Wall clock time and date at job start Tue Mar 31 2020 16:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47187 * 2 1 4 4 C 1.53000 * 110.53322 * 302.82750 * 3 2 1 5 5 N 1.47311 * 110.60366 * 65.82830 * 3 2 1 6 6 C 1.34520 * 106.62064 * 118.30427 * 5 3 2 7 7 O 1.21537 * 123.76865 * 180.21012 * 6 5 3 8 8 N 1.33787 * 112.46088 * 0.38656 * 6 5 3 9 9 N 1.40094 * 124.17947 * 179.86516 * 8 6 5 10 10 C 1.34781 * 119.99844 * 284.69290 * 9 8 6 11 11 O 1.21539 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.47889 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.39923 * 120.02471 * 0.03195 * 12 10 9 14 14 C 1.38328 * 120.35839 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.40871 * 359.71354 * 14 13 12 16 16 C 1.40743 * 120.04222 * 0.56155 * 15 14 13 17 17 C 1.41435 * 120.17990 * 179.72031 * 16 15 14 18 18 H 1.07998 * 120.00764 * 154.54512 * 17 16 15 19 19 C 1.39941 * 120.00032 * 334.53692 * 17 16 15 20 20 N 1.30828 * 119.99763 * 334.28458 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 154.27346 * 19 17 16 22 22 H 1.48501 * 109.47114 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47048 * 300.00467 * 21 19 17 24 24 H 1.48503 * 109.47019 * 60.00440 * 21 19 17 25 25 C 1.38995 * 120.02472 * 180.02562 * 12 10 9 26 26 C 1.34772 * 111.64412 * 359.59362 * 8 6 5 27 27 O 1.21225 * 127.16029 * 180.19290 * 26 8 6 28 28 H 1.08991 * 109.47187 * 60.00072 * 1 2 3 29 29 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46977 * 299.99905 * 1 2 3 31 31 H 1.09007 * 109.47150 * 239.99392 * 2 1 3 32 32 H 1.09008 * 109.47027 * 120.00148 * 2 1 3 33 33 H 1.09003 * 109.47369 * 297.87474 * 4 3 2 34 34 H 1.09005 * 109.47235 * 57.87164 * 4 3 2 35 35 H 1.09001 * 109.47293 * 177.87164 * 4 3 2 36 36 H 0.96998 * 126.68425 * 298.56307 * 5 3 2 37 37 H 0.96995 * 120.00541 * 104.70383 * 9 8 6 38 38 H 1.08004 * 119.82107 * 359.97438 * 13 12 10 39 39 H 1.07996 * 119.79271 * 179.97438 * 14 13 12 40 40 H 1.08005 * 119.97844 * 180.27930 * 15 14 13 41 41 H 0.97004 * 119.99972 * 354.25098 * 20 19 17 42 42 H 1.07994 * 120.20066 * 0.05099 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4866 2.2073 -1.2040 5 7 1.6805 2.1194 1.2580 6 6 2.8365 2.4611 1.8551 7 8 2.9005 3.0373 2.9232 8 7 3.9076 2.0991 1.1399 9 7 5.2318 2.3367 1.5307 10 6 5.7515 3.5763 1.4316 11 8 5.0712 4.4881 1.0037 12 6 7.1492 3.8274 1.8446 13 6 7.9327 2.7782 2.3377 14 6 9.2410 3.0051 2.7255 15 6 9.7894 4.2648 2.6254 16 6 9.0149 5.3337 2.1372 17 6 9.5732 6.6295 2.0387 18 1 9.1782 7.3348 1.3226 19 6 10.6376 6.9977 2.8693 20 7 10.7989 6.4082 4.0260 21 14 11.8281 8.3309 2.3263 22 1 12.8583 8.5323 3.3767 23 1 12.4864 7.9207 1.0599 24 1 11.0862 9.5990 2.1104 25 6 7.6855 5.1056 1.7431 26 6 3.5556 1.4723 -0.0001 27 8 4.2967 1.0259 -0.8492 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8387 1.7407 -2.1240 34 1 0.3970 2.1848 -1.1792 35 1 1.8296 3.2413 -1.1666 36 1 0.7848 2.2831 1.5925 37 1 5.7747 1.6092 1.8724 38 1 7.5138 1.7858 2.4160 39 1 9.8374 2.1887 3.1052 40 1 10.8131 4.4332 2.9259 41 1 10.1356 5.7764 4.3451 42 1 7.0842 5.9185 1.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193171964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:53 Heat of formation + Delta-G solvation = -30.362470 kcal Electronic energy + Delta-G solvation = -28048.785625 eV Core-core repulsion = 23995.638232 eV Total energy + Delta-G solvation = -4053.147393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.78720 -39.47114 -38.81943 -37.54671 -37.01330 -35.80923 -34.09942 -33.51315 -31.51045 -30.00022 -29.86672 -29.39503 -26.07576 -25.23244 -23.84986 -23.66599 -21.69351 -21.03865 -20.79936 -20.16858 -18.78051 -18.32133 -17.40237 -16.83514 -16.36718 -16.17127 -15.94441 -15.35939 -14.98970 -14.62515 -14.42079 -14.38313 -14.27446 -14.22594 -13.73067 -13.56896 -13.07892 -12.94906 -12.67849 -12.55086 -12.45725 -12.02649 -11.92085 -11.48134 -11.37182 -11.13914 -11.06772 -10.77977 -10.70339 -10.55299 -10.44300 -10.26674 -9.80600 -9.63201 -9.50173 -9.37669 -9.10631 -7.94438 -7.83596 -7.30681 -4.57786 1.16589 1.36302 1.83995 2.62512 2.69701 2.84471 3.12396 3.16905 3.32955 3.38475 3.54931 3.84506 3.96204 4.01433 4.20965 4.45940 4.67154 4.75838 4.98664 5.00611 5.20387 5.23830 5.27879 5.33188 5.41021 5.42722 5.59037 5.74578 5.87774 6.01457 6.19501 6.50855 6.56679 6.68444 6.70299 6.74693 7.05937 7.17652 7.25354 7.44688 7.55770 7.56888 7.69382 7.91239 7.99485 8.07211 8.51465 8.55186 8.71294 9.94033 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.002544 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.851865 B =11001.955342 C =11132.080487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.133 3.867 4 C -0.152 4.152 5 N -0.715 5.715 6 C 0.706 3.294 7 O -0.521 6.521 8 N -0.375 5.375 9 N -0.508 5.508 10 C 0.574 3.426 11 O -0.525 6.525 12 C -0.095 4.095 13 C -0.225 4.225 14 C -0.085 4.085 15 C -0.199 4.199 16 C 0.086 3.914 17 C -0.514 4.514 18 H 0.080 0.920 19 C 0.038 3.962 20 N -0.791 5.791 21 Si 1.067 2.933 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.148 4.148 26 C 0.529 3.471 27 O -0.451 6.451 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.441 0.559 37 H 0.427 0.573 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.300 0.700 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 -12.647 -6.722 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.041 3.959 4 C -0.210 4.210 5 N -0.382 5.382 6 C 0.406 3.594 7 O -0.391 6.391 8 N -0.209 5.209 9 N -0.262 5.262 10 C 0.366 3.634 11 O -0.398 6.398 12 C -0.100 4.100 13 C -0.245 4.245 14 C -0.104 4.104 15 C -0.219 4.219 16 C 0.083 3.917 17 C -0.541 4.541 18 H 0.098 0.902 19 C -0.184 4.184 20 N -0.413 5.413 21 Si 0.890 3.110 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.168 4.168 26 C 0.315 3.685 27 O -0.318 6.318 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.286 0.714 37 H 0.271 0.729 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.326 -11.114 -6.396 19.983 hybrid contribution -1.565 -1.230 -0.006 1.991 sum -16.891 -12.344 -6.401 21.878 Atomic orbital electron populations 1.21811 0.93804 1.02867 1.02498 1.21783 0.97741 0.91747 1.04486 1.21475 0.90463 0.96347 0.87652 1.22100 1.02572 1.00940 0.95382 1.45512 1.07504 1.62910 1.22317 1.15793 0.80720 0.79338 0.83561 1.91056 1.84809 1.43063 1.20183 1.45042 0.99251 1.55350 1.21218 1.45306 0.98348 1.13105 1.69420 1.19436 0.87884 0.80059 0.76053 1.90720 1.61334 1.42700 1.45071 1.19008 0.89240 0.96067 1.05705 1.20310 0.96070 0.96044 1.12055 1.20521 0.94423 0.96432 0.98978 1.21341 0.99497 0.92272 1.08790 1.17619 0.90014 0.93617 0.90425 1.20621 1.15505 0.98455 1.19517 0.90165 1.27092 0.97913 1.00652 0.92732 1.70474 1.35228 1.20036 1.15583 0.83614 0.75776 0.74743 0.76913 1.19767 1.19848 1.19975 1.21168 0.94987 0.94158 1.06512 1.21271 0.90667 0.76456 0.80105 1.90809 1.58764 1.44229 1.37983 0.91551 0.91520 0.92339 0.88976 0.90515 0.89544 0.89569 0.90846 0.71380 0.72901 0.88892 0.88247 0.87084 0.88659 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.41 37.16 0.35 -0.21 16 2 C -0.12 -0.71 5.30 -26.74 -0.14 -0.85 16 3 C 0.13 1.17 1.01 -132.09 -0.13 1.04 16 4 C -0.15 -1.08 8.62 37.16 0.32 -0.76 16 5 N -0.71 -6.97 5.62 -52.94 -0.30 -7.27 16 6 C 0.71 10.93 8.55 -88.03 -0.75 10.17 16 7 O -0.52 -10.22 17.91 5.33 0.10 -10.13 16 8 N -0.37 -6.00 2.93 -15.79 -0.05 -6.05 16 9 N -0.51 -9.10 5.95 30.54 0.18 -8.92 16 10 C 0.57 12.58 7.83 -12.31 -0.10 12.48 16 11 O -0.52 -12.94 16.54 5.33 0.09 -12.85 16 12 C -0.10 -2.18 5.87 -105.03 -0.62 -2.80 16 13 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 14 C -0.09 -1.82 10.01 -39.73 -0.40 -2.22 16 15 C -0.20 -4.85 7.95 -38.81 -0.31 -5.16 16 16 C 0.09 2.24 5.29 -106.87 -0.57 1.68 16 17 C -0.51 -13.43 8.98 -37.73 -0.34 -13.77 16 18 H 0.08 2.06 7.96 -52.49 -0.42 1.64 16 19 C 0.04 0.95 4.93 -17.34 -0.09 0.87 16 20 N -0.79 -20.44 12.32 55.55 0.68 -19.75 16 21 Si 1.07 21.12 30.00 -169.99 -5.10 16.02 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.15 -3.74 9.34 -38.44 -0.36 -4.10 16 26 C 0.53 7.23 7.18 -10.55 -0.08 7.15 16 27 O -0.45 -7.10 18.01 5.60 0.10 -7.00 16 28 H 0.07 0.19 6.42 -51.93 -0.33 -0.14 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.19 7.40 -51.93 -0.38 -0.19 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.37 6.37 -51.93 -0.33 0.04 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.44 2.97 8.40 -40.82 -0.34 2.62 16 37 H 0.43 6.45 6.85 -182.61 -1.25 5.20 16 38 H 0.09 1.56 6.38 -52.48 -0.33 1.22 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.11 2.76 6.49 -52.48 -0.34 2.42 16 41 H 0.30 7.93 6.71 -40.82 -0.27 7.66 16 42 H 0.11 2.86 7.64 -52.49 -0.40 2.46 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -33.71 359.79 -8.19 -41.90 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.74 Total: 10.08 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.57 Total: -1.47 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.52 Total: -41.98 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: 0.28 Total: -29.97 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.10 Total: 16.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.71 -8.19 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193171964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.538 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds