Wall clock time and date at job start Tue Mar 31 2020 16:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47187 * 2 1 4 4 C 1.53000 * 110.53322 * 302.82750 * 3 2 1 5 5 N 1.47311 * 110.60366 * 65.82830 * 3 2 1 6 6 C 1.34520 * 106.62064 * 118.30427 * 5 3 2 7 7 O 1.21537 * 123.76865 * 180.21012 * 6 5 3 8 8 N 1.33787 * 112.46088 * 0.38656 * 6 5 3 9 9 N 1.40094 * 124.17947 * 179.86516 * 8 6 5 10 10 C 1.34781 * 119.99844 * 284.69290 * 9 8 6 11 11 O 1.21539 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.47889 * 120.00021 * 179.97438 * 10 9 8 13 13 C 1.39923 * 120.02471 * 0.03195 * 12 10 9 14 14 C 1.38328 * 120.35839 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.40871 * 359.71354 * 14 13 12 16 16 C 1.40743 * 120.04222 * 0.56155 * 15 14 13 17 17 C 1.41435 * 120.17990 * 179.72031 * 16 15 14 18 18 H 1.07998 * 120.00764 * 154.54512 * 17 16 15 19 19 C 1.39941 * 120.00032 * 334.53692 * 17 16 15 20 20 N 1.30828 * 119.99763 * 334.28458 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 154.27346 * 19 17 16 22 22 H 1.48501 * 109.47114 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47048 * 300.00467 * 21 19 17 24 24 H 1.48503 * 109.47019 * 60.00440 * 21 19 17 25 25 C 1.38995 * 120.02472 * 180.02562 * 12 10 9 26 26 C 1.34772 * 111.64412 * 359.59362 * 8 6 5 27 27 O 1.21225 * 127.16029 * 180.19290 * 26 8 6 28 28 H 1.08991 * 109.47187 * 60.00072 * 1 2 3 29 29 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46977 * 299.99905 * 1 2 3 31 31 H 1.09007 * 109.47150 * 239.99392 * 2 1 3 32 32 H 1.09008 * 109.47027 * 120.00148 * 2 1 3 33 33 H 1.09003 * 109.47369 * 297.87474 * 4 3 2 34 34 H 1.09005 * 109.47235 * 57.87164 * 4 3 2 35 35 H 1.09001 * 109.47293 * 177.87164 * 4 3 2 36 36 H 0.96998 * 126.68425 * 298.56307 * 5 3 2 37 37 H 0.96995 * 120.00541 * 104.70383 * 9 8 6 38 38 H 1.08004 * 119.82107 * 359.97438 * 13 12 10 39 39 H 1.07996 * 119.79271 * 179.97438 * 14 13 12 40 40 H 1.08005 * 119.97844 * 180.27930 * 15 14 13 41 41 H 0.97004 * 119.99972 * 354.25098 * 20 19 17 42 42 H 1.07994 * 120.20066 * 0.05099 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4866 2.2073 -1.2040 5 7 1.6805 2.1194 1.2580 6 6 2.8365 2.4611 1.8551 7 8 2.9005 3.0373 2.9232 8 7 3.9076 2.0991 1.1399 9 7 5.2318 2.3367 1.5307 10 6 5.7515 3.5763 1.4316 11 8 5.0712 4.4881 1.0037 12 6 7.1492 3.8274 1.8446 13 6 7.9327 2.7782 2.3377 14 6 9.2410 3.0051 2.7255 15 6 9.7894 4.2648 2.6254 16 6 9.0149 5.3337 2.1372 17 6 9.5732 6.6295 2.0387 18 1 9.1782 7.3348 1.3226 19 6 10.6376 6.9977 2.8693 20 7 10.7989 6.4082 4.0260 21 14 11.8281 8.3309 2.3263 22 1 12.8583 8.5323 3.3767 23 1 12.4864 7.9207 1.0599 24 1 11.0862 9.5990 2.1104 25 6 7.6855 5.1056 1.7431 26 6 3.5556 1.4723 -0.0001 27 8 4.2967 1.0259 -0.8492 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8387 1.7407 -2.1240 34 1 0.3970 2.1848 -1.1792 35 1 1.8296 3.2413 -1.1666 36 1 0.7848 2.2831 1.5925 37 1 5.7747 1.6092 1.8724 38 1 7.5138 1.7858 2.4160 39 1 9.8374 2.1887 3.1052 40 1 10.8131 4.4332 2.9259 41 1 10.1356 5.7764 4.3451 42 1 7.0842 5.9185 1.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193171964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:52 Heat of formation + Delta-G solvation = -54.356482 kcal Electronic energy + Delta-G solvation = -28049.826083 eV Core-core repulsion = 23995.638232 eV Total energy + Delta-G solvation = -4054.187851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.91051 -41.14074 -40.03636 -39.27003 -38.15985 -37.20552 -35.94036 -34.55324 -32.80488 -31.86477 -31.14054 -30.42857 -27.19080 -26.80500 -25.39068 -24.62182 -23.19237 -22.69620 -21.84410 -21.64356 -20.41142 -19.68009 -18.70134 -18.27959 -17.58308 -17.41955 -16.92771 -16.76632 -16.44106 -16.13981 -16.02465 -15.96897 -15.55659 -15.49081 -15.02949 -14.76288 -14.39250 -14.25246 -13.90670 -13.72185 -13.17969 -13.15573 -13.05244 -12.82030 -12.52146 -12.47203 -12.32658 -12.21197 -12.07048 -11.96231 -11.84620 -11.74071 -11.45415 -11.18166 -10.95098 -10.83366 -10.69449 -9.81375 -9.73809 -9.25416 -6.57042 -0.10227 0.00349 0.25878 0.77591 1.49726 1.52739 1.63487 1.73427 1.80269 1.84598 2.26591 2.31489 2.60657 2.66135 3.34934 3.39422 3.55228 3.56555 4.04062 4.17791 4.28175 4.29223 4.37545 4.53595 4.63348 4.65405 4.76374 4.82126 4.83711 4.88744 4.98997 5.10200 5.16671 5.18991 5.44845 5.48572 5.55371 5.57253 5.63578 5.67343 5.73928 5.84798 6.03079 6.09804 6.18868 6.61618 6.62689 6.77996 7.03748 7.97019 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.002544 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.851865 B =11001.955342 C =11132.080487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.144 3.856 4 C -0.151 4.151 5 N -0.684 5.684 6 C 0.699 3.301 7 O -0.571 6.571 8 N -0.385 5.385 9 N -0.499 5.499 10 C 0.574 3.426 11 O -0.562 6.562 12 C -0.103 4.103 13 C -0.198 4.198 14 C -0.083 4.083 15 C -0.207 4.207 16 C 0.063 3.937 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.007 3.993 20 N -0.809 5.809 21 Si 1.117 2.883 22 H -0.267 1.267 23 H -0.261 1.261 24 H -0.262 1.262 25 C -0.179 4.179 26 C 0.521 3.479 27 O -0.474 6.474 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.050 0.950 36 H 0.457 0.543 37 H 0.440 0.560 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.285 0.715 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.444 -15.324 -7.540 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.053 3.947 4 C -0.209 4.209 5 N -0.353 5.353 6 C 0.399 3.601 7 O -0.445 6.445 8 N -0.220 5.220 9 N -0.252 5.252 10 C 0.365 3.635 11 O -0.438 6.438 12 C -0.108 4.108 13 C -0.218 4.218 14 C -0.101 4.101 15 C -0.226 4.226 16 C 0.061 3.939 17 C -0.583 4.583 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.432 5.432 21 Si 0.934 3.066 22 H -0.191 1.191 23 H -0.186 1.186 24 H -0.187 1.187 25 C -0.200 4.200 26 C 0.309 3.691 27 O -0.342 6.342 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.307 0.693 37 H 0.287 0.713 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.033 -13.875 -7.240 23.131 hybrid contribution -1.227 -0.638 0.184 1.396 sum -18.260 -14.514 -7.056 24.369 Atomic orbital electron populations 1.21849 0.91502 1.03984 1.03469 1.21852 0.99511 0.88885 1.04926 1.21766 0.86622 0.98721 0.87598 1.22207 1.04881 0.99213 0.94600 1.45434 1.06657 1.61283 1.21880 1.16044 0.81776 0.79121 0.83184 1.91023 1.85577 1.45492 1.22382 1.45492 0.98204 1.55841 1.22422 1.44873 0.99957 1.12087 1.68301 1.19233 0.87513 0.80946 0.75783 1.90692 1.62141 1.44214 1.46790 1.19228 0.90359 0.95842 1.05349 1.20847 0.95321 0.97360 1.08258 1.20966 0.95031 0.96314 0.97755 1.21422 0.99180 0.93250 1.08774 1.17891 0.90511 0.94419 0.91116 1.20779 1.17645 0.99004 1.20867 0.91316 1.28446 0.98804 1.01852 0.91843 1.70590 1.35210 1.21053 1.16315 0.83004 0.74009 0.72612 0.77008 1.19093 1.18581 1.18703 1.21093 0.95036 0.95104 1.08770 1.22246 0.92767 0.75244 0.78818 1.90793 1.59899 1.45125 1.38352 0.90168 0.90433 0.91796 0.88082 0.90700 0.88517 0.85747 0.93095 0.69327 0.71316 0.84076 0.84085 0.87926 0.90263 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.41 71.98 0.68 0.24 16 2 C -0.11 -0.94 5.30 30.59 0.16 -0.78 16 3 C 0.14 2.18 1.01 2.98 0.00 2.18 16 4 C -0.15 -1.71 8.62 71.98 0.62 -1.09 16 5 N -0.68 -11.94 5.62 -439.83 -2.47 -14.41 16 6 C 0.70 21.19 8.55 179.44 1.53 22.73 16 7 O -0.57 -22.59 17.91 -3.83 -0.07 -22.66 16 8 N -0.38 -12.06 2.93 -441.13 -1.29 -13.35 16 9 N -0.50 -17.57 5.95 -175.57 -1.05 -18.62 16 10 C 0.57 25.56 7.83 86.80 0.68 26.24 16 11 O -0.56 -28.79 16.54 -3.84 -0.06 -28.85 16 12 C -0.10 -4.77 5.87 -20.13 -0.12 -4.89 16 13 C -0.20 -7.76 9.55 22.70 0.22 -7.54 16 14 C -0.08 -3.38 10.01 22.18 0.22 -3.16 16 15 C -0.21 -10.20 7.95 22.77 0.18 -10.02 16 16 C 0.06 3.45 5.29 -21.32 -0.11 3.34 16 17 C -0.56 -30.71 8.98 23.47 0.21 -30.50 16 18 H 0.07 3.80 7.96 -2.91 -0.02 3.77 16 19 C 0.01 0.38 4.93 85.25 0.42 0.80 16 20 N -0.81 -43.16 12.32 21.83 0.27 -42.89 16 21 Si 1.12 43.32 30.00 68.60 2.06 45.38 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.18 -9.57 9.34 23.01 0.21 -9.36 16 26 C 0.52 13.53 7.18 87.94 0.63 14.16 16 27 O -0.47 -14.34 18.01 -2.86 -0.05 -14.39 16 28 H 0.08 0.05 6.42 -2.39 -0.02 0.03 16 29 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.06 0.14 7.40 -2.39 -0.02 0.13 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.49 6.37 -2.38 -0.02 0.47 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.46 4.90 8.40 -92.71 -0.78 4.12 16 37 H 0.44 12.47 6.85 -213.33 -1.46 11.01 16 38 H 0.14 4.14 6.38 -2.91 -0.02 4.12 16 39 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.10 5.20 6.49 -2.91 -0.02 5.18 16 41 H 0.29 15.74 6.71 -92.71 -0.62 15.11 16 42 H 0.09 4.96 7.64 -2.91 -0.02 4.94 16 Total: -1.00 -79.51 359.79 1.88 -77.63 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.99 Total: 29.81 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.54 Total: 2.34 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -4.54 Total: -89.27 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -0.18 Total: -65.90 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.06 Total: 45.38 kcal Total: -79.51 1.88 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193171964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.276 kcal (2) G-P(sol) polarization free energy of solvation -79.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds