Wall clock time and date at job start Tue Mar 31 2020 16:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46864 * 2 1 4 4 H 1.09001 * 109.47027 * 305.58816 * 3 2 1 5 5 C 1.50700 * 109.47058 * 185.58582 * 3 2 1 6 6 H 1.08002 * 119.99968 * 274.99040 * 5 3 2 7 7 C 1.37880 * 119.99759 * 94.99805 * 5 3 2 8 8 N 1.31516 * 119.99841 * 184.84432 * 7 5 3 9 9 Si 1.86796 * 120.00056 * 4.83393 * 7 5 3 10 10 H 1.48507 * 109.46726 * 84.87356 * 9 7 5 11 11 H 1.48500 * 109.47171 * 204.86673 * 9 7 5 12 12 H 1.48497 * 109.47551 * 324.87308 * 9 7 5 13 13 O 1.45203 * 109.47065 * 65.58710 * 3 2 1 14 14 C 1.34230 * 117.00164 * 269.99855 * 13 3 2 15 15 O 1.20835 * 119.99610 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00135 * 180.02562 * 14 13 3 17 17 C 1.53007 * 109.46899 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46899 * 179.97438 * 17 16 14 19 19 N 1.30981 * 126.44170 * 89.99877 * 18 17 16 20 20 C 1.35207 * 105.57450 * 179.97438 * 19 18 17 21 21 C 1.48485 * 126.40573 * 179.97438 * 20 19 18 22 22 C 1.39253 * 119.71802 * 179.73449 * 21 20 19 23 23 C 1.38470 * 119.06678 * 179.75586 * 22 21 20 24 24 C 1.38731 * 118.50255 * 0.50363 * 23 22 21 25 25 C 1.38318 * 119.34815 * 359.73232 * 24 23 22 26 26 N 1.31710 * 120.88836 * 0.02562 * 25 24 23 27 27 N 1.30721 * 107.18402 * 0.02562 * 20 19 18 28 28 O 1.21287 * 110.10480 * 359.97438 * 27 20 19 29 29 H 1.08998 * 109.46998 * 60.00056 * 1 2 3 30 30 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47389 * 300.00024 * 1 2 3 32 32 H 1.09000 * 109.47389 * 239.99976 * 2 1 3 33 33 H 1.08998 * 109.46998 * 119.99944 * 2 1 3 34 34 H 0.96992 * 120.00126 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47083 * 60.00322 * 16 14 13 36 36 H 1.08994 * 109.47207 * 300.00224 * 16 14 13 37 37 H 1.08998 * 109.46899 * 59.99802 * 17 16 14 38 38 H 1.09004 * 109.47226 * 299.99650 * 17 16 14 39 39 H 1.07995 * 120.46497 * 359.97438 * 22 21 20 40 40 H 1.08001 * 120.74631 * 180.25969 * 23 22 21 41 41 H 1.07994 * 120.32684 * 179.71043 * 24 23 22 42 42 H 1.08003 * 119.55687 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4448 -0.1383 6 1 4.1637 1.3341 0.7369 7 6 4.1180 1.5884 -1.3821 8 7 5.4230 1.4952 -1.5159 9 14 3.0468 1.9151 -2.8771 10 1 2.7808 3.3721 -2.9865 11 1 3.7472 1.4467 -4.0999 12 1 1.7608 1.1867 -2.7334 13 8 1.6678 2.0874 1.2466 14 6 0.4848 2.7211 1.2755 15 8 -0.2167 2.7359 0.2917 16 6 0.0317 3.4139 2.5347 17 6 -1.3389 4.0523 2.3005 18 6 -1.7924 4.7446 3.5599 19 7 -1.5582 5.9902 3.8905 20 6 -2.1528 6.1648 5.0922 21 6 -2.1717 7.4152 5.8928 22 6 -2.8347 7.4411 7.1170 23 6 -2.8394 8.6129 7.8549 24 6 -2.1888 9.7236 7.3375 25 6 -1.5544 9.6279 6.1121 26 7 -1.5614 8.4992 5.4334 27 7 -2.7072 5.0266 5.4178 28 8 -2.5094 4.2031 4.5496 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8292 1.5958 -2.3909 35 1 0.7513 4.1874 2.8029 36 1 -0.0391 2.6872 3.3439 37 1 -2.0588 3.2791 2.0320 38 1 -1.2677 4.7793 1.4914 39 1 -3.3353 6.5588 7.4874 40 1 -3.3417 8.6621 8.8097 41 1 -2.1780 10.6538 7.8860 42 1 -1.0472 10.4907 5.7060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187900451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:25 Heat of formation + Delta-G solvation = -11.407617 kcal Electronic energy + Delta-G solvation = -26772.227286 eV Core-core repulsion = 22719.901837 eV Total energy + Delta-G solvation = -4052.325448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -46.77398 -41.44576 -41.15556 -37.93681 -37.13178 -35.71883 -35.30705 -33.92273 -33.60633 -33.01677 -31.66607 -29.80312 -27.31022 -26.43802 -24.99758 -24.62528 -23.94531 -22.76322 -22.06755 -21.20690 -19.59433 -19.19922 -19.12459 -18.38486 -17.86078 -17.63998 -17.24134 -17.04760 -16.78570 -16.26946 -15.57579 -15.34802 -15.25135 -14.98727 -14.81214 -14.78898 -14.11164 -14.00004 -13.91775 -13.75177 -13.63005 -13.30039 -13.05461 -12.98128 -12.88689 -12.87686 -12.53441 -12.30548 -12.23794 -11.95351 -11.81201 -11.54680 -11.37491 -11.21602 -10.99872 -10.97833 -10.75965 -10.60813 -10.01788 -8.45098 -6.54440 -0.59924 0.10155 0.23024 1.19952 1.27420 1.31260 1.36491 1.41370 1.49923 2.03579 2.18514 2.21672 2.63455 2.76859 2.93305 3.53109 3.64631 3.68300 3.90822 3.95178 4.00607 4.02271 4.09058 4.22259 4.24777 4.32073 4.42841 4.48778 4.51653 4.62454 4.65497 4.68693 4.83954 4.88431 5.04158 5.08164 5.12265 5.14630 5.17677 5.39890 5.53461 5.58978 5.74136 6.21375 6.54789 6.77770 6.94638 6.96032 7.14534 8.70336 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.002166 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.589051 B =12922.464337 C =13665.697409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.191 3.809 4 H 0.041 0.959 5 C -0.532 4.532 6 H 0.045 0.955 7 C 0.032 3.968 8 N -0.925 5.925 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.271 1.271 12 H -0.244 1.244 13 O -0.361 6.361 14 C 0.454 3.546 15 O -0.535 6.535 16 C -0.105 4.105 17 C -0.007 4.007 18 C 0.203 3.797 19 N -0.477 5.477 20 C 0.203 3.797 21 C 0.158 3.842 22 C -0.138 4.138 23 C -0.070 4.070 24 C -0.140 4.140 25 C 0.090 3.910 26 N -0.488 5.488 27 N -0.375 5.375 28 O 0.094 5.906 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.275 0.725 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.554 12.963 18.215 30.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.137 3.863 4 H 0.058 0.942 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.563 5.563 9 Si 0.751 3.249 10 H -0.194 1.194 11 H -0.196 1.196 12 H -0.168 1.168 13 O -0.278 6.278 14 C 0.299 3.701 15 O -0.427 6.427 16 C -0.143 4.143 17 C -0.046 4.046 18 C -0.018 4.018 19 N -0.210 5.210 20 C -0.068 4.068 21 C 0.021 3.979 22 C -0.160 4.160 23 C -0.095 4.095 24 C -0.160 4.160 25 C -0.068 4.068 26 N -0.199 5.199 27 N -0.081 5.081 28 O 0.031 5.969 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.166 0.834 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.421 13.168 17.650 30.032 hybrid contribution -0.001 -0.036 -0.412 0.414 sum -20.421 13.131 17.238 29.776 Atomic orbital electron populations 1.21832 0.94716 1.01797 1.01445 1.22016 0.96002 0.96662 1.02244 1.20829 0.93638 0.90628 0.81195 0.94164 1.20987 0.90037 1.51363 0.94572 0.93706 1.25706 0.96139 0.93420 1.01638 1.69970 1.11356 1.49259 1.25759 0.86012 0.80093 0.79807 0.78958 1.19430 1.19572 1.16792 1.86603 1.36123 1.63023 1.42015 1.23862 0.79565 0.76124 0.90596 1.90612 1.55142 1.59278 1.37619 1.21302 0.96952 1.01834 0.94257 1.20061 0.96553 1.01197 0.86781 1.28918 0.90930 0.88027 0.93907 1.72180 1.22079 1.15058 1.11657 1.23865 0.97003 0.94308 0.91577 1.18039 0.99004 0.88606 0.92222 1.22209 0.98910 1.01445 0.93459 1.22060 0.96115 0.90811 1.00563 1.22822 0.95704 1.01282 0.96233 1.23397 0.96462 0.94536 0.92440 1.67406 1.16712 0.99778 1.36004 1.74817 1.21538 1.00140 1.11599 1.85279 1.53459 1.35551 1.22650 0.93565 0.91109 0.93094 0.91714 0.91694 0.91574 0.86650 0.84621 0.84585 0.86135 0.83435 0.80190 0.79993 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.57 71.98 0.62 -4.16 16 2 C -0.13 -5.43 5.63 30.59 0.17 -5.25 16 3 C 0.19 9.14 1.90 29.85 0.06 9.20 16 4 H 0.04 2.00 4.31 -2.39 -0.01 1.99 16 5 C -0.53 -30.46 9.25 25.60 0.24 -30.22 16 6 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 7 C 0.03 1.81 5.47 84.66 0.46 2.27 16 8 N -0.93 -56.05 13.96 21.45 0.30 -55.75 16 9 Si 0.93 43.54 26.99 68.60 1.85 45.40 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.24 -10.80 6.82 99.48 0.68 -10.12 16 13 O -0.36 -15.52 9.81 -51.41 -0.50 -16.02 16 14 C 0.45 15.54 6.44 71.24 0.46 16.00 16 15 O -0.54 -19.93 13.12 21.94 0.29 -19.64 16 16 C -0.10 -2.41 5.79 29.85 0.17 -2.24 16 17 C -0.01 -0.14 5.13 29.85 0.15 0.01 16 18 C 0.20 4.63 7.75 88.36 0.68 5.31 16 19 N -0.48 -13.53 11.56 -302.58 -3.50 -17.03 16 20 C 0.20 5.51 7.90 137.33 1.09 6.60 16 21 C 0.16 3.78 6.76 42.00 0.28 4.07 16 22 C -0.14 -2.27 9.73 22.57 0.22 -2.05 16 23 C -0.07 -0.64 10.17 22.44 0.23 -0.41 16 24 C -0.14 -1.15 10.11 22.41 0.23 -0.92 16 25 C 0.09 1.32 11.18 84.73 0.95 2.27 16 26 N -0.49 -11.78 10.29 -184.79 -1.90 -13.69 16 27 N -0.38 -9.41 11.83 -59.21 -0.70 -10.11 16 28 O 0.09 2.12 11.29 74.59 0.84 2.97 16 29 H 0.05 1.65 7.83 -2.39 -0.02 1.63 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.05 1.63 6.04 -2.39 -0.01 1.62 16 32 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.14 2.14 8.10 -2.39 -0.02 2.12 16 38 H 0.12 2.52 8.10 -2.38 -0.02 2.50 16 39 H 0.15 2.15 7.86 -2.91 -0.02 2.13 16 40 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 41 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -76.84 365.17 3.71 -73.13 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.03 Total: 10.29 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.01 Total: 0.46 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -5.80 Total: -96.58 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: 0.63 Total: -32.70 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.85 Total: 45.40 kcal Total: -76.84 3.71 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187900451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.725 kcal (2) G-P(sol) polarization free energy of solvation -76.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds