Wall clock time and date at job start Tue Mar 31 2020 16:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 H 1.08992 * 109.47262 * 54.99622 * 3 2 1 5 5 C 1.50702 * 109.47065 * 175.00009 * 3 2 1 6 6 H 1.07998 * 120.00186 * 119.99616 * 5 3 2 7 7 C 1.37884 * 119.99667 * 299.99852 * 5 3 2 8 8 N 1.31508 * 120.00202 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99672 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47434 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47046 * 120.00282 * 9 7 5 12 12 H 1.48504 * 109.47247 * 239.99869 * 9 7 5 13 13 O 1.45203 * 109.47088 * 294.99565 * 3 2 1 14 14 C 1.34226 * 116.99798 * 90.00039 * 13 3 2 15 15 O 1.20824 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 N 1.39735 * 119.95529 * 269.71991 * 18 17 16 20 20 N 1.28360 * 122.94809 * 179.75037 * 19 18 17 21 21 C 1.35631 * 121.97404 * 0.50647 * 20 19 18 22 22 C 1.39726 * 121.33597 * 179.69937 * 21 20 19 23 23 C 1.37640 * 119.74006 * 180.02562 * 22 21 20 24 24 C 1.38879 * 120.80498 * 0.02562 * 23 22 21 25 25 C 1.37754 * 120.53920 * 0.02562 * 24 23 22 26 26 C 1.39369 * 119.56580 * 359.97438 * 25 24 23 27 27 C 1.35402 * 119.96221 * 89.99861 * 18 17 16 28 28 O 1.21738 * 121.31603 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.47177 * 60.00042 * 1 2 3 30 30 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47318 * 300.00606 * 1 2 3 32 32 H 1.08999 * 109.46939 * 239.99771 * 2 1 3 33 33 H 1.08998 * 109.46925 * 119.99814 * 2 1 3 34 34 H 0.96998 * 120.00100 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47152 * 60.00249 * 16 14 13 36 36 H 1.09001 * 109.46980 * 300.00350 * 16 14 13 37 37 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 38 38 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 39 39 H 1.07999 * 120.13361 * 0.06324 * 22 21 20 40 40 H 1.08000 * 119.59522 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.73057 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.21300 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1938 11 1 6.3999 1.6158 2.6093 12 1 6.4961 -0.5189 1.4628 13 8 1.6558 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2561 15 8 -0.2189 2.7376 -0.2654 16 6 0.0074 3.4225 -2.5086 17 6 -1.3608 4.0600 -2.2591 18 7 -1.8133 4.7372 -3.4768 19 7 -1.4923 6.0806 -3.6885 20 7 -1.8545 6.7283 -4.7358 21 6 -2.5913 6.1517 -5.7178 22 6 -2.9837 6.8712 -6.8495 23 6 -3.7316 6.2534 -7.8259 24 6 -4.1031 4.9211 -7.7010 25 6 -3.7294 4.1910 -6.5942 26 6 -2.9718 4.7977 -5.5939 27 6 -2.5470 4.0622 -4.3931 28 8 -2.8434 2.8929 -4.2293 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 -0.0711 2.6984 -3.3196 36 1 0.7245 4.1968 -2.7811 37 1 -2.0781 3.2859 -1.9863 38 1 -1.2819 4.7841 -1.4482 39 1 -2.7008 7.9078 -6.9580 40 1 -4.0333 6.8116 -8.6999 41 1 -4.6898 4.4535 -8.4779 42 1 -4.0215 3.1554 -6.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187940123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:29 Heat of formation + Delta-G solvation = -53.728552 kcal Electronic energy + Delta-G solvation = -27434.918947 eV Core-core repulsion = 23380.758326 eV Total energy + Delta-G solvation = -4054.160622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.53135 -41.46342 -39.83594 -38.91882 -37.86481 -36.11195 -35.53389 -33.47989 -33.02171 -32.24676 -31.84287 -29.38191 -27.30713 -26.46507 -25.34589 -24.55203 -23.36140 -22.46235 -21.27938 -20.77146 -20.02396 -19.05628 -18.68370 -17.99547 -17.55763 -17.46073 -17.05290 -16.71145 -16.34673 -16.14055 -15.97678 -15.36071 -15.13320 -15.01487 -14.89681 -14.70296 -14.24313 -13.98433 -13.86392 -13.43918 -13.34640 -13.23100 -13.20677 -13.12259 -12.99731 -12.83416 -12.58865 -12.49984 -12.14671 -11.78682 -11.76801 -11.56522 -11.40712 -11.34953 -11.22480 -10.84278 -10.54492 -10.36475 -9.64831 -8.28622 -6.45290 -1.20807 -0.44350 0.58616 0.70147 1.27790 1.37934 1.41486 1.41692 1.55534 2.01252 2.40850 2.41465 2.61962 2.85312 3.00999 3.41319 3.46894 3.59476 3.79891 3.90475 4.08547 4.13979 4.21696 4.27315 4.33077 4.35482 4.37348 4.48453 4.56236 4.67462 4.74019 4.81998 4.87100 4.91911 5.06498 5.18894 5.21198 5.25307 5.35206 5.50309 5.63303 5.65007 5.95191 6.10254 6.22312 6.58682 6.92760 7.00246 7.25861 8.78371 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.002310 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.982936 B =12116.844246 C =12588.531812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.272 1.272 13 O -0.364 6.364 14 C 0.458 3.542 15 O -0.537 6.537 16 C -0.117 4.117 17 C 0.143 3.857 18 N -0.457 5.457 19 N 0.066 4.934 20 N -0.195 5.195 21 C 0.031 3.969 22 C -0.061 4.061 23 C -0.069 4.069 24 C -0.082 4.082 25 C -0.067 4.067 26 C -0.171 4.171 27 C 0.515 3.485 28 O -0.534 6.534 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.271 0.729 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.174 0.826 40 H 0.188 0.812 41 H 0.179 0.821 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 13.277 -23.128 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.030 0.970 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.197 1.197 13 O -0.280 6.280 14 C 0.302 3.698 15 O -0.428 6.428 16 C -0.156 4.156 17 C 0.021 3.979 18 N -0.281 5.281 19 N 0.081 4.919 20 N -0.086 5.086 21 C -0.079 4.079 22 C -0.084 4.084 23 C -0.088 4.088 24 C -0.102 4.102 25 C -0.087 4.087 26 C -0.181 4.181 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.192 0.808 40 H 0.205 0.795 41 H 0.196 0.804 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.375 13.302 -21.948 29.917 hybrid contribution 0.356 -1.339 0.502 1.474 sum -15.020 11.964 -21.445 28.786 Atomic orbital electron populations 1.21719 0.96278 1.00609 1.00151 1.21876 0.94445 0.98179 1.02316 1.20431 0.94630 0.89287 0.78571 0.96978 1.21351 0.90496 1.39977 1.06881 0.91697 1.25800 1.04239 0.93866 0.94369 1.70010 1.37364 1.37904 1.09864 0.85162 0.77718 0.78299 0.78388 1.18880 1.20040 1.19717 1.86460 1.35792 1.62951 1.42831 1.23632 0.79767 0.76286 0.90130 1.90615 1.55656 1.59311 1.37183 1.21585 0.98280 1.01683 0.94018 1.21415 0.94698 0.97864 0.83920 1.51092 1.46583 1.09233 1.21163 1.80345 1.09681 0.89267 1.12589 1.73806 1.10004 1.26464 0.98308 1.19945 0.99409 0.91689 0.96812 1.21507 0.95462 1.01672 0.89717 1.21979 0.93282 0.94549 0.98972 1.21949 0.97168 0.94439 0.96595 1.21350 0.93963 1.01286 0.92116 1.20649 1.05631 0.94767 0.97015 1.19306 0.78600 0.87111 0.84292 1.90889 1.56341 1.16051 1.77556 0.94622 0.92141 0.94203 0.93781 0.89399 0.91999 0.87235 0.85394 0.88182 0.86236 0.80829 0.79460 0.80400 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.57 71.98 0.62 -5.27 16 2 C -0.13 -6.70 5.49 30.59 0.17 -6.53 16 3 C 0.22 12.35 2.25 29.85 0.07 12.42 16 4 H 0.01 0.76 7.15 -2.39 -0.02 0.74 16 5 C -0.55 -31.55 8.90 25.60 0.23 -31.32 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -52.62 11.29 21.45 0.24 -52.37 16 9 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 O -0.36 -17.74 9.81 -51.38 -0.50 -18.24 16 14 C 0.46 19.10 6.41 71.24 0.46 19.56 16 15 O -0.54 -24.66 13.13 21.97 0.29 -24.37 16 16 C -0.12 -3.59 6.14 29.85 0.18 -3.41 16 17 C 0.14 4.09 5.03 86.38 0.43 4.53 16 18 N -0.46 -12.42 3.52 -465.73 -1.64 -14.06 16 19 N 0.07 1.67 12.77 37.02 0.47 2.14 16 20 N -0.20 -4.29 11.61 -51.82 -0.60 -4.89 16 21 C 0.03 0.57 6.72 39.64 0.27 0.84 16 22 C -0.06 -0.55 10.02 22.49 0.23 -0.32 16 23 C -0.07 -0.24 10.00 22.28 0.22 -0.02 16 24 C -0.08 -0.48 10.02 22.31 0.22 -0.26 16 25 C -0.07 -1.00 9.67 22.43 0.22 -0.78 16 26 C -0.17 -3.64 5.90 -19.96 -0.12 -3.76 16 27 C 0.51 14.52 7.76 86.47 0.67 15.19 16 28 O -0.53 -17.88 16.33 -4.47 -0.07 -17.96 16 29 H 0.03 1.55 6.06 -2.38 -0.01 1.54 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.04 1.88 7.80 -2.39 -0.02 1.86 16 32 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 4.91 5.95 -2.39 -0.01 4.90 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 35 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.10 3.12 7.44 -2.39 -0.02 3.10 16 38 H 0.12 3.21 8.10 -2.39 -0.02 3.19 16 39 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.19 -0.91 8.06 -2.91 -0.02 -0.93 16 41 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 42 H 0.14 2.16 7.81 -2.91 -0.02 2.14 16 Total: -1.00 -74.75 360.63 5.58 -69.17 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.06 Total: 12.99 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 4.31 Total: 2.24 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.53 Total: -69.18 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.29 Total: -60.58 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -74.75 5.58 -69.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187940123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.445 kcal (2) G-P(sol) polarization free energy of solvation -74.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds