Wall clock time and date at job start Tue Mar 31 2020 16:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 H 1.08992 * 109.47262 * 54.99622 * 3 2 1 5 5 C 1.50702 * 109.47065 * 175.00009 * 3 2 1 6 6 H 1.07998 * 120.00186 * 119.99616 * 5 3 2 7 7 C 1.37884 * 119.99667 * 299.99852 * 5 3 2 8 8 N 1.31508 * 120.00202 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99672 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47434 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47046 * 120.00282 * 9 7 5 12 12 H 1.48504 * 109.47247 * 239.99869 * 9 7 5 13 13 O 1.45203 * 109.47088 * 294.99565 * 3 2 1 14 14 C 1.34226 * 116.99798 * 90.00039 * 13 3 2 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 N 1.39735 * 119.95529 * 269.71991 * 18 17 16 20 20 N 1.28360 * 122.94809 * 179.75037 * 19 18 17 21 21 C 1.35631 * 121.97404 * 0.50647 * 20 19 18 22 22 C 1.39726 * 121.33597 * 179.69937 * 21 20 19 23 23 C 1.37640 * 119.74006 * 180.02562 * 22 21 20 24 24 C 1.38879 * 120.80498 * 0.02562 * 23 22 21 25 25 C 1.37754 * 120.53920 * 0.02562 * 24 23 22 26 26 C 1.39369 * 119.56580 * 359.97438 * 25 24 23 27 27 C 1.35402 * 119.96221 * 89.99861 * 18 17 16 28 28 O 1.21738 * 121.31603 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.47177 * 60.00042 * 1 2 3 30 30 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47318 * 300.00606 * 1 2 3 32 32 H 1.08999 * 109.46939 * 239.99771 * 2 1 3 33 33 H 1.08998 * 109.46925 * 119.99814 * 2 1 3 34 34 H 0.96998 * 120.00100 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 36 36 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 37 37 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 38 38 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 39 39 H 1.07999 * 120.13361 * 0.06324 * 22 21 20 40 40 H 1.08000 * 119.59522 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.73057 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.21300 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1938 11 1 6.3999 1.6158 2.6093 12 1 6.4961 -0.5189 1.4628 13 8 1.6558 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2561 15 8 -0.2189 2.7376 -0.2654 16 6 0.0074 3.4225 -2.5086 17 6 -1.3608 4.0600 -2.2591 18 7 -1.8133 4.7372 -3.4768 19 7 -1.4923 6.0806 -3.6885 20 7 -1.8545 6.7283 -4.7358 21 6 -2.5913 6.1517 -5.7178 22 6 -2.9837 6.8712 -6.8495 23 6 -3.7316 6.2534 -7.8259 24 6 -4.1031 4.9211 -7.7010 25 6 -3.7294 4.1910 -6.5942 26 6 -2.9718 4.7977 -5.5939 27 6 -2.5470 4.0622 -4.3931 28 8 -2.8434 2.8929 -4.2293 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 -0.0711 2.6984 -3.3196 36 1 0.7245 4.1968 -2.7811 37 1 -2.0781 3.2859 -1.9863 38 1 -1.2819 4.7841 -1.4482 39 1 -2.7008 7.9078 -6.9580 40 1 -4.0333 6.8116 -8.6999 41 1 -4.6898 4.4535 -8.4779 42 1 -4.0215 3.1554 -6.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187940123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:30 Heat of formation + Delta-G solvation = -33.718427 kcal Electronic energy + Delta-G solvation = -27434.051243 eV Core-core repulsion = 23380.758326 eV Total energy + Delta-G solvation = -4053.292918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69368 -39.77265 -38.99354 -38.10047 -36.12757 -35.02803 -33.52595 -32.28086 -31.58357 -31.38819 -30.86450 -27.41428 -26.27784 -25.61559 -23.92276 -23.02867 -22.68584 -20.73132 -20.01008 -19.45102 -19.24777 -17.64701 -16.93920 -16.64548 -16.41991 -16.00456 -15.84308 -15.61764 -15.40528 -14.99297 -14.54202 -14.45817 -14.09741 -13.91739 -13.46757 -13.19740 -12.94398 -12.82229 -12.69739 -12.45806 -12.37948 -12.04474 -11.50520 -11.36030 -11.31140 -11.17024 -10.97308 -10.93862 -10.65227 -10.52304 -10.41987 -10.28464 -9.81967 -9.79452 -9.65658 -9.38300 -8.90469 -8.81160 -8.46580 -6.19305 -4.26313 -0.47886 0.19616 1.41965 1.54155 2.13972 2.93112 3.22437 3.23213 3.24264 3.30195 3.34840 3.51230 3.65035 4.04789 4.22949 4.32846 4.54277 4.60035 4.70037 4.79308 4.88229 5.12637 5.17196 5.29577 5.31455 5.40912 5.43564 5.61295 5.71064 5.76423 5.84795 5.90381 6.10729 6.23809 6.30401 6.46197 6.86895 6.96343 7.16331 7.17500 7.24306 7.61065 7.72926 7.85845 7.92601 8.14724 8.58890 8.86813 9.38915 10.87493 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.002310 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.982936 B =12116.844246 C =12588.531812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.353 6.353 14 C 0.462 3.538 15 O -0.516 6.516 16 C -0.134 4.134 17 C 0.135 3.865 18 N -0.452 5.452 19 N 0.094 4.906 20 N -0.207 5.207 21 C 0.062 3.938 22 C -0.071 4.071 23 C -0.085 4.085 24 C -0.105 4.105 25 C -0.051 4.051 26 C -0.151 4.151 27 C 0.525 3.475 28 O -0.495 6.495 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 11.806 -19.726 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.269 6.269 14 C 0.304 3.696 15 O -0.407 6.407 16 C -0.173 4.173 17 C 0.014 3.986 18 N -0.278 5.278 19 N 0.108 4.892 20 N -0.098 5.098 21 C -0.048 4.048 22 C -0.094 4.094 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.070 4.070 26 C -0.161 4.161 27 C 0.315 3.685 28 O -0.365 6.365 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.768 11.792 -18.544 26.478 hybrid contribution 0.346 -1.014 -0.325 1.119 sum -14.423 10.779 -18.869 26.081 Atomic orbital electron populations 1.21861 0.98308 0.99095 1.00746 1.22024 0.92686 0.99311 1.03389 1.20729 0.95087 0.88812 0.78521 0.93330 1.21081 0.89650 1.38934 1.06242 0.91281 1.24889 0.99268 0.94751 0.95071 1.69894 1.35309 1.37843 1.09472 0.86230 0.83878 0.77881 0.78221 1.19488 1.20734 1.20721 1.86474 1.33877 1.62248 1.44338 1.22723 0.81115 0.77035 0.88721 1.90629 1.55474 1.58760 1.35838 1.21608 0.97192 1.01618 0.96910 1.21647 0.95977 0.97998 0.83017 1.51227 1.46240 1.08779 1.21509 1.80314 1.07589 0.89769 1.11522 1.73957 1.11089 1.26333 0.98415 1.19661 0.97890 0.91542 0.95666 1.21043 0.96604 1.00722 0.91047 1.21416 0.95582 0.94863 0.98592 1.21440 0.99136 0.94303 0.97629 1.21156 0.93583 1.00886 0.91391 1.20614 1.03965 0.94212 0.97284 1.18770 0.79007 0.87279 0.83491 1.90933 1.54550 1.14525 1.76524 0.94957 0.94784 0.92757 0.93992 0.87281 0.92423 0.87889 0.87356 0.86819 0.86795 0.83273 0.84017 0.84128 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.84 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.78 16 4 H 0.05 1.41 7.15 -51.93 -0.37 1.04 16 5 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 O -0.35 -8.32 9.81 -39.25 -0.38 -8.70 16 14 C 0.46 9.27 6.41 36.01 0.23 9.50 16 15 O -0.52 -11.33 13.13 -18.75 -0.25 -11.58 16 16 C -0.13 -2.00 6.14 -27.88 -0.17 -2.17 16 17 C 0.13 1.83 5.03 -4.04 -0.02 1.81 16 18 N -0.45 -5.89 3.52 -61.31 -0.22 -6.10 16 19 N 0.09 1.16 12.77 60.35 0.77 1.93 16 20 N -0.21 -2.32 11.61 32.27 0.37 -1.95 16 21 C 0.06 0.61 6.72 -84.51 -0.57 0.04 16 22 C -0.07 -0.45 10.02 -39.24 -0.39 -0.85 16 23 C -0.09 -0.38 10.00 -39.56 -0.40 -0.78 16 24 C -0.10 -0.54 10.02 -39.52 -0.40 -0.94 16 25 C -0.05 -0.42 9.67 -39.34 -0.38 -0.80 16 26 C -0.15 -1.63 5.90 -104.76 -0.62 -2.25 16 27 C 0.52 7.07 7.76 -12.39 -0.10 6.98 16 28 O -0.49 -7.81 16.33 5.15 0.08 -7.73 16 29 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.25 7.80 -51.93 -0.40 0.84 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.11 1.64 7.44 -51.93 -0.39 1.26 16 38 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 0.19 8.06 -52.49 -0.42 -0.24 16 41 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 42 H 0.15 1.14 7.81 -52.49 -0.41 0.73 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -32.43 360.63 -6.80 -39.23 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.12 Total: 1.12 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.10 Total: -3.30 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 1.56 Total: -30.51 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.55 Total: -28.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.43 -6.80 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187940123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.514 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds