.73122 * 24 23 22 26 26 N 1.31719 * 120.88650 * 0.02562 * 25 24 23 27 27 N 1.30725 * 107.17920 * 359.97438 * 20 19 18 28 28 O 1.21297 * 110.10627 * 0.02562 * 27 20 19 29 29 H 1.08997 * 109.47164 * 300.00071 * 1 2 3 30 30 H 1.09004 * 109.47133 * 59.99965 * 1 2 3 31 31 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47614 * 240.00457 * 2 1 3 33 33 H 1.08998 * 109.47337 * 119.99648 * 2 1 3 34 34 H 0.97004 * 119.99825 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47322 * 60.00240 * 16 14 13 36 36 H 1.09000 * 109.47276 * 300.00544 * 16 14 13 37 37 H 1.09006 * 109.46997 * 60.00445 * 17 16 14 38 38 H 1.08995 * 109.47073 * 300.00171 * 17 16 14 39 39 H 1.08005 * 120.46367 * 359.97438 * 22 21 20 40 40 H 1.08008 * 120.74844 * 180.26342 * 23 22 21 41 41 H 1.08002 * 120.32635 * 179.70664 * 24 23 22 42 42 H 1.07998 * 119.56244 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4538 0.8806 1.3363 9 14 3.0963 0.1101 2.5708 10 1 2.8745 -1.3260 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 8 1.6558 2.0918 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0068 3.4217 -2.5087 17 6 -1.3614 4.0594 -2.2591 18 6 -1.8274 4.7551 -3.5120 19 7 -2.5395 4.2270 -4.4761 20 6 -2.7152 5.2158 -5.3813 21 6 -3.4605 5.1164 -6.6617 22 6 -3.5595 6.2305 -7.4912 23 6 -4.2533 6.1213 -8.6845 24 6 -4.8345 4.9026 -9.0031 25 6 -4.7006 3.8386 -8.1296 26 7 -4.0308 3.9689 -7.0029 27 7 -2.1062 6.2758 -4.9183 28 8 -1.5925 6.0274 -3.8480 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4821 2.1130 35 1 -0.0721 2.6971 -3.3191 36 1 0.7238 4.1958 -2.7821 37 1 -1.2820 4.7842 -1.4487 38 1 -2.0784 3.2855 -1.9854 39 1 -3.0985 7.1657 -7.2093 40 1 -4.3433 6.9670 -9.3503 41 1 -5.3864 4.7858 -9.9241 42 1 -5.1521 2.8884 -8.3740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187900426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:20 Heat of formation + Delta-G solvation = -3.403131 kcal Electronic energy + Delta-G solvation = -26772.864417 eV Core-core repulsion = 22720.886069 eV Total energy + Delta-G solvation = -4051.978348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -46.76995 -41.50999 -41.15071 -38.02874 -37.13392 -35.72630 -35.48713 -33.91418 -33.60129 -33.02456 -31.66824 -29.79486 -27.33518 -26.43299 -24.96126 -24.58143 -23.94555 -22.97208 -22.21043 -21.26602 -19.53278 -19.13977 -19.06070 -18.45206 -17.85420 -17.64637 -17.35953 -17.03974 -16.79812 -16.34914 -15.77343 -15.30432 -15.24687 -15.15013 -14.83903 -14.72391 -14.11710 -14.04835 -13.89880 -13.80279 -13.58182 -13.31868 -13.12020 -13.06840 -12.97816 -12.87848 -12.53147 -12.32052 -12.23705 -11.99482 -11.62707 -11.48440 -11.45648 -11.21336 -11.09278 -10.97923 -10.70938 -10.60747 -10.01547 -8.42393 -6.50761 -0.59560 0.10386 0.23290 1.20272 1.25699 1.33150 1.33195 1.42777 1.49578 2.01465 2.18146 2.21576 2.63571 2.77336 2.90103 3.50663 3.65061 3.68120 3.90850 3.92576 3.97821 4.01328 4.08750 4.14605 4.22242 4.23811 4.36083 4.45766 4.50940 4.61997 4.63509 4.68917 4.83544 4.88346 4.98934 5.00442 5.04673 5.08263 5.12905 5.36815 5.40582 5.59387 5.72745 6.19175 6.53837 6.77792 6.92483 6.94597 7.14543 8.73390 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.002022 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.760285 B =13842.786435 C =14123.733178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.045 0.955 7 C 0.028 3.972 8 N -0.931 5.931 9 Si 0.939 3.061 10 H -0.254 1.254 11 H -0.286 1.286 12 H -0.250 1.250 13 O -0.355 6.355 14 C 0.456 3.544 15 O -0.531 6.531 16 C -0.104 4.104 17 C -0.007 4.007 18 C 0.202 3.798 19 N -0.473 5.473 20 C 0.204 3.796 21 C 0.158 3.842 22 C -0.139 4.139 23 C -0.071 4.071 24 C -0.140 4.140 25 C 0.091 3.909 26 N -0.486 5.486 27 N -0.377 5.377 28 O 0.090 5.910 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.274 0.726 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.157 9.422 -19.535 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.054 0.946 5 C -0.577 4.577 6 H 0.064 0.936 7 C -0.172 4.172 8 N -0.569 5.569 9 Si 0.764 3.236 10 H -0.179 1.179 11 H -0.213 1.213 12 H -0.174 1.174 13 O -0.271 6.271 14 C 0.300 3.700 15 O -0.422 6.422 16 C -0.142 4.142 17 C -0.046 4.046 18 C -0.018 4.018 19 N -0.206 5.206 20 C -0.067 4.067 21 C 0.022 3.978 22 C -0.161 4.161 23 C -0.096 4.096 24 C -0.160 4.160 25 C -0.067 4.067 26 N -0.197 5.197 27 N -0.083 5.083 28 O 0.028 5.972 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.197 0.803 41 H 0.200 0.800 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.289 9.087 -19.171 31.504 hybrid contribution 0.410 0.220 0.598 0.758 sum -22.879 9.307 -18.573 30.903 Atomic orbital electron populations 1.21821 0.94231 1.02018 1.01779 1.22279 0.96758 0.97537 1.01983 1.20655 0.93735 0.89795 0.81115 0.94583 1.21014 0.89989 1.39663 1.07036 0.93631 1.25589 0.96094 0.95679 0.99802 1.69969 1.10433 1.45559 1.30987 0.85991 0.79466 0.80175 0.77959 1.17915 1.21310 1.17448 1.86485 1.36438 1.63041 1.41140 1.23863 0.79315 0.76152 0.90639 1.90621 1.55493 1.59102 1.36952 1.21288 0.97071 1.02050 0.93789 1.20060 0.96409 1.00515 0.87614 1.28922 0.93097 0.81802 0.97987 1.72159 1.17192 1.29133 1.02115 1.23868 0.99942 0.85456 0.97423 1.18017 0.97813 0.91774 0.90203 1.22205 0.99906 0.98606 0.95407 1.22053 0.93092 0.99651 0.94803 1.22826 0.98691 0.92742 1.01789 1.23409 0.94075 1.01211 0.88050 1.67410 1.08018 1.24703 1.19591 1.74836 1.13439 1.22757 0.97254 1.85292 1.55067 1.30008 1.26840 0.93082 0.92917 0.91058 0.91101 0.92476 0.91664 0.85865 0.85192 0.85037 0.85573 0.83586 0.80299 0.79992 0.79487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.57 71.98 0.62 -4.35 16 2 C -0.15 -6.30 5.15 30.59 0.16 -6.14 16 3 C 0.20 9.72 1.84 29.85 0.05 9.77 16 4 H 0.04 1.83 6.21 -2.39 -0.01 1.81 16 5 C -0.54 -31.09 9.48 25.60 0.24 -30.85 16 6 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 7 C 0.03 1.60 5.45 84.65 0.46 2.06 16 8 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 9 Si 0.94 43.57 24.41 68.60 1.67 45.25 16 10 H -0.25 -10.95 6.83 99.48 0.68 -10.28 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 13 O -0.35 -15.11 9.81 -51.41 -0.50 -15.61 16 14 C 0.46 15.31 6.41 71.24 0.46 15.76 16 15 O -0.53 -19.45 13.13 21.97 0.29 -19.16 16 16 C -0.10 -2.31 5.79 29.85 0.17 -2.13 16 17 C -0.01 -0.14 5.13 29.85 0.15 0.01 16 18 C 0.20 4.52 7.75 88.36 0.68 5.21 16 19 N -0.47 -12.87 11.56 -302.54 -3.50 -16.37 16 20 C 0.20 5.41 7.90 137.33 1.09 6.50 16 21 C 0.16 3.69 6.75 42.00 0.28 3.97 16 22 C -0.14 -2.24 9.73 22.57 0.22 -2.02 16 23 C -0.07 -0.62 10.17 22.44 0.23 -0.39 16 24 C -0.14 -1.05 10.11 22.41 0.23 -0.82 16 25 C 0.09 1.24 11.18 84.73 0.95 2.18 16 26 N -0.49 -11.18 10.29 -184.80 -1.90 -13.08 16 27 N -0.38 -9.48 11.83 -59.17 -0.70 -10.19 16 28 O 0.09 2.09 11.29 74.55 0.84 2.93 16 29 H 0.05 1.85 7.80 -2.39 -0.02 1.83 16 30 H 0.05 1.76 6.06 -2.38 -0.01 1.75 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.06 2.50 3.22 -2.39 -0.01 2.49 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.13 2.14 8.10 -2.38 -0.02 2.12 16 38 H 0.13 2.40 8.10 -2.39 -0.02 2.38 16 39 H 0.15 2.13 7.86 -2.91 -0.02 2.11 16 40 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 41 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 42 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.98 358.61 3.47 -73.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.98 Total: 10.39 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.99 Total: -1.25 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.80 Total: -96.05 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: 0.63 Total: -31.85 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.25 kcal Total: -76.98 3.47 -73.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187900426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.111 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds